HEADER VIRUS 06-SEP-17 5OXE TITLE STRUCTURE OF MAJOR CAPSID PROTEIN VP1 OF AEROPYRUM PERNIX BACILLIFORM TITLE 2 VIRUS 1 APBV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR VIRION PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX BACILLIFORM VIRUS 1; SOURCE 3 ORGANISM_COMMON: ISOLATE -/JAPAN/TANAKA/2005; SOURCE 4 ORGANISM_TAXID: 1289471 KEYWDS ARCHAEAL VIRUS, THERMOPHILE, CAPSID, HELICAL, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.T.HUISKONEN,D.PTCHELKINE,S.E.V.PHILLPPS REVDAT 5 15-MAY-24 5OXE 1 REMARK REVDAT 4 11-DEC-19 5OXE 1 SCALE REVDAT 3 06-NOV-19 5OXE 1 REMARK REVDAT 2 17-OCT-18 5OXE 1 REMARK REVDAT 1 22-NOV-17 5OXE 0 JRNL AUTH D.PTCHELKINE,A.GILLUM,T.MOCHIZUKI,S.LUCAS-STAAT,Y.LIU, JRNL AUTH 2 M.KRUPOVIC,S.E.V.PHILLIPS,D.PRANGISHVILI,J.T.HUISKONEN JRNL TITL UNIQUE ARCHITECTURE OF THERMOPHILIC ARCHAEAL VIRUS APBV1 AND JRNL TITL 2 ITS GENOME PACKAGING. JRNL REF NAT COMMUN V. 8 1436 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29127347 JRNL DOI 10.1038/S41467-017-01668-0 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, CTFFIND, COOT, SPRING, REMARK 3 SPRING, SPRING, REFMAC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 94645 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5OXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006326. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : AEROPYRUM PERNIX BACILLIFORM REMARK 245 VIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 37037 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 135-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.856718 -0.515786 0.000000 285.75260 REMARK 350 BIOMT2 2 0.515786 -0.856718 0.000000 163.61950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -54.90000 REMARK 350 BIOMT1 3 -0.674302 -0.738455 0.000000 290.88976 REMARK 350 BIOMT2 3 0.738455 -0.674302 0.000000 114.70233 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -48.80000 REMARK 350 BIOMT1 4 -0.436017 -0.899939 0.000000 281.87994 REMARK 350 BIOMT2 4 0.899939 -0.436017 0.000000 66.34839 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -42.70000 REMARK 350 BIOMT1 5 -0.161604 -0.986856 0.000000 259.46967 REMARK 350 BIOMT2 5 0.986856 -0.161604 0.000000 22.56415 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -36.60000 REMARK 350 BIOMT1 6 0.126199 -0.992005 0.000000 225.51580 REMARK 350 BIOMT2 6 0.992005 0.126199 0.000000 -13.02257 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -30.50000 REMARK 350 BIOMT1 7 0.403545 -0.914960 0.000000 182.83163 REMARK 350 BIOMT2 7 0.914960 0.403545 0.000000 -37.46316 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -24.40000 REMARK 350 BIOMT1 8 0.647455 -0.762104 0.000000 134.95386 REMARK 350 BIOMT2 8 0.762104 0.647455 0.000000 -48.73254 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -18.30000 REMARK 350 BIOMT1 9 0.837719 -0.546102 0.000000 85.84948 REMARK 350 BIOMT2 9 0.546102 0.837719 0.000000 -45.89697 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -12.20000 REMARK 350 BIOMT1 10 0.958572 -0.284852 0.000000 39.58715 REMARK 350 BIOMT2 10 0.284852 0.958572 0.000000 -29.19140 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -6.10000 REMARK 350 BIOMT1 11 0.958572 0.284852 0.000000 -29.63188 REMARK 350 BIOMT2 11 -0.284852 0.958572 0.000000 39.25852 