HEADER VIRAL PROTEIN 29-AUG-17 5OVN TITLE CRYSTAL STRUCTURE OF FIV REVERSE TRANSCRIPTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POL PROTEIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: REVERSE TRANSCRIPTASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_TAXID: 11673; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ARCTICEXPRESS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 10 ORGANISM_TAXID: 11673; SOURCE 11 GENE: POL; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VARIANT: ARCTICEXPRESS KEYWDS FIV, REVERSE TRANSCRIPTASE, NON-NUCLEOSIDE, FELINE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GALILEE,A.ALIAN REVDAT 4 17-JAN-24 5OVN 1 REMARK REVDAT 3 21-AUG-19 5OVN 1 TITLE REVDAT 2 16-MAY-18 5OVN 1 JRNL REVDAT 1 17-JAN-18 5OVN 0 JRNL AUTH M.GALILEE,A.ALIAN JRNL TITL THE STRUCTURE OF FIV REVERSE TRANSCRIPTASE AND ITS JRNL TITL 2 IMPLICATIONS FOR NON-NUCLEOSIDE INHIBITOR RESISTANCE. JRNL REF PLOS PATHOG. V. 14 06849 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 29364950 JRNL DOI 10.1371/JOURNAL.PPAT.1006849 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 37329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 95.4856 - 6.9166 1.00 3005 151 0.1980 0.2108 REMARK 3 2 6.9166 - 5.4900 1.00 2898 127 0.2332 0.2870 REMARK 3 3 5.4900 - 4.7961 1.00 2827 165 0.1901 0.2397 REMARK 3 4 4.7961 - 4.3576 1.00 2805 167 0.1820 0.2499 REMARK 3 5 4.3576 - 4.0453 1.00 2841 139 0.1945 0.2486 REMARK 3 6 4.0453 - 3.8067 0.83 2322 131 0.2178 0.2927 REMARK 3 7 3.8067 - 3.6161 1.00 2797 138 0.2386 0.3109 REMARK 3 8 3.6161 - 3.4587 0.96 2655 139 0.2535 0.3340 REMARK 3 9 3.4587 - 3.3255 0.99 2224 113 0.2586 0.3588 REMARK 3 10 3.3255 - 3.2108 1.00 2777 145 0.2611 0.2992 REMARK 3 11 3.2108 - 3.1104 1.00 2796 121 0.2759 0.3234 REMARK 3 12 3.1104 - 3.0215 1.00 2746 166 0.3134 0.3613 REMARK 3 13 3.0215 - 2.9419 1.00 2808 126 0.3112 0.3650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7612 REMARK 3 ANGLE : 0.967 10358 REMARK 3 CHIRALITY : 0.052 1132 REMARK 3 PLANARITY : 0.008 1338 REMARK 3 DIHEDRAL : 4.434 4647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -52.7847 30.7488 18.0926 REMARK 3 T TENSOR REMARK 3 T11: 0.4410 T22: 0.2972 REMARK 3 T33: 0.2856 T12: -0.3625 REMARK 3 T13: 0.0678 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.0637 L22: 0.0938 REMARK 3 L33: 0.0976 L12: -0.0337 REMARK 3 L13: 0.0279 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0460 S13: -0.0019 REMARK 3 S21: 0.0958 S22: -0.1011 S23: 0.0109 REMARK 3 S31: 0.2176 S32: -0.2268 S33: -0.0391 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.942 REMARK 200 