HEADER VIRAL PROTEIN 08-SEP-17 5OY9 TITLE VSV G CR3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN G; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 6 CHAIN: D; COMPND 7 FRAGMENT: UNP RESIDUES 108-144; COMPND 8 SYNONYM: LDL RECEPTOR; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VESICULAR STOMATITIS INDIANA VIRUS (STRAIN SOURCE 3 MUDD-SUMMERS); SOURCE 4 ORGANISM_COMMON: VSIV; SOURCE 5 ORGANISM_TAXID: 11279; SOURCE 6 STRAIN: MUDD-SUMMERS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: LDLR; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.ALBERTINI,L.BELOT,P.LEGRAND,Y.GAUDIN REVDAT 4 17-JAN-24 5OY9 1 HETSYN REVDAT 3 29-JUL-20 5OY9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-APR-18 5OY9 1 JRNL REVDAT 1 21-MAR-18 5OY9 0 JRNL AUTH J.NIKOLIC,L.BELOT,H.RAUX,P.LEGRAND,Y.GAUDIN,A.A ALBERTINI JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF LDL-RECEPTOR FAMILY JRNL TITL 2 MEMBERS BY VSV GLYCOPROTEIN. JRNL REF NAT COMMUN V. 9 1029 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29531262 JRNL DOI 10.1038/S41467-018-03432-4 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8497 - 5.7121 1.00 2717 143 0.2352 0.2705 REMARK 3 2 5.7121 - 4.5352 1.00 2528 133 0.2197 0.2481 REMARK 3 3 4.5352 - 3.9624 1.00 2487 131 0.2206 0.2650 REMARK 3 4 3.9624 - 3.6002 1.00 2458 130 0.3029 0.3062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 148.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 156.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3694 REMARK 3 ANGLE : 0.819 5035 REMARK 3 CHIRALITY : 0.050 538 REMARK 3 PLANARITY : 0.005 644 REMARK 3 DIHEDRAL : 15.330 2179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200005837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10749 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.28600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 5.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2J6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 50 MM TRIS-HCL PH 8.5, REMARK 280 200 MM CACL2, 0.2% DODECYLMALTOSIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 504 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 20 1.56 84.25 REMARK 500 ASN A 31 31.82 -140.27 REMARK 500 ASN A 34 -120.52 60.71 REMARK 500 LYS A 47 -41.89 -136.57 REMARK 500 SER A 48 -83.43 1.38 REMARK 500 ARG A 71 -155.69 -77.63 REMARK 500 SER A 113 71.35 -107.58 REMARK 500 ASP A 170 47.86 -158.55 REMARK 500 ILE A 186 -164.84 -114.25 REMARK 500 ARG A 206 134.91 -179.36 REMARK 500 LYS A 225 -5.93 65.53 REMARK 500 MET A 343 82.98 -63.88 REMARK 500 ASP A 358 67.57 -156.72 REMARK 500 ASP A 359 79.86 -157.47 REMARK 500 GLU A 364 -121.23 42.69 REMARK 500 HIS A 407 127.18 -177.93 REMARK 500 SER D 89 -162.07 -72.55 REMARK 500 ASP D 91 34.51 -84.10 REMARK 500 CYS D 107 62.06 80.74 REMARK 500 ASP D 108 33.09 -151.11 REMARK 500 ARG D 111 78.60 -63.19 REMARK 500 GLU D 119 40.19 -105.