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 6.10000 REMARK 350 BIOMT1 12 0.837719 0.546102 0.000000 -46.85329 REMARK 350 BIOMT2 12 -0.546102 0.837719 0.000000 85.33133 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 12.20000 REMARK 350 BIOMT1 13 0.647455 0.762104 0.000000 -50.23732 REMARK 350 BIOMT2 13 -0.762104 0.647455 0.000000 134.40096 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 18.30000 REMARK 350 BIOMT1 14 0.403545 0.914960 0.000000 -39.50357 REMARK 350 BIOMT2 14 -0.914960 0.403545 0.000000 182.40165 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 24.40000 REMARK 350 BIOMT1 15 0.126199 0.992005 0.000000 -15.54141 REMARK 350 BIOMT2 15 -0.992005 0.126199 0.000000 225.35622 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 30.50000 REMARK 350 BIOMT1 16 -0.161604 0.986856 0.000000 19.66373 REMARK 350 BIOMT2 16 -0.986856 -0.161604 0.000000 259.70558 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 36.60000 REMARK 350 BIOMT1 17 -0.436017 0.899939 0.000000 63.19485 REMARK 350 BIOMT2 17 -0.899939 -0.436017 0.000000 282.60364 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 42.70000 REMARK 350 BIOMT1 18 -0.674302 0.738455 0.000000 111.44511 REMARK 350 BIOMT2 18 -0.738455 -0.674302 0.000000 292.15315 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 48.80000 REMARK 350 BIOMT1 19 -0.856718 0.515786 0.000000 160.41662 REMARK 350 BIOMT2 19 -0.515786 -0.856718 0.000000 287.56285 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 54.90000 REMARK 350 BIOMT1 20 -0.968148 0.250380 0.000000 206.05177 REMARK 350 BIOMT2 20 -0.250380 -0.968148 0.000000 269.21310 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 61.00000 REMARK 350 BIOMT1 21 -0.999360 -0.035772 0.000000 244.56935 REMARK 350 BIOMT2 21 0.035772 -0.999360 0.000000 238.62428 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 67.10000 REMARK 350 BIOMT1 22 -0.947768 -0.318959 0.000000 272.77793 REMARK 350 BIOMT2 22 0.318959 -0.947768 0.000000 198.33090 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 73.20000 REMARK 350 BIOMT1 23 -0.817648 -0.575719 0.000000 288.34022 REMARK 350 BIOMT2 23 0.575719 -0.817648 0.000000 151.67155 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 79.30000 REMARK 350 BIOMT1 24 -0.619779 -0.784776 0.000000 289.96678 REMARK 350 BIOMT2 24 0.784776 -0.619779 0.000000 102.51227 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 85.40000 REMARK 350 BIOMT1 25 -0.370557 -0.928810 0.000000 277.52284 REMARK 350 BIOMT2 25 0.928810 -0.370557 0.000000 54.92626 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 91.50000 REMARK 350 BIOMT1 26 -0.090633 -0.995884 0.000000 252.03946 REMARK 350 BIOMT2 26 0.995884 -0.090633 0.000000 12.85635 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 97.60000 REMARK 350 BIOMT1 27 0.196802 -0.980443 0.000000 215.62812 REMARK 350 BIOMT2 27 0.980443 0.196802 0.000000 -20.21168 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 103.70000 REMARK 350 BIOMT1 28 -0.755282 0.655400 0.000000 131.26599 REMARK 350 BIOMT2 28 -0.655400 -0.755282 0.000000 292.01307 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -54.90000 REMARK 350 BIOMT1 29 -0.910684 0.413104 0.000000 179.37645 REMARK 350 BIOMT2 29 -0.413104 -0.910684 0.000000 281.78256 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 -48.80000 REMARK 350 BIOMT1 30 -0.990629 0.136580 0.000000 222.57959 REMARK 350 BIOMT2 30 -0.136580 -0.990629 0.000000 258.27153 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -42.70000 REMARK 350 BIOMT1 31 -0.988494 -0.151261 0.000000 257.29573 REMARK 350 BIOMT2 31 0.151261 -0.988494 0.000000 223.42802 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -36.60000 REMARK 350 BIOMT1 32 -0.904455 -0.426569 0.000000 280.64839 REMARK 350 BIOMT2 32 0.426569 -0.904455 0.000000 180.13907 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -30.50000 REMARK 350 BIOMT1 33 -0.745476 -0.666532 0.000000 290.70264 REMARK 350 BIOMT2 33 0.666532 -0.745476 0.000000 131.99146 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -24.40000 REMARK 350 BIOMT1 34 -0.524729 -0.851269 0.000000 286.62541 REMARK 350 BIOMT2 34 0.851269 -0.524729 0.000000 82.97456 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 -18.30000 REMARK 350 BIOMT1 35 -0.260505 -0.965473 0.000000 268.75454 REMARK 350 BIOMT2 35 0.965473 -0.260505 0.000000 37.14976 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -12.20000 REMARK 350 BIOMT1 36 0.025305 -0.999680 0.000000 238.57075 REMARK 350 BIOMT2 36 0.999680 0.025305 0.000000 -1.68603 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 -6.10000 REMARK 350 BIOMT1 37 0.309017 -0.951057 0.000000 198.57497 REMARK 350 BIOMT2 37 0.951057 0.309017 0.000000 -30.31501 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 38 0.567125 -0.823632 0.000000 152.08114 REMARK 350 BIOMT2 38 0.823632 0.567125 0.000000 -46.36505 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 6.10000 REMARK 350 BIOMT1 39 0.778243 -0.627963 0.000000 102.94160 REMARK 350 BIOMT2 39 0.627963 0.778243 0.000000 -48.50630 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 12.20000 REMARK 350 BIOMT1 40 0.924878 -0.380263 0.000000 55.22789 REMARK 350 BIOMT2 40 0.380263 0.924878 0.000000 -36.56135 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 18.30000 REMARK 350 BIOMT1 41 0.994881 -0.101056 0.000000 12.89342 REMARK 350 BIOMT2 41 0.101056 0.994881 0.000000 -11.51992 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 24.40000 REMARK 350 BIOMT1 42 0.982450 0.186524 0.000000 -20.55409 REMARK 350 BIOMT2 42 -0.186524 0.982450 0.000000 24.54314 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 30.50000 REMARK 350 BIOMT1 43 0.888617 0.458650 0.000000 -42.34328 REMARK 350 BIOMT2 43 -0.458650 0.888617 0.000000 68.63975 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 36.60000 REMARK 350 BIOMT1 44 0.721156 0.692773 0.000000 -50.66878 REMARK 350 BIOMT2 44 -0.692773 0.721156 0.000000 117.11620 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 42.70000 REMARK 350 BIOMT1 45 0.493942 0.869495 0.000000 -44.84075 REMARK 350 BIOMT2 45 -0.869495 0.493942 0.000000 165.95588 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 48.80000 REMARK 350 BIOMT1 46 0.225801 0.974173 0.000000 -25.34209 REMARK 350 BIOMT2 46 -0.974173 0.225801 0.000000 211.11208 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 54.90000 REMARK 350 BIOMT1 47 -0.061049 0.998135 0.000000 6.21160 REMARK 350 BIOMT2 47 -0.998135 -0.061049 0.000000 248.84329 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 61.00000 REMARK 350 BIOMT1 48 -0.342840 0.939394 0.000000 47.20589 REMARK 350 