HEADER TRANSPORT PROTEIN 07-SEP-17 5OXL TITLE PEPTST IN COMPLEX WITH DIPEPTIDE ALA-LEU COMPND MOL_ID: 1; COMPND 2 MOLECULE: DI-OR TRIPEPTIDE:H+ SYMPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS (STRAIN ATCC BAA-250 SOURCE 3 / LMG 18311); SOURCE 4 ORGANISM_TAXID: 264199; SOURCE 5 STRAIN: ATCC BAA-250 / LMG 18311; SOURCE 6 GENE: DTPT, STU0970; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS ALPHA-HELICAL MEMBRANE PROTEIN, MFS FOLD, MEMBRANE PROTEIN, PEPTIDE KEYWDS 2 TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ MOLLEDO,E.M.QUISTGAARD,C.LOEW REVDAT 4 17-JAN-24 5OXL 1 REMARK REVDAT 3 23-JAN-19 5OXL 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES SITE ATOM REVDAT 2 18-APR-18 5OXL 1 JRNL REVDAT 1 21-FEB-18 5OXL 0 JRNL AUTH M.MARTINEZ MOLLEDO,E.M.QUISTGAARD,A.FLAYHAN,J.PIEPRZYK,C.LOW JRNL TITL MULTISPECIFIC SUBSTRATE RECOGNITION IN A PROTON-DEPENDENT JRNL TITL 2 OLIGOPEPTIDE TRANSPORTER. JRNL REF STRUCTURE V. 26 467 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29429879 JRNL DOI 10.1016/J.STR.2018.01.005 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 19071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.8288 - 3.8334 0.99 2850 148 0.2087 0.2274 REMARK 3 2 3.8334 - 3.3490 0.98 2778 143 0.2139 0.2373 REMARK 3 3 3.3490 - 3.0428 0.99 2785 145 0.2458 0.2410 REMARK 3 4 3.0428 - 2.8248 0.99 2810 148 0.2596 0.3012 REMARK 3 5 2.8248 - 2.6600 0.97 2745 140 0.2828 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3845 REMARK 3 ANGLE : 0.755 5166 REMARK 3 CHIRALITY : 0.025 575 REMARK 3 PLANARITY : 0.004 607 REMARK 3 DIHEDRAL : 17.751 1354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9067 15.6953 -1.1267 REMARK 3 T TENSOR REMARK 3 T11: 0.3110 T22: 0.3358 REMARK 3 T33: 0.4196 T12: -0.0120 REMARK 3 T13: 0.0055 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.7135 L22: 0.9162 REMARK 3 L33: 1.1140 L12: -0.2247 REMARK 3 L13: -0.6995 L23: 0.1406 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.0204 S13: 0.0597 REMARK 3 S21: -0.0547 S22: 0.0772 S23: 0.0322 REMARK 3 S31: 0.0298 S32: 0.0678 S33: 0.0097 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2052 10.7107 -6.6756 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.2696 REMARK 3 T33: 0.4568 T12: -0.0117 REMARK 3 T13: 0.0210 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.9190 L22: 2.3589 REMARK 3 L33: 1.6762 L12: 0.2783 REMARK 3 L13: -0.5963 L23: 0.3506 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: 0.1260 S13: -0.0338 REMARK 3 S21: -0.2815 S22: 0.0596 S23: 0.0415 REMARK 3 S31: 0.0501 S32: -0.0732 S33: 0.0314 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2524 31.4128 -13.7672 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.3474 REMARK 3 T33: 0.4474 T12: -0.0078 REMARK 3 T13: 0.0663 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.2780 L22: 0.7264 REMARK 3 L33: 1.9183 L12: -0.3174 REMARK 3 L13: -0.9707 L23: -0.6027 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0210 S13: 0.3281 REMARK 3 S21: -0.1929 S22: -0.0358 S23: -0.0637 REMARK 3 S31: -0.2175 S32: 0.3171 S33: -0.1895 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6891 23.3419 1.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.4351 REMARK 3 T33: 0.4631 T12: 0.0598 REMARK 3 T13: -0.0063 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.8722 L22: 2.2309 REMARK 3 L33: 1.2324 L12: 0.8430 REMARK 3 L13: -1.0194 L23: 0.