HEADER HYDROLASE/TRANSFERASE 03-MAY-19 5QQD TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF KALIRIN/RAC1 TITLE 2 IN COMPLEX WITH Z56880342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN COMPND 5 TC25,P21-RAC1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: KALIRIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: HUNTINGTIN-ASSOCIATED PROTEIN-INTERACTING PROTEIN,PROTEIN COMPND 11 DUO,SERINE/THREONINE-PROTEIN KINASE WITH DBL- AND PLECKSTRIN HOMOLOGY COMPND 12 DOMAIN; COMPND 13 EC: 2.7.11.1; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: KALRN, DUET, DUO, HAPIP, TRAD; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, XCHEMEXPLORER, HYDROLASE- KEYWDS 2 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.GRAY,T.KROJER,R.TALON,A.DOUANGAMATH,C.JIMENEZ ANTUNEZ,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.EDWARDS,P.E.BRENNAN,F.VON DELFT REVDAT 2 06-MAR-24 5QQD 1 REMARK REVDAT 1 18-DEC-19 5QQD 0 JRNL AUTH J.L.GRAY,T.KROJER,R.TALON,A.DOUANGAMATH,C.JIMENEZ ANTUNEZ, JRNL AUTH 2 C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,P.E.BRENNAN,F.VON DELFT JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : 0.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2881 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2641 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3919 ; 1.526 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6120 ; 1.391 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 7.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;34.195 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;14.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3245 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1443 ; 2.798 ; 3.723 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1444 ; 2.797 ; 3.723 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1804 ; 4.047 ; 5.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5QQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1001402274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 342.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.90 REMARK 200 R MERGE (I) : 0.51400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : 2.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5O33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5 24% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 228.38667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.19333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.29000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.09667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 285.48333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 228.38667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.19333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.09667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.29000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 285.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 1230 REMARK 465 MET B 1231 REMARK 465 VAL B 1411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 MET A 45 CG SD CE REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 132 CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS B1234 NZ REMARK 470 PHE B1236 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1269 CG CD OE1 OE2 REMARK 470 LYS B1277 NZ REMARK 470 LYS B1298 CE NZ REMARK 470 LYS B1329 NZ REMARK 470 GLU B1348 CG CD OE1 OE2 REMARK 470 GLN B1351 CG CD OE1 NE2 REMARK 470 GLU B1385 CG CD OE1 OE2 REMARK 470 GLU B1386 CG CD OE1 OE2 REMARK 470 LYS B1388 CG CD CE NZ REMARK 470 LYS B1392 CG CD CE NZ REMARK 470 GLU B1396 CG CD OE1 OE2 REMARK 470 LYS B1403 NZ REMARK 470 HIS B1410 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1543 O HOH B 1633 2.08 REMARK 500 O HOH A 361 O HOH A 444 2.08 REMARK 500 OD2 ASP A 38 O HOH A 301 2.12 REMARK 500 O HOH B 1528 O HOH B 1564 2.17 REMARK 500 OE2 GLU B 1308 O HOH B 1501 2.18 REMARK 500 O HOH A 311 O HOH A 379 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 91 OE2 GLU A 91 10665 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 129.50 -38.16 REMARK 500 LYS A 96 -54.06 -131.83 REMARK 500 THR B1258 -79.38 -118.41 REMARK 500 PRO B1271 134.53 -35.01 REMARK 500 HIS B1341 -20.16 -141.11 REMARK 500 GLU B1385 179.10 -59.89 REMARK 500 LYS B1388 51.68 -143.56 REMARK 500 GLU B1390 21.48 -68.23 REMARK 500 LEU B1391 -46.63 -130.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 477 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JGA A 202 DBREF 5QQD A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 5QQD B 1232 1411 UNP O60229 KALRN_HUMAN 1280 1459 SEQADV 5QQD SER A 0 UNP P63000 EXPRESSION TAG SEQADV 5QQD SER B 1230 UNP O60229 EXPRESSION TAG SEQADV 5QQD MET B 1231 UNP O60229 EXPRESSION TAG SEQADV 5QQD VAL B 1370 UNP O60229 ILE 1418 CONFLICT SEQRES 1 A 178 SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 2 A 178 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 3 A 178 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 4 A 178 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 5 A 178 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 A 178 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 7 A 178 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 8 A 178 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 9 A 178 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 10 A 178 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 11 A 178 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 12 A 178 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 13 A 178 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 14 A 178 PHE ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 182 SER MET ARG LYS LYS GLU PHE ILE MET ALA