BIOMT2 48 -0.939394 -0.342840 0.000000 276.02323 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 67.10000 REMARK 350 BIOMT1 49 -0.596225 0.802817 0.000000 94.24410 REMARK 350 BIOMT2 49 -0.802817 -0.596225 0.000000 290.39984 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 73.20000 REMARK 350 BIOMT1 50 -0.800208 0.599722 0.000000 143.42879 REMARK 350 BIOMT2 50 -0.599722 -0.800208 0.000000 290.78193 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 79.30000 REMARK 350 BIOMT1 51 -0.937889 0.346936 0.000000 190.68467 REMARK 350 BIOMT2 51 -0.346936 -0.937889 0.000000 277.13782 REMARK 350 BIOMT3 51 0.000000 0.000000 1.000000 85.40000 REMARK 350 BIOMT1 52 -0.997859 0.065403 0.000000 232.09627 REMARK 350 BIOMT2 52 -0.065403 -0.997859 0.000000 250.59805 REMARK 350 BIOMT3 52 0.000000 0.000000 1.000000 91.50000 REMARK 350 BIOMT1 53 -0.975149 -0.221548 0.000000 264.23234 REMARK 350 BIOMT2 53 0.221548 -0.975149 0.000000 213.36159 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 97.60000 REMARK 350 BIOMT1 54 -0.871642 -0.490143 0.000000 284.43018 REMARK 350 BIOMT2 54 0.490143 -0.871642 0.000000 168.51377 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 103.70000 REMARK 350 BIOMT1 55 0.389928 0.920845 0.000000 -38.58254 REMARK 350 BIOMT2 55 -0.920845 0.389928 0.000000 184.76337 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 -54.90000 REMARK 350 BIOMT1 56 0.111469 0.993768 0.000000 -13.98579 REMARK 350 BIOMT2 56 -0.993768 0.111469 0.000000 227.35774 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 -48.80000 REMARK 350 BIOMT1 57 -0.176226 0.984350 0.000000 21.72503 REMARK 350 BIOMT2 57 -0.984350 -0.176226 0.000000 261.18106 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 -42.70000 REMARK 350 BIOMT1 58 -0.449319 0.893371 0.000000 65.59105 REMARK 350 BIOMT2 58 -0.893371 -0.449319 0.000000 283.43083 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 -36.60000 REMARK 350 BIOMT1 59 -0.685183 0.728371 0.000000 113.97766 REMARK 350 BIOMT2 59 -0.728371 -0.685183 0.000000 292.26351 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 -30.50000 REMARK 350 BIOMT1 60 -0.864275 0.503020 0.000000 162.87569 REMARK 350 BIOMT2 60 -0.503020 -0.864275 0.000000 286.94724 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 -24.40000 REMARK 350 BIOMT1 61 -0.971755 0.235990 0.000000 208.23360 REMARK 350 BIOMT2 61 -0.235990 -0.971755 0.000000 267.92251 REMARK 350 BIOMT3 61 0.000000 0.000000 1.000000 -18.30000 REMARK 350 BIOMT1 62 -0.998719 -0.050593 0.000000 246.29317 REMARK 350 BIOMT2 62 0.050593 -0.998719 0.000000 236.76566 REMARK 350 BIOMT3 62 0.000000 0.000000 1.000000 -12.20000 REMARK 350 BIOMT1 63 -0.942932 -0.332984 0.000000 273.90090 REMARK 350 BIOMT2 63 0.332984 -0.942932 0.000000 196.05825 REMARK 350 BIOMT3 63 0.000000 0.000000 1.000000 -6.10000 REMARK 350 BIOMT1 64 -0.809017 -0.587785 0.000000 288.76930 REMARK 350 BIOMT2 64 0.587785 -0.809017 0.000000 149.17317 REMARK 350 BIOMT3 64 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 65 -0.608069 -0.793884 0.000000 289.66641 REMARK 350 BIOMT2 65 0.793884 -0.608069 0.000000 99.99517 REMARK 350 BIOMT3 65 0.000000 0.000000 1.000000 6.10000 REMARK 350 BIOMT1 66 -0.356738 -0.934204 0.000000 276.51791 REMARK 350 BIOMT2 66 0.934204 -0.356738 0.000000 52.59900 REMARK 350 BIOMT3 