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.1555 S12: 0.5221 S13: 0.0996 REMARK 3 S21: -0.2884 S22: 0.1103 S23: 0.1267 REMARK 3 S31: -0.2051 S32: -0.3367 S33: -0.0242 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4932 25.1042 -7.3864 REMARK 3 T TENSOR REMARK 3 T11: 0.6414 T22: 0.4389 REMARK 3 T33: 0.5324 T12: -0.0261 REMARK 3 T13: 0.0082 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 1.0780 L22: 2.8872 REMARK 3 L33: 2.3200 L12: -0.9495 REMARK 3 L13: -1.5122 L23: 3.8519 REMARK 3 S TENSOR REMARK 3 S11: 0.5138 S12: 0.4445 S13: 0.1653 REMARK 3 S21: -0.3640 S22: 0.2817 S23: -0.5289 REMARK 3 S31: 0.2585 S32: -0.0373 S33: -0.3640 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 445 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3009 31.6168 7.4959 REMARK 3 T TENSOR REMARK 3 T11: 0.5120 T22: 0.3807 REMARK 3 T33: 0.6250 T12: 0.0956 REMARK 3 T13: 0.1002 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.5160 L22: 3.7102 REMARK 3 L33: 4.7760 L12: 0.0650 REMARK 3 L13: -1.4978 L23: 0.1964 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.4321 S13: 0.5873 REMARK 3 S21: -0.1570 S22: -0.4458 S23: 0.3982 REMARK 3 S31: -0.6748 S32: -0.4991 S33: -0.2149 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7874 17.3155 -4.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.5682 T22: 0.4342 REMARK 3 T33: 0.5239 T12: 0.0027 REMARK 3 T13: -0.0790 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.1722 L22: 7.1724 REMARK 3 L33: 3.6831 L12: 0.0775 REMARK 3 L13: 2.0012 L23: -1.2242 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: 0.4931 S13: 1.2191 REMARK 3 S21: 0.3354 S22: 0.2762 S23: 0.3945 REMARK 3 S31: -1.1753 S32: -0.1822 S33: -0.3207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19071 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 46.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10760 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4D2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 0.15 M AMMONIUM REMARK 280 PHOSPHATE MONOBASIC, 18% (V/V) PEG 400, 5 MM ALA-LEU, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.25000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.30000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.25000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.30000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 VAL A 272 REMARK 465 LYS A 273 REMARK 465 VAL A 274 REMARK 465 THR A 275 REMARK 465 SER A 276 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 GLN A 350 REMARK 465 THR A 411 REMARK 465 THR A 412 REMARK 465 LYS A 413 REMARK 465 LEU A 414 REMARK 465 ALA A 415 REMARK 465 PRO A 416 REMARK 465 LYS A 417 REMARK 465 SER A 472 REMARK 465 LYS A 473 REMARK 465 ARG A 474 REMARK 465 ILE A 475 REMARK 465 GLN A 476 REMARK 465 GLY A 477 REMARK 465 LEU A 478 REMARK 465 MET A 479 REMARK 465 GLN A 480 REMARK 465 GLY A 481 REMARK 465 VAL A 482 REMARK 465 GLU A 483 REMARK 465 ALA A 484 REMARK 465 GLU A 485 REMARK 465 ASN A 486 REMARK 465 LEU A 487 REMARK 465 TYR A 488 REMARK 465 PHE A 489 REMARK 465 GLN A 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA A 516 N LEU A 517 1.33 REMARK 500 O SER A 316 O HOH A 601 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 50 62.57 -101.46 REMARK 500 ILE A 81 -56.79 -125.84 REMARK 500 HIS A 140 62.84 -107.80 REMARK 500 VAL A 304 -75.64 -122.85 REMARK 500 SER A 316 52.54 -116.95 REMARK 500 PRO A 405 58.16 -66.63 REMARK 500 SER A 409 -158.55 -157.