RESOLUTION RANGE LOW (A) : 110.109 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3DOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.8 NAFORMATE, 0.2M AMFORMATE, PH 6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.78067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.56133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 127.56133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.78067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 88 REMARK 465 VAL A 89 REMARK 465 GLY B 86 REMARK 465 ALA B 87 REMARK 465 GLU B 88 REMARK 465 VAL B 89 REMARK 465 GLN B 90 REMARK 465 TRP B 211 REMARK 465 GLY B 212 REMARK 465 PHE B 213 REMARK 465 GLU B 214 REMARK 465 THR B 215 REMARK 465 PRO B 224 REMARK 465 PRO B 225 REMARK 465 TYR B 226 REMARK 465 THR B 227 REMARK 465 TRP B 228 REMARK 465 MET B 229 REMARK 465 GLY B 230 REMARK 465 TYR B 231 REMARK 465 GLU B 232 REMARK 465 LEU B 233 REMARK 465 HIS B 234 REMARK 465 PRO B 235 REMARK 465 LEU B 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 MET A 72 CG SD CE REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 LEU A 154 CG CD1 CD2 REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 TYR A 407 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 MET A 468 CG SD CE REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 470 GLU A 491 CG CD OE1 OE2 REMARK 470 LYS A 549 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 LYS B 359 CG CD CE NZ REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 ILE B 403 CG1 CG2 CD1 REMARK 470 ASN B 404 CG OD1 ND2 REMARK 470 LYS B 409 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 23 O TRP B 24 1.64 REMARK 500 O GLU B 223 N THR B 237 1.80 REMARK 500 O GLU A 522 OE2 GLU A 525 1.80 REMARK 500 C GLU A 522 OE2 GLU A 525 1.94 REMARK 500 OE1 GLN A 100 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 221 C GLU B 222 N 0.142 REMARK 500 GLU B 223 C THR B 237 N -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 345 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 GLU B 223 CA - C - N ANGL. DEV. = 22.4 DEGREES REMARK 500 GLU B 223 O - C - N ANGL. DEV. = -26.1 DEGREES REMARK 500 LEU B 408 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU B 408 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 67 62.44 62.21 REMARK 500 PHE A 76 15.51 57.04 REMARK 500 ASN A 80 3.74 -64.76 REMARK 500 LEU A 91 30.37 -97.01 REMARK 500 ALA A 113 -70.64 -63.78 REMARK 500 TYR A 126 7.69 -67.03 REMARK 500 ARG A 133 -63.41 -94.51 REMARK 500 PRO A 149 3.68 -68.83 REMARK 500 GLN A 150 16.76 80.63 REMARK 500 GLU A 222 6.45 53.43 REMARK 500 GLN A 242 69.41 60.72 REMARK 500 LYS