66 0.000000 0.000000 1.000000 12.20000 REMARK 350 BIOMT1 67 -0.075849 -0.997119 0.000000 250.41324 REMARK 350 BIOMT2 67 0.997119 -0.075849 0.000000 10.91176 REMARK 350 BIOMT3 67 0.000000 0.000000 1.000000 18.30000 REMARK 350 BIOMT1 68 0.211325 -0.977416 0.000000 213.51536 REMARK 350 BIOMT2 68 0.977416 0.211325 0.000000 -21.61248 REMARK 350 BIOMT3 68 0.000000 0.000000 1.000000 24.40000 REMARK 350 BIOMT1 69 0.480989 -0.876727 0.000000 168.88150 REMARK 350 BIOMT2 69 0.876727 0.480989 0.000000 -42.27886 REMARK 350 BIOMT3 69 0.000000 0.000000 1.000000 30.50000 REMARK 350 BIOMT1 70 0.710799 -0.703395 0.000000 120.20990 REMARK 350 BIOMT2 70 0.703395 0.710799 0.000000 -49.37501 REMARK 350 BIOMT3 70 0.000000 0.000000 1.000000 36.60000 REMARK 350 BIOMT1 71 0.881715 -0.471782 0.000000 71.53334 REMARK 350 BIOMT2 71 0.471782 0.881715 0.000000 -42.31298 REMARK 350 BIOMT3 71 0.000000 0.000000 1.000000 42.70000 REMARK 350 BIOMT1 72 0.979575 -0.201078 0.000000 26.88500 REMARK 350 BIOMT2 72 0.201078 0.979575 0.000000 -21.67791 REMARK 350 BIOMT3 72 0.000000 0.000000 1.000000 48.80000 REMARK 350 BIOMT1 73 0.996270 0.086286 0.000000 -10.03568 REMARK 350 BIOMT2 73 -0.086286 0.996270 0.000000 10.82046 REMARK 350 BIOMT3 73 0.000000 0.000000 1.000000 54.90000 REMARK 350 BIOMT1 74 0.930418 0.366501 0.000000 -36.16957 REMARK 350 BIOMT2 74 -0.366501 0.930418 0.000000 52.48939 REMARK 350 BIOMT3 74 0.000000 0.000000 1.000000 61.00000 REMARK 350 BIOMT1 75 0.787473 0.616349 0.000000 -49.35130 REMARK 350 BIOMT2 75 -0.616349 0.787473 0.000000 99.87633 REMARK 350 BIOMT3 75 0.000000 0.000000 1.000000 67.10000 REMARK 350 BIOMT1 76 0.579281 0.815128 0.000000 -48.48866 REMARK 350 BIOMT2 76 -0.815128 0.579281 0.000000 149.05494 REMARK 350 BIOMT3 76 0.000000 0.000000 1.000000 73.20000 REMARK 350 BIOMT1 77 0.323092 0.946368 0.000000 -33.65314 REMARK 350 BIOMT2 77 -0.946368 0.323092 0.000000 195.95044 REMARK 350 BIOMT3 77 0.000000 0.000000 1.000000 79.30000 REMARK 350 BIOMT1 78 0.040132 0.999194 0.000000 -6.07395 REMARK 350 BIOMT2 78 -0.999194 0.040132 0.000000 236.67719 REMARK 350 BIOMT3 78 0.000000 0.000000 1.000000 85.40000 REMARK 350 BIOMT1 79 -0.246153 0.969231 0.000000 31.96376 REMARK 350 BIOMT2 79 -0.969231 -0.246153 0.000000 267.86072 REMARK 350 BIOMT3 79 0.000000 0.000000 1.000000 91.50000 REMARK 350 BIOMT1 80 -0.512043 0.858960 0.000000 77.30832 REMARK 350 BIOMT2 80 -0.858960 -0.512043 0.000000 286.91724 REMARK 350 BIOMT3 80 0.000000 0.000000 1.000000 97.60000 REMARK 350 BIOMT1 81 -0.735506 0.677518 0.000000 126.20261 REMARK 350 BIOMT2 81 -0.677518 -0.735506 0.000000 292.26779 REMARK 350 BIOMT3 81 0.000000 0.000000 1.000000 103.70000 REMARK 350 BIOMT1 82 0.996270 -0.086286 0.000000 10.93191 REMARK 350 BIOMT2 82 0.086286 0.996270 0.000000 -9.91416 REMARK 350 BIOMT3 82 0.000000 0.000000 1.000000 -54.90000 REMARK 350 BIOMT1 83 0.979575 0.201078 0.000000 -21.97693 REMARK 350 BIOMT2 83 -0.201078 0.979575 0.000000 26.64112 REMARK 350 BIOMT3 83 0.000000 0.000000 1.000000 -48.80000 REMARK 350 BIOMT1 84 0.881715 0.471782 0.000000 -43.10957 REMARK 350 BIOMT2 84 -0.471782 0.881715 0.000000 71.05611 REMARK 350 BIOMT3 84 0.000000 0.000000 1.000000 -42.70000 REMARK 350 BIOMT1 85 0.710799 0.703395 0.000000 -50.71501 REMARK 350 BIOMT2 85 -0.703395 0.710799 0.000000 119.65074 REMARK 