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 516 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALA A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU A 517 DBREF 5OXL A 1 483 UNP Q5M4H8 Q5M4H8_STRT2 1 483 SEQADV 5OXL ALA A 484 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL GLU A 485 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL ASN A 486 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL LEU A 487 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL TYR A 488 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL PHE A 489 UNP Q5M4H8 EXPRESSION TAG SEQADV 5OXL GLN A 490 UNP Q5M4H8 EXPRESSION TAG SEQRES 1 A 490 MET GLU ASP LYS GLY LYS THR PHE PHE GLY GLN PRO LEU SEQRES 2 A 490 GLY LEU SER THR LEU PHE MET THR GLU MET TRP GLU ARG SEQRES 3 A 490 PHE SER TYR TYR GLY MET ARG ALA ILE LEU LEU TYR TYR SEQRES 4 A 490 MET TRP PHE LEU ILE SER THR GLY ASP LEU HIS ILE THR SEQRES 5 A 490 ARG ALA THR ALA ALA SER ILE MET ALA ILE TYR ALA SER SEQRES 6 A 490 MET VAL TYR LEU SER GLY THR ILE GLY GLY PHE VAL ALA SEQRES 7 A 490 ASP ARG ILE ILE GLY ALA ARG PRO ALA VAL PHE TRP GLY SEQRES 8 A 490 GLY VAL LEU ILE MET LEU GLY HIS ILE VAL LEU ALA LEU SEQRES 9 A 490 PRO PHE GLY ALA SER ALA LEU PHE GLY SER ILE ILE LEU SEQRES 10 A 490 ILE ILE ILE GLY THR GLY PHE LEU LYS PRO ASN VAL SER SEQRES 11 A 490 THR LEU VAL GLY THR LEU TYR ASP GLU HIS ASP ARG ARG SEQRES 12 A 490 ARG ASP ALA GLY PHE SER ILE PHE VAL PHE GLY ILE ASN SEQRES 13 A 490 LEU GLY ALA PHE ILE ALA PRO LEU ILE VAL GLY ALA ALA SEQRES 14 A 490 GLN GLU ALA ALA GLY TYR HIS VAL ALA PHE SER LEU ALA SEQRES 15 A 490 ALA ILE GLY MET PHE ILE GLY LEU LEU VAL TYR TYR PHE SEQRES 16 A 490 GLY GLY LYS LYS THR LEU ASP PRO HIS TYR LEU ARG PRO SEQRES 17 A 490 THR ASP PRO LEU ALA PRO GLU GLU VAL LYS PRO LEU LEU SEQRES 18 A 490 VAL LYS VAL SER LEU ALA VAL ALA GLY PHE ILE ALA ILE SEQRES 19 A 490 ILE VAL VAL MET ASN LEU VAL GLY TRP ASN SER LEU PRO SEQRES 20 A 490 ALA TYR ILE ASN LEU LEU THR ILE VAL ALA ILE ALA ILE SEQRES 21 A 490 PRO VAL PHE TYR PHE ALA TRP MET ILE SER SER VAL LYS SEQRES 22 A 490 VAL THR SER THR GLU HIS LEU ARG VAL VAL SER TYR ILE SEQRES 23 A 490 PRO LEU PHE ILE ALA ALA VAL LEU PHE TRP ALA ILE GLU SEQRES 24 A 490 GLU GLN GLY SER VAL VAL LEU ALA THR PHE ALA ALA GLU SEQRES 25 A 490 ARG VAL ASP SER SER TRP PHE PRO VAL SER TRP PHE GLN SEQRES 26 A 490 SER LEU ASN PRO LEU PHE ILE MET LEU TYR THR PRO PHE SEQRES 27 A 490 PHE ALA TRP LEU TRP THR ALA TRP LYS LYS ASN GLN PRO SEQRES 28 A 490 SER SER PRO THR LYS PHE ALA VAL GLY LEU MET PHE ALA SEQRES 29 A 490 GLY LEU SER PHE LEU LEU MET ALA ILE PRO GLY ALA LEU SEQRES 30 A 490 TYR GLY THR SER GLY LYS VAL SER PRO LEU TRP LEU VAL SEQRES 31 A 490 GLY SER TRP ALA LEU VAL ILE LEU GLY GLU MET LEU ILE SEQRES 32 A 490 SER PRO VAL GLY LEU SER VAL THR THR LYS LEU ALA PRO SEQRES 33 A 490 LYS ALA PHE ASN SER GLN MET MET SER MET TRP PHE LEU SEQRES 34 A 490 SER SER SER VAL GLY SER ALA LEU ASN ALA GLN LEU VAL SEQRES 35 A 490 THR LEU TYR ASN ALA LYS SER GLU VAL ALA TYR PHE