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE D 105 O REMARK 620 2 ASP D 108 OD1 63.9 REMARK 620 3 ASP D 110 O 164.9 102.4 REMARK 620 4 ASP D 112 OD2 105.8 102.9 82.7 REMARK 620 5 ASP D 118 OD2 104.7 145.4 82.9 111.7 REMARK 620 6 GLU D 119 OE2 97.6 84.6 73.9 156.5 63.7 REMARK 620 N 1 2 3 4 5 DBREF 5OY9 A 1 410 UNP P0C2X0 VGLG_VSIVM 1 410 DBREF 5OY9 D 87 123 UNP P01130 LDLR_HUMAN 108 144 SEQADV 5OY9 LEU A 41 UNP P0C2X0 ILE 41 CONFLICT SEQADV 5OY9 HIS A 80 UNP P0C2X0 GLN 80 CONFLICT SEQRES 1 A 410 LYS PHE THR ILE VAL PHE PRO HIS ASN GLN LYS GLY ASN SEQRES 2 A 410 TRP LYS ASN VAL PRO SER ASN TYR HIS TYR CYS PRO SER SEQRES 3 A 410 SER SER ASP LEU ASN TRP HIS ASN ASP LEU ILE GLY THR SEQRES 4 A 410 ALA LEU GLN VAL LYS MET PRO LYS SER HIS MLZ ALA ILE SEQRES 5 A 410 GLN ALA ASP GLY TRP MET CYS HIS ALA SER LYS TRP VAL SEQRES 6 A 410 THR THR CYS ASP PHE ARG TRP TYR GLY PRO LYS TYR ILE SEQRES 7 A 410 THR HIS SER ILE ARG SER PHE THR PRO SER VAL GLU GLN SEQRES 8 A 410 CYS LYS GLU SER ILE GLU GLN THR LYS GLN GLY THR TRP SEQRES 9 A 410 LEU ASN PRO GLY PHE PRO PRO GLN SER CYS GLY TYR ALA SEQRES 10 A 410 THR VAL THR ASP ALA GLU ALA VAL ILE VAL GLN VAL THR SEQRES 11 A 410 PRO HIS HIS VAL LEU VAL ASP GLU TYR THR GLY GLU TRP SEQRES 12 A 410 VAL ASP SER GLN PHE ILE ASN GLY LYS CYS SER ASN TYR SEQRES 13 A 410 ILE CYS PRO THR VAL HIS ASN SER THR THR TRP HIS SER SEQRES 14 A 410 ASP TYR LYS VAL LYS GLY LEU CYS ASP SER ASN LEU ILE SEQRES 15 A 410 SER MET ASP ILE THR PHE PHE SER GLU ASP GLY GLU LEU SEQRES 16 A 410 SER SER LEU GLY LYS GLU GLY THR GLY PHE ARG SER ASN SEQRES 17 A 410 TYR PHE ALA TYR GLU THR GLY GLY LYS ALA CYS LYS MET SEQRES 18 A 410 GLN TYR CYS LYS HIS TRP GLY VAL ARG LEU PRO SER GLY SEQRES 19 A 410 VAL TRP PHE GLU MET ALA ASP LYS ASP LEU PHE ALA ALA SEQRES 20 A 410 ALA ARG PHE PRO GLU CYS PRO GLU GLY SER SER ILE SER SEQRES 21 A 410 ALA PRO SER GLN THR SER VAL ASP VAL SER LEU ILE GLN SEQRES 22 A 410 ASP VAL GLU ARG ILE LEU ASP TYR SER LEU CYS GLN GLU SEQRES 23 A 410 THR TRP SER LYS ILE ARG ALA GLY LEU PRO ILE SER PRO SEQRES 24 A 410 VAL ASP LEU SER TYR LEU ALA PRO LYS ASN PRO GLY THR SEQRES 25 A 410 GLY PRO ALA PHE THR ILE ILE ASN GLY THR LEU LYS TYR SEQRES 26 A 410 PHE GLU THR ARG TYR ILE ARG VAL ASP ILE ALA ALA PRO SEQRES 27 A 410 ILE LEU SER ARG MET VAL GLY MET ILE SER GLY THR THR SEQRES 28 A 410 THR GLU ARG GLU LEU TRP ASP ASP TRP ALA PRO TYR GLU SEQRES 29 A 410 ASP VAL GLU ILE GLY PRO ASN GLY VAL LEU ARG THR SER SEQRES 30 A 410 SER GLY TYR LYS PHE PRO LEU TYR MET ILE GLY HIS GLY SEQRES 31 A 410 MET LEU ASP SER ASP LEU HIS LEU SER SER LYS ALA GLN SEQRES 32 A 410 VAL PHE GLU HIS PRO HIS ILE SEQRES 1 D 37 THR CYS SER GLN ASP GLU PHE ARG CYS HIS ASP GLY LYS SEQRES 2 D 37 CYS ILE SER ARG GLN PHE VAL CYS ASP SER ASP ARG ASP SEQRES 3 D 37 CYS LEU ASP GLY SER ASP GLU ALA SER CYS PRO MODRES 5OY9 MLZ A 50 LYS MODIFIED RESIDUE HET MLZ A 50 10 HET NAG B 1 14 HET NAG B 2 14 HET NAG A 503 14 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA D1001 1 HETNAM MLZ N-METHYL-LYSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *3(H2 O) HELIX 1 AA1 LYS A 47 ALA A 51 5 5 HELIX 2 AA2 SER A 88 GLN A 101 1 14 HELIX 3 AA3 PHE A 148 ASN A 150 5 3 HELIX 4 AA4 GLU A 194 LEU A 198 5 5 HELIX 5 AA5 ASP A 241 ARG A 249 1 9 HELIX 6 AA6 ASP A 268 ILE A 272 5 5 HELIX 7 AA7 