350 BIOMT3 85 0.000000 0.000000 1.000000 -36.60000 REMARK 350 BIOMT1 86 0.480989 0.876727 0.000000 -44.16310 REMARK 350 BIOMT2 86 -0.876727 0.480989 0.000000 168.39858 REMARK 350 BIOMT3 86 0.000000 0.000000 1.000000 -30.50000 REMARK 350 BIOMT1 87 0.211325 0.977416 0.000000 -23.99671 REMARK 350 BIOMT2 87 -0.977416 0.211325 0.000000 213.26056 REMARK 350 BIOMT3 87 0.000000 0.000000 1.000000 -24.40000 REMARK 350 BIOMT1 88 -0.075849 0.997119 0.000000 8.11325 REMARK 350 BIOMT2 88 -0.997119 -0.075849 0.000000 250.51953 REMARK 350 BIOMT3 88 0.000000 0.000000 1.000000 -18.30000 REMARK 350 BIOMT1 89 -0.356738 0.934204 0.000000 49.50623 REMARK 350 BIOMT2 89 -0.934204 -0.356738 0.000000 277.08833 REMARK 350 BIOMT3 89 0.000000 0.000000 1.000000 -12.20000 REMARK 350 BIOMT1 90 -0.608069 0.793884 0.000000 96.75253 REMARK 350 BIOMT2 90 -0.793884 -0.608069 0.000000 290.76556 REMARK 350 BIOMT3 90 0.000000 0.000000 1.000000 -6.10000 REMARK 350 BIOMT1 91 -0.809017 0.587785 0.000000 145.93748 REMARK 350 BIOMT2 91 -0.587785 -0.809017 0.000000 290.41796 REMARK 350 BIOMT3 91 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 92 -0.942932 0.332984 0.000000 192.98576 REMARK 350 BIOMT2 92 -0.332984 -0.942932 0.000000 276.07433 REMARK 350 BIOMT3 92 0.000000 0.000000 1.000000 6.10000 REMARK 350 BIOMT1 93 -0.998719 0.050593 0.000000 233.99909 REMARK 350 BIOMT2 93 -0.050593 -0.998719 0.000000 248.92314 REMARK 350 BIOMT3 93 0.000000 0.000000 1.000000 12.20000 REMARK 350 BIOMT1 94 -0.971755 -0.235990 0.000000 265.57923 REMARK 350 BIOMT2 94 0.235990 -0.971755 0.000000 211.21406 REMARK 350 BIOMT3 94 0.000000 0.000000 1.000000 18.30000 REMARK 350 BIOMT1 95 -0.864275 -0.503020 0.000000 285.10954 REMARK 350 BIOMT2 95 0.503020 -0.864275 0.000000 166.07154 REMARK 350 BIOMT3 95 0.000000 0.000000 1.000000 24.40000 REMARK 350 BIOMT1 96 -0.685183 -0.728371 0.000000 290.97181 REMARK 350 BIOMT2 96 0.728371 -0.685183 0.000000 117.23596 REMARK 350 BIOMT3 96 0.000000 0.000000 1.000000 30.50000 REMARK 350 BIOMT1 97 -0.449319 -0.893371 0.000000 282.68030 REMARK 350 BIOMT2 97 0.893371 -0.449319 0.000000 68.75369 REMARK 350 BIOMT3 97 0.000000 0.000000 1.000000 36.60000 REMARK 350 BIOMT1 98 -0.176226 -0.984350 0.000000 260.92203 REMARK 350 BIOMT2 98 0.984350 -0.176226 0.000000 24.64181 REMARK 350 BIOMT3 98 0.000000 0.000000 1.000000 42.70000 REMARK 350 BIOMT1 99 0.111469 -0.993768 0.000000 227.49981 REMARK 350 BIOMT2 99 0.993768 0.111469 0.000000 -11.44469 REMARK 350 BIOMT3 99 0.000000 0.000000 1.000000 48.80000 REMARK 350 BIOMT1 100 0.389928 -0.920845 0.000000 185.18291 REMARK 350 BIOMT2 100 0.920845 0.389928 0.000000 -36.51580 REMARK 350 BIOMT3 100 0.000000 0.000000 1.000000 54.90000 REMARK 350 BIOMT1 101 0.636078 -0.771625 0.000000 137.47759 REMARK 350 BIOMT2 101 0.771625 0.636078 0.000000 -48.49420 REMARK 350 BIOMT3 101 0.000000 0.000000 1.000000 61.00000 REMARK 350 BIOMT1 102 0.829525 -0.558469 0.000000 88.33655 REMARK 350 BIOMT2 102 0.558469 0.829525 0.000000 -46.38739 REMARK 350 BIOMT3 102 0.000000 0.000000 1.000000 67.10000 REMARK 350 BIOMT1 103 0.954240 -0.299041 0.000000 41.83148 REMARK 350 BIOMT2 103 0.299041 0.954240 0.000000 -30.36995 REMARK 350 BIOMT3 103 0.000000 0.000000 1.000000 73.20000 REMARK 350 BIOMT1 104 0.999890 -0.014835 0.000000 1.81564 REMARK 350 BIOMT2 104 