SER SEQRES 36 A 490 TYR PHE GLY LEU GLY SER VAL VAL LEU GLY ILE VAL LEU SEQRES 37 A 490 VAL PHE LEU SER LYS ARG ILE GLN GLY LEU MET GLN GLY SEQRES 38 A 490 VAL GLU ALA GLU ASN LEU TYR PHE GLN HET PO4 A 501 5 HET PO4 A 502 5 HET EPE A 503 15 HET 1PE A 504 16 HET 1PE A 505 16 HET 78N A 506 22 HET 78N A 507 22 HET 78M A 508 22 HET 78N A 509 22 HET 78N A 510 22 HET 78N A 511 22 HET 78N A 512 22 HET 78N A 513 22 HET 78N A 514 22 HET 78N A 515 22 HET ALA A 516 5 HET LEU A 517 9 HETNAM PO4 PHOSPHATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM 78N (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE HETNAM 78M (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE HETNAM ALA ALANINE HETNAM LEU LEUCINE HETSYN EPE HEPES HETSYN 1PE PEG400 HETSYN 78N 7.8 MONOACYLGLYCEROL (2R) HETSYN 78M 7.8 MONOACYLGLYCEROL FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 1PE 2(C10 H22 O6) FORMUL 7 78N 9(C18 H34 O4) FORMUL 9 78M C18 H34 O4 FORMUL 17 ALA C3 H7 N O2 FORMUL 18 LEU C6 H13 N O2 FORMUL 19 HOH *32(H2 O) HELIX 1 AA1 LEU A 13 THR A 46 1 34 HELIX 2 AA2 THR A 52 SER A 70 1 19 HELIX 3 AA3 SER A 70 ILE A 81 1 12 HELIX 4 AA4 GLY A 83 LEU A 104 1 22 HELIX 5 AA5 GLY A 107 SER A 109 5 3 HELIX 6 AA6 ALA A 110 THR A 135 1 26 HELIX 7 AA7 ARG A 143 ALA A 173 1 31 HELIX 8 AA8 GLY A 174 LEU A 201 1 28 HELIX 9 AA9 ASP A 202 ARG A 207 5 6 HELIX 10 AB1 ALA A 213 GLU A 215 5 3 HELIX 11 AB2 GLU A 216 GLY A 242 1 27 HELIX 12 AB3 SER A 245 MET A 268 1 24 HELIX 13 AB4 GLU A 278 SER A 284 1 7 HELIX 14 AB5 TYR A 285 GLN A 301 1 17 HELIX 15 AB6 VAL A 304 VAL A 314 1 11 HELIX 16 AB7 PRO A 320 GLN A 325 5 6 HELIX 17 AB8 SER A 326 TRP A 346 1 21 HELIX 18 AB9 SER A 352 GLY A 379 1 28 HELIX 19 AC1 PRO A 386 MET A 401 1 16 HELIX 20 AC2 ASN A 420 VAL A 442 1 23 HELIX 21 AC3 THR A 443 TYR A 445 5 3 HELIX 22 AC4 SER A 449 LEU A 471 1 23 SITE 1 AC1 5 ASP A 48 GLY A 107 ALA A 108 SER A 109 SITE 2 AC1 5 HOH A 627 SITE 1 AC2 4 ILE A 51 THR A 52 THR A 55 PRO A 247 SITE 1 AC3 5 TYR A 378 LYS A 383 VAL A 384 SER A 385 SITE 2 AC3 5 TRP A 388 SITE 1 AC4 7 TYR A 38 TRP A 41 GLN A 170 GLU A 171 SITE 2 AC4 7 TYR A 175 ALA A 311 VAL A 321 SITE 1 AC5 6 TRP A 343 SER A 353 LYS A 356 LEU A 402 SITE 2 AC5 6 ILE A 403 SER A 404 SITE 1 AC6 5 PRO A 211 ALA A 372 ALA A 376 78N A 514 SITE 2 AC6 5 HOH A 602 SITE 1 AC7 6 LYS A 218 LEU A 221 SER A 225 ILE A 232 SITE 2 AC7 6 TYR A 378 78M A 508 SITE 1 AC8 5 LEU A 370 SER A 385 TRP A 388 GLY A 391 SITE 2 AC8 5 78N A 507 SITE 1 AC9 3 TRP A 318 PHE A 319 TRP A 323 SITE 1 AD1 3 VAL A 177 ALA A 183 PHE A 195 SITE 1 AD2 3 SER A 245 ALA A 248 ASN A 251 SITE 1 AD3 8 ARG A 85 PRO A 86 PHE A 89 TYR A 194 SITE 2 AD3 8 GLY A 197 LYS A 198 LEU A 206 HOH A 617 SITE 1 AD4 3 LEU A 212 PRO A 214 78N A 514 SITE 1 AD5 5 PRO A 214 LEU A 221 ALA A 376 78N A 506 SITE 2 AD5 5 78N A 513 SITE 1 AD6 13 PHE A 9 PHE A 19 SER A 149 ILE A 150 SITE 2 AD6 13 PHE A 153 LEU A 157 LEU A 164 ILE A 165 SITE 3 AD6 13 TRP A 323 THR A 336 ALA A 340 GLY A 407 SITE 4 AD6 13 LEU A 408 SITE 1 AD7 7 TYR A 30 ASN A 156 GLU A 299 ASN A 328 SITE 2 AD7 7 ILE A 332 GLU A 400 LEU A 517 SITE 1 AD8 8 ARG A 26 TYR A 30 TYR A 68 LYS A 126 SITE 2 AD8 8 ILE A 155 TRP A 296 TRP A 427 ALA A 516 CRYST1 102.300 110.600 108.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009217 0.00000