GLN A 273 ALA A 293 1 21 HELIX 8 AA8 SER A 298 TYR A 304 1 7 HELIX 9 AA9 PRO A 370 GLY A 372 5 3 HELIX 10 AB1 PHE A 382 ILE A 387 1 6 HELIX 11 AB2 ASP A 393 HIS A 397 5 5 HELIX 12 AB3 GLN D 104 VAL D 106 5 3 SHEET 1 AA1 3 PHE A 2 PRO A 7 0 SHEET 2 AA1 3 THR A 322 ILE A 335 -1 O VAL A 333 N ILE A 4 SHEET 3 AA1 3 GLY A 311 ILE A 319 -1 N GLY A 313 O THR A 328 SHEET 1 AA2 4 LYS A 15 ASN A 16 0 SHEET 2 AA2 4 THR A 322 ILE A 335 -1 O TYR A 325 N LYS A 15 SHEET 3 AA2 4 VAL A 344 ILE A 347 -1 O MET A 346 N ASP A 334 SHEET 4 AA2 4 GLU A 353 GLU A 355 -1 O ARG A 354 N GLY A 345 SHEET 1 AA3 7 PHE A 210 THR A 214 0 SHEET 2 AA3 7 GLY A 204 SER A 207 -1 N PHE A 205 O GLU A 213 SHEET 3 AA3 7 ILE A 182 SER A 190 -1 N PHE A 189 O GLY A 204 SHEET 4 AA3 7 ILE A 37 MET A 45 -1 N VAL A 43 O MET A 184 SHEET 5 AA3 7 TRP A 236 MET A 239 -1 O GLU A 238 N LYS A 44 SHEET 6 AA3 7 HIS A 226 ARG A 230 -1 N VAL A 229 O PHE A 237 SHEET 7 AA3 7 CYS A 219 TYR A 223 -1 N CYS A 219 O ARG A 230 SHEET 1 AA4 3 HIS A 80 PHE A 85 0 SHEET 2 AA4 3 GLY A 56 THR A 66 -1 N LYS A 63 O ARG A 83 SHEET 3 AA4 3 GLU A 123 PRO A 131 -1 O GLN A 128 N HIS A 60 SHEET 1 AA5 4 HIS A 80 PHE A 85 0 SHEET 2 AA5 4 GLY A 56 THR A 66 -1 N LYS A 63 O ARG A 83 SHEET 3 AA5 4 THR A 165 SER A 169 -1 O THR A 166 N CYS A 59 SHEET 4 AA5 4 ILE A 157 PRO A 159 -1 N CYS A 158 O TRP A 167 SHEET 1 AA6 3 LEU A 135 VAL A 136 0 SHEET 2 AA6 3 TRP A 143 VAL A 144 -1 O VAL A 144 N LEU A 135 SHEET 3 AA6 3 LYS A 152 CYS A 153 -1 O CYS A 153 N TRP A 143 SHEET 1 AA7 2 PRO A 296 ILE A 297 0 SHEET 2 AA7 2 SER A 400 LYS A 401 -1 O SER A 400 N ILE A 297 SHEET 1 AA8 5 ILE A 339 LEU A 340 0 SHEET 2 AA8 5 GLY A 379 LYS A 381 -1 O TYR A 380 N LEU A 340 SHEET 3 AA8 5 LEU A 374 THR A 376 -1 N LEU A 374 O LYS A 381 SHEET 4 AA8 5 VAL A 366 ILE A 368 -1 N GLU A 367 O ARG A 375 SHEET 5 AA8 5 ALA A 361 TYR A 363 -1 N TYR A 363 O VAL A 366 SHEET 1 AA9 2 GLU D 92 ARG D 94 0 SHEET 2 AA9 2 CYS D 100 SER D 102 -1 O ILE D 101 N PHE D 93 SSBOND 1 CYS A 24 CYS A 284 1555 1555 2.04 SSBOND 2 CYS A 59 CYS A 92 1555 1555 2.04 SSBOND 3 CYS A 68 CYS A 114 1555 1555 2.03 SSBOND 4 CYS A 153 CYS A 158 1555 1555 2.03 SSBOND 5 CYS A 177 CYS A 224 1555 1555 2.03 SSBOND 6 CYS A 219 CYS A 253 1555 1555 2.05 SSBOND 7 CYS D 88 CYS D 100 1555 1555 2.04 SSBOND 8 CYS D 95 CYS D 113 1555 1555 2.04 SSBOND 9 CYS D 107 CYS D 122 1555 1555 2.03 LINK C HIS A 49 N MLZ A 50 1555 1555 1.33 LINK C MLZ A 50 N ALA A 51 1555 1555 1.33 LINK ND2 ASN A 163 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 320 C1 NAG A 503 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O TRP A 360 CA CA A 505 1555 1555 2.57 LINK O PHE D 105 CA CA D1001 1555 1555 2.29 LINK OD1 ASP D 108 CA CA D1001 1555 1555 2.87 LINK O ASP D 110 CA CA D1001 1555 1555 2.69 LINK OD2 ASP D 112 CA CA D1001 1555 1555 2.48 LINK OD2 ASP D 118 CA CA D1001 1555 1555 2.81 LINK OE2 GLU D 119 CA CA D1001 1555 1555 2.46 CRYST1 122.350 122.350 197.810 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008173 0.004719 0.000000 0.00000 SCALE2 0.000000 0.009438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005055 0.00000