0.014835 0.999890 0.000000 -1.76903 REMARK 350 BIOMT3 104 0.000000 0.000000 1.000000 79.30000 REMARK 350 BIOMT1 105 0.962692 0.270600 0.000000 -28.39537 REMARK 350 BIOMT2 105 -0.270600 0.962692 0.000000 37.04560 REMARK 350 BIOMT3 105 0.000000 0.000000 1.000000 85.40000 REMARK 350 BIOMT1 106 0.845728 0.533615 0.000000 -46.29836 REMARK 350 BIOMT2 106 -0.533615 0.845728 0.000000 82.85785 REMARK 350 BIOMT3 106 0.000000 0.000000 1.000000 91.50000 REMARK 350 BIOMT1 107 0.658689 0.752415 0.000000 -50.40995 REMARK 350 BIOMT2 107 -0.752415 0.658689 0.000000 131.87188 REMARK 350 BIOMT3 107 0.000000 0.000000 1.000000 97.60000 REMARK 350 BIOMT1 108 0.417074 0.908872 0.000000 -40.38946 REMARK 350 BIOMT2 108 -0.908872 0.417074 0.000000 180.02653 REMARK 350 BIOMT3 108 0.000000 0.000000 1.000000 103.70000 REMARK 350 BIOMT1 109 0.225801 -0.974173 0.000000 211.38204 REMARK 350 BIOMT2 109 0.974173 0.225801 0.000000 -22.98179 REMARK 350 BIOMT3 109 0.000000 0.000000 1.000000 -54.90000 REMARK 350 BIOMT1 110 0.493942 -0.869495 0.000000 166.44652 REMARK 350 BIOMT2 110 0.869495 0.493942 0.000000 -42.98375 REMARK 350 BIOMT3 110 0.000000 0.000000 1.000000 -48.80000 REMARK 350 BIOMT1 111 0.721156 -0.692773 0.000000 117.67500 REMARK 350 BIOMT2 111 0.692773 0.721156 0.000000 -49.35709 REMARK 350 BIOMT3 111 0.000000 0.000000 1.000000 -42.70000 REMARK 350 BIOMT1 112 0.888617 -0.458650 0.000000 69.10856 REMARK 350 BIOMT2 112 0.458650 0.888617 0.000000 -41.57374 REMARK 350 BIOMT3 112 0.000000 0.000000 1.000000 -36.60000 REMARK 350 BIOMT1 113 0.982450 -0.186524 0.000000 24.77126 REMARK 350 BIOMT2 113 0.186524 0.982450 0.000000 -20.27859 REMARK 350 BIOMT3 113 0.000000 0.000000 1.000000 -30.50000 REMARK 350 BIOMT1 114 0.994881 0.101056 0.000000 -11.66326 REMARK 350 BIOMT2 114 -0.101056 0.994881 0.000000 12.76391 REMARK 350 BIOMT3 114 0.000000 0.000000 1.000000 -24.40000 REMARK 350 BIOMT1 115 0.924878 0.380263 0.000000 -37.17612 REMARK 350 BIOMT2 115 -0.380263 0.924878 0.000000 54.81594 REMARK 350 BIOMT3 115 0.000000 0.000000 1.000000 -18.30000 REMARK 350 BIOMT1 116 0.778243 0.627963 0.000000 -49.65343 REMARK 350 BIOMT2 116 -0.627963 0.778243 0.000000 102.39322 REMARK 350 BIOMT3 116 0.000000 0.000000 1.000000 -12.20000 REMARK 350 BIOMT1 117 0.567125 0.823632 0.000000 -48.06133 REMARK 350 BIOMT2 117 -0.823632 0.567125 0.000000 151.55362 REMARK 350 BIOMT3 117 0.000000 0.000000 1.000000 -6.10000 REMARK 350 BIOMT1 118 0.309017 0.951057 0.000000 -32.53176 REMARK 350 BIOMT2 118 -0.951057 0.309017 0.000000 198.22388 REMARK 350 BIOMT3 118 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 119 0.025305 0.999680 0.000000 -4.35144 REMARK 350 BIOMT2 119 -0.999680 0.025305 0.000000 238.53702 REMARK 350 BIOMT3 119 0.000000 0.000000 1.000000 6.10000 REMARK 350 BIOMT1 120 -0.260505 0.965473 0.000000 34.14469 REMARK 350 BIOMT2 120 -0.965473 -0.260505 0.000000 269.15283 REMARK 350 BIOMT3 120 0.000000 0.000000 1.000000 12.20000 REMARK 350 BIOMT1 121 -0.524729 0.851269 0.000000 79.76696 REMARK 350 BIOMT2 121 -0.851269 -0.524729 0.000000 287.53458 REMARK 350 BIOMT3 121 0.000000 0.000000 1.000000 18.30000 REMARK 350 BIOMT1 122 -0.745476 0.666532 0.000000 128.73525 REMARK 350 BIOMT2 122 -0.666532 -0.745476 0.000000 292.15921 REMARK 350 BIOMT3 122 0.000000 0.000000 1.000000 24.40000 REMARK 350 