A 243 5.01 -65.40 REMARK 500 ASN A 285 64.43 61.91 REMARK 500 GLN A 286 3.59 -66.08 REMARK 500 GLU A 346 73.96 56.35 REMARK 500 ALA A 361 34.15 -97.20 REMARK 500 ALA A 397 1.46 -68.24 REMARK 500 LEU A 402 -8.12 75.07 REMARK 500 SER A 405 68.91 -109.80 REMARK 500 ALA A 434 78.32 60.49 REMARK 500 LEU A 483 -10.53 76.92 REMARK 500 ILE B 5 148.84 -170.04 REMARK 500 SER B 67 1.46 84.74 REMARK 500 THR B 83 -74.27 -99.38 REMARK 500 GLU B 84 70.15 34.11 REMARK 500 ILE B 110 -74.00 -97.29 REMARK 500 GLU B 217 -63.91 -92.92 REMARK 500 THR B 237 0.72 -62.42 REMARK 500 GLN B 242 67.22 65.50 REMARK 500 LYS B 343 -143.66 -80.92 REMARK 500 ASP B 344 -55.16 -13.44 REMARK 500 GLU B 399 -12.10 72.67 REMARK 500 PRO B 406 -169.60 -74.26 REMARK 500 TYR B 407 -2.42 72.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 182 MET A 183 -144.90 REMARK 500 GLU A 223 PRO A 224 -139.11 REMARK 500 ASP A 344 PRO A 345 110.92 REMARK 500 TYR B 182 MET B 183 -148.39 REMARK 500 LYS B 343 ASP B 344 -127.28 REMARK 500 GLN B 357 LYS B 358 -149.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 223 17.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 615 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 616 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 511 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 512 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 513 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 514 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 515 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 516 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 517 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B 518 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B 519 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH B 520 DISTANCE = 8.80 ANGSTROMS REMARK 525 HOH B 521 DISTANCE = 10.48 ANGSTROMS DBREF 5OVN A 20 551 UNP Q66972 Q66972_9RETR 176 707 DBREF 5OVN B 2 429 UNP Q66972 Q66972_9RETR 158 585 SEQADV 5OVN ALA A 124 UNP Q66972 SER 280 CONFLICT SEQADV 5OVN GLN A 466 UNP Q66972 LYS 622 CONFLICT SEQADV 5OVN ALA B 124 UNP Q66972 SER 280 CONFLICT SEQRES 1 A 532 GLN ILE LYS GLN TRP PRO LEU THR ASN GLU LYS ILE GLU SEQRES 2 A 532 ALA LEU THR GLU ILE VAL GLU ARG LEU GLU ARG GLU GLY SEQRES 3 A 532 LYS VAL LYS ARG ALA ASP PRO ASN ASN PRO TRP ASN THR SEQRES 4 A 532 PRO VAL PHE ALA ILE LYS LYS LYS SER GLY LYS TRP ARG SEQRES 5 A 532 MET LEU ILE ASP PHE ARG GLU LEU ASN LYS LEU THR GLU SEQRES 6 A 532 LYS GLY ALA GLU VAL GLN LEU GLY LEU PRO HIS PRO ALA SEQRES 7 A 532 GLY LEU GLN ILE LYS LYS GLN VAL THR VAL LEU ASP ILE SEQRES 8 A 532 GLY ASP ALA TYR PHE