BIOMT1 123 -0.904455 0.426569 0.000000 176.99218 REMARK 350 BIOMT2 123 -0.426569 -0.904455 0.000000 282.64353 REMARK 350 BIOMT3 123 0.000000 0.000000 1.000000 30.50000 REMARK 350 BIOMT1 124 -0.988494 0.151261 0.000000 220.53935 REMARK 350 BIOMT2 124 -0.151261 -0.988494 0.000000 259.77599 REMARK 350 BIOMT3 124 0.000000 0.000000 1.000000 36.60000 REMARK 350 BIOMT1 125 -0.990629 -0.136580 0.000000 255.76856 REMARK 350 BIOMT2 125 0.136580 -0.990629 0.000000 225.45133 REMARK 350 BIOMT3 125 0.000000 0.000000 1.000000 42.70000 REMARK 350 BIOMT1 126 -0.910684 -0.413104 0.000000 279.76083 REMARK 350 BIOMT2 126 0.413104 -0.910684 0.000000 182.51357 REMARK 350 BIOMT3 126 0.000000 0.000000 1.000000 48.80000 REMARK 350 BIOMT1 127 -0.755282 -0.655400 0.000000 290.52823 REMARK 350 BIOMT2 127 0.655400 -0.755282 0.000000 134.52041 REMARK 350 BIOMT3 127 0.000000 0.000000 1.000000 54.90000 REMARK 350 BIOMT1 128 -0.537300 -0.843391 0.000000 287.17861 REMARK 350 BIOMT2 128 0.843391 -0.537300 0.000000 85.44842 REMARK 350 BIOMT3 128 0.000000 0.000000 1.000000 61.00000 REMARK 350 BIOMT1 129 -0.274798 -0.961502 0.000000 269.98950 REMARK 350 BIOMT2 129 0.961502 -0.274798 0.000000 39.36356 REMARK 350 BIOMT3 129 0.000000 0.000000 1.000000 67.10000 REMARK 350 BIOMT1 130 0.010472 -0.999945 0.000000 240.38515 REMARK 350 BIOMT2 130 0.999945 0.010472 0.000000 0.08427 REMARK 350 BIOMT3 130 0.000000 0.000000 1.000000 73.20000 REMARK 350 BIOMT1 131 0.294874 -0.955536 0.000000 200.81848 REMARK 350 BIOMT2 131 0.955536 0.294874 0.000000 -29.13488 REMARK 350 BIOMT3 131 0.000000 0.000000 1.000000 79.30000 REMARK 350 BIOMT1 132 0.554844 -0.831954 0.000000 154.56787 REMARK 350 BIOMT2 132 0.831954 0.554844 0.000000 -45.87289 REMARK 350 BIOMT3 132 0.000000 0.000000 1.000000 85.40000 REMARK 350 BIOMT1 133 0.768842 -0.639439 0.000000 105.46549 REMARK 350 BIOMT2 133 0.639439 0.768842 0.000000 -48.74288 REMARK 350 BIOMT3 133 0.000000 0.000000 1.000000 91.50000 REMARK 350 BIOMT1 134 0.919135 -0.393942 0.000000 57.57983 REMARK 350 BIOMT2 134 0.393942 0.919135 0.000000 -37.50706 REMARK 350 BIOMT3 134 0.000000 0.000000 1.000000 97.60000 REMARK 350 BIOMT1 135 0.993272 -0.115804 0.000000 14.87854 REMARK 350 BIOMT2 135 0.115804 0.993272 0.000000 -13.09641 REMARK 350 BIOMT3 135 0.000000 0.000000 1.000000 103.70000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -75.40 -113.37 REMARK 500 SER A 48 -41.59 -130.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3857 RELATED DB: EMDB REMARK 900 STRUCTURE OF MAJOR CAPSID PROTEIN VP1 OF AEROPYRUM PERNIX REMARK 900 BACILLIFORM VIRUS 1 APBV1 DBREF 5OXE A 1 81 UNP D4QF72 D4QF72_APBV1 1 81 SEQRES 1 A 81 MET ALA PRO LYS ALA THR LEU VAL LYS LYS PHE LYS GLY SEQRES 2 A 81 LEU ALA VAL GLY VAL GLY ALA LEU LEU ALA ALA PRO PRO SEQRES 3 A 81 ILE MET GLY LEU ALA SER TYR ALA VAL ASN GLY ILE SER SEQRES 4 A 81 SER TYR LEU SER ILE THR ILE ASN SER THR THR TYR ASP SEQRES 5 A 81 PHE ALA PRO LEU ALA GLN ALA VAL MET VAL PHE GLY GLY SEQRES 6 A 81 ILE GLY LEU VAL ALA TYR GLY LEU HIS ARG ILE LEU GLY SEQRES 7 A 81 ARG GLY LEU HELIX 1 AA1 LYS A 10 ALA A 23 1 14 HELIX 2 AA2 ALA A 23 SER A 40 1 18 HELIX 3 AA3 PHE A 53 ILE A 76 1 24 SHEET 1 AA1 2 SER A 43 THR A 45 0 SHEET 2 AA1 2 THR A 50 ASP A 52 -1 O TYR A 51 N ILE A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000