THR ILE PRO LEU ASP PRO ASP TYR SEQRES 9 A 532 ALA PRO TYR THR ALA PHE THR LEU PRO ARG LYS ASN ASN SEQRES 10 A 532 ALA GLY PRO GLY ARG ARG PHE VAL TRP CYS SER LEU PRO SEQRES 11 A 532 GLN GLY TRP ILE LEU SER PRO LEU ILE TYR GLN SER THR SEQRES 12 A 532 LEU ASP ASN ILE ILE GLN PRO PHE ILE ARG GLN ASN PRO SEQRES 13 A 532 GLN LEU ASP ILE TYR GLN TYR MET ASP ASP ILE TYR ILE SEQRES 14 A 532 GLY SER ASN LEU SER LYS LYS GLU HIS LYS GLU LYS VAL SEQRES 15 A 532 GLU GLU LEU ARG LYS LEU LEU LEU TRP TRP GLY PHE GLU SEQRES 16 A 532 THR PRO GLU ASP LYS LEU GLN GLU GLU PRO PRO TYR THR SEQRES 17 A 532 TRP MET GLY TYR GLU LEU HIS PRO LEU THR TRP THR ILE SEQRES 18 A 532 GLN GLN LYS GLN LEU ASP ILE PRO GLU GLN PRO THR LEU SEQRES 19 A 532 ASN GLU LEU GLN LYS LEU ALA GLY LYS ILE ASN TRP ALA SEQRES 20 A 532 SER GLN ALA ILE PRO ASP LEU SER ILE LYS ALA LEU THR SEQRES 21 A 532 ASN MET MET ARG GLY ASN GLN ASN LEU ASN SER THR ARG SEQRES 22 A 532 GLN TRP THR LYS GLU ALA ARG LEU GLU VAL GLN LYS ALA SEQRES 23 A 532 LYS LYS ALA ILE GLU GLU GLN VAL GLN LEU GLY TYR TYR SEQRES 24 A 532 ASP PRO SER LYS GLU LEU TYR ALA LYS LEU SER LEU VAL SEQRES 25 A 532 GLY PRO HIS GLN ILE SER TYR GLN VAL TYR GLN LYS ASP SEQRES 26 A 532 PRO GLU LYS ILE LEU TRP TYR GLY LYS MET SER ARG GLN SEQRES 27 A 532 LYS LYS LYS ALA GLU ASN THR CYS ASP ILE ALA LEU ARG SEQRES 28 A 532 ALA CYS TYR LYS ILE ARG GLU GLU SER ILE ILE ARG ILE SEQRES 29 A 532 GLY LYS GLU PRO ARG TYR GLU ILE PRO THR SER ARG GLU SEQRES 30 A 532 ALA TRP GLU SER ASN LEU ILE ASN SER PRO TYR LEU LYS SEQRES 31 A 532 ALA PRO PRO PRO GLU VAL GLU TYR ILE HIS ALA ALA LEU SEQRES 32 A 532 ASN ILE LYS ARG ALA LEU SER MET ILE LYS ASP ALA PRO SEQRES 33 A 532 ILE PRO GLY ALA GLU THR TRP TYR ILE ASP GLY GLY ARG SEQRES 34 A 532 LYS LEU GLY LYS ALA ALA LYS ALA ALA TYR TRP THR ASP SEQRES 35 A 532 THR GLY LYS TRP GLN VAL MET GLU LEU GLU GLY SER ASN SEQRES 36 A 532 GLN LYS ALA GLU ILE GLN ALA LEU LEU LEU ALA LEU LYS SEQRES 37 A 532 ALA GLY SER GLU GLU MET ASN ILE ILE THR ASP SER GLN SEQRES 38 A 532 TYR VAL ILE ASN ILE ILE LEU GLN GLN PRO ASP MET MET SEQRES 39 A 532 GLU GLY ILE TRP GLN GLU VAL LEU GLU GLU LEU GLU LYS SEQRES 40 A 532 LYS THR ALA ILE PHE ILE ASP TRP VAL PRO GLY HIS LYS SEQRES 41 A 532 GLY ILE PRO GLY ASN GLU GLU VAL ASP LYS LEU CYS SEQRES 1 B 428 SER ASP LYS ILE PRO VAL VAL LYS VAL LYS MET LYS ASP SEQRES 2 B 428 PRO ASN LYS GLY PRO GLN ILE LYS GLN TRP PRO LEU THR SEQRES 3 B 428 ASN GLU LYS ILE GLU ALA LEU THR GLU ILE VAL GLU ARG SEQRES 4 B 428 LEU GLU ARG GLU GLY LYS VAL LYS ARG ALA ASP PRO ASN SEQRES 5 B 428 ASN PRO TRP ASN THR PRO VAL PHE ALA ILE LYS LYS LYS SEQRES 6 B 428 SER GLY LYS TRP ARG MET LEU ILE ASP PHE ARG GLU LEU SEQRES 7 B 428 ASN LYS LEU THR GLU LYS GLY ALA GLU VAL GLN LEU GLY SEQRES 8 B 428 LEU PRO HIS PRO ALA GLY LEU GLN ILE LYS LYS GLN VAL SEQRES 9 B 428 THR VAL LEU ASP ILE GLY ASP ALA TYR PHE THR ILE PRO SEQRES 10 B 428 LEU ASP PRO ASP TYR ALA PRO TYR THR ALA PHE THR LEU SEQRES 11 B 428 PRO ARG LYS ASN ASN ALA GLY PRO GLY ARG ARG PHE VAL SEQRES 12 B 428 TRP CYS SER LEU PRO GLN GLY TRP ILE LEU SER PRO LEU SEQRES 13 B 428 ILE TYR GLN SER THR LEU ASP ASN ILE ILE GLN PRO PHE SEQRES 14 B 428 ILE ARG GLN ASN PRO GLN LEU ASP ILE TYR GLN TYR MET SEQRES 15 B 428 ASP ASP ILE TYR ILE GLY SER ASN LEU SER LYS LYS GLU SEQRES 16 B 428 HIS LYS GLU LYS VAL GLU GLU LEU ARG LYS LEU LEU LEU SEQRES 17 B 428 TRP TRP GLY PHE GLU THR PRO GLU ASP LYS LEU GLN GLU SEQRES 18 B 428 GLU PRO PRO TYR THR TRP MET GLY TYR GLU LEU HIS PRO SEQRES 19 B 428 LEU THR TRP THR ILE GLN GLN LYS GLN LEU ASP ILE PRO SEQRES 20 B 428 GLU GLN PRO THR LEU ASN GLU LEU GLN LYS LEU ALA GLY SEQRES 21 B 428 LYS ILE ASN TRP ALA SER GLN ALA ILE PRO ASP LEU SER SEQRES 22 B 428 ILE LYS ALA LEU THR ASN MET MET ARG GLY ASN GLN ASN SEQRES 23 B 428 LEU ASN SER THR ARG GLN TRP THR LYS GLU ALA ARG LEU SEQRES 24 B 428 GLU VAL GLN LYS ALA LYS LYS ALA ILE GLU GLU GLN VAL SEQRES 25 B 428 GLN LEU GLY TYR TYR ASP PRO SER LYS GLU LEU TYR ALA SEQRES 26 B 428 LYS LEU SER LEU VAL GLY PRO HIS GLN ILE SER TYR GLN SEQRES 27 B 428 VAL TYR GLN LYS ASP PRO GLU LYS ILE LEU TRP TYR GLY SEQRES 28 B 428 LYS MET SER ARG GLN LYS LYS LYS ALA GLU ASN THR CYS SEQRES 29 B 428 ASP ILE ALA LEU ARG ALA CYS TYR LYS ILE ARG GLU GLU SEQRES 30 B 428 SER ILE ILE ARG ILE GLY LYS GLU PRO ARG TYR GLU ILE SEQRES 31 B 428 PRO THR SER ARG GLU ALA TRP GLU SER ASN LEU ILE ASN SEQRES 32 B 428 SER PRO TYR LEU LYS ALA PRO PRO PRO GLU VAL GLU TYR SEQRES 33 B 428 ILE HIS ALA ALA LEU ASN ILE LYS ARG ALA LEU SER FORMUL 3 HOH *37(H2 O) HELIX 1 AA1 THR A 27 GLY A 45 1 19 HELIX 2 AA2 GLU A 78 LEU A 82 5 5 HELIX 3 AA3 HIS A 95 LEU A 99 5 5 HELIX 4 AA4 TYR A 123 ALA A 128 5 6 HELIX 5 AA5 LEU A 154 TYR A 159 1 6 HELIX 6 AA6 TYR A 159 ASN A 174 1 16 HELIX 7 AA7 SER A 193 TRP A 210 1 18 HELIX 8 AA8 PRO A 216 LEU A 220 5 5 HELIX 9 AA9 THR A 252 ILE A 270 1 19 HELIX 10 AB1 ILE A 275 MET A 281 1 7 HELIX 11 AB2 LYS A 296 GLU A 310 1 15 HELIX 12 AB3 ASN A 363 ILE A 383 1 21 HELIX 13 AB4 ARG A 395 SER A 400 1 6 HELIX 14 AB5 SER A 473 LEU A 482 1 10 HELIX 15 AB6 LEU A 483 ALA A 488 1 6 HELIX 16 AB7 SER A 499 GLN A 509 1 11 HELIX 17 AB8 GLU A 514 LEU A 524 1 11 HELIX 18 AB9 GLY A 543 LYS A 549 1 7 HELIX 19 AC1 THR B 27 GLU B 44 1 18 HELIX 20 AC2 PHE B 76 GLU B 84 1 9 HELIX 21 AC3 PRO B 96 LYS B 102 5 7 HELIX 22 AC4 ASP B 112 ILE B 117 5 6 HELIX 23 AC5 TYR B 123 ALA B 128 5 6 HELIX 24 AC6 ARG B 133 ALA B 137 5 5 HELIX 25 AC7 LEU B 154 LEU B 163 1 10 HELIX 26 AC8 LEU B 163 GLN B 173 1 11 HELIX 27 AC9 SER B 193 LEU B 208 1 16 HELIX 28 AD1 THR B 252 SER B 267 1 16 HELIX 29 AD2 ILE B 275 MET B 282 1 8 HELIX 30 AD3 LYS B 296 GLU B 311 1 16 HELIX 31 AD4 GLN B 312 VAL B 313 5 2 HELIX 32 AD5 GLN B 314 TYR B 318 5 5 HELIX 33 AD6 ASN B 363 ILE B 383 1 21 HELIX 34 AD7 ALA B 421 LEU B 428 1 8 SHEET 1 AA1 3 VAL A 47 ARG A 49 0 SHEET 2 AA1 3 ARG A 141 TRP A 145 -1 O VAL A 144 N LYS A 48 SHEET 3 AA1 3 PHE A 129 LEU A 131 -1 N LEU A 131 O ARG A 141 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 70 ILE A 74 -1 O LEU A 73 N PHE A 61 SHEET 1 AA3 3 GLN A 104 ASP A 109 0 SHEET 2 AA3 3 ASP A 185 SER A 190 -1 O ILE A 188 N THR A 106 SHEET 3 AA3 3 LEU A 177 TYR A 182 -1 N TYR A 182 O ASP A 185 SHEET 1 AA4 3 TYR A 226 TRP A 228 0 SHEET 2 AA4 3 TYR A 231 LEU A 233 -1 O TYR A 231 N TRP A 228 SHEET 3 AA4 3 TRP A 238 ILE A 240 -1 O THR A 239 N GLU A 232 SHEET 1 AA5 5 LYS A 347 SER A 355 0 SHEET 2 AA5 5 GLN A 335 GLN A 342 -1 N VAL A 340 O TRP A 350 SHEET 3 AA5 5 TYR A 325 LEU A 330 -1 N SER A 329 O SER A 337 SHEET 4 AA5 5 ARG A 388 PRO A 392 1 O GLU A 390 N LEU A 328 SHEET 5 AA5 5 GLU A 416 ILE A 418 1 O GLU A 416 N TYR A 389 SHEET 1 AA6 5 TRP A 465 VAL A 467 0 SHEET 2 AA6 5 LYS A 455 THR A 460 -1 N TYR A 458 O GLN A 466 SHEET 3 AA6 5 THR A 441 GLY A 447 -1 N GLY A 447 O LYS A 455 SHEET 4 AA6 5 ASN A 494 THR A 497 1 O ASN A 494 N TRP A 442 SHEET 5 AA6 5 ILE A 532 TRP A 534 1 O ASP A 533 N THR A 497 SHEET 1 AA7 3 VAL B 47 ARG B 49 0 SHEET 2 AA7 3 ARG B 141 TRP B 145 -1 O VAL B 144 N LYS B 48 SHEET 3 AA7 3 PHE B 129 LEU B 131 -1 N LEU B 131 O ARG B 141 SHEET 1 AA8 2 VAL B 60 LYS B 64 0 SHEET 2 AA8 2 TRP B 70 ILE B 74 -1 O LEU B 73 N PHE B 61 SHEET 1 AA9 4 LEU B 177 TYR B 182 0 SHEET 2 AA9 4 ASP B 185 SER B 190 -1 O TYR B 187 N TYR B 180 SHEET 3 AA9 4 GLN B 104 ASP B 109 -1 N THR B 106 O ILE B 188 SHEET 4 AA9 4 ASP B 218 LEU B 220 -1 O ASP B 218 N VAL B 107 SHEET 1 AB1 5 LYS B 347 SER B 355 0 SHEET 2 AB1 5 GLN B 335 GLN B 342 -1 N VAL B 340 O TRP B 350 SHEET 3 AB1 5 TYR B 325 LEU B 330 -1 N SER B 329 O SER B 337 SHEET 4 AB1 5 ARG B 388 ILE B 391 1 O GLU B 390 N ALA B 326 SHEET 5 AB1 5 VAL B 415 TYR B 417 1 O GLU B 416 N TYR B 389 CRYST1 127.143 127.143 191.342 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007865 0.004541 0.000000 0.00000 SCALE2 0.000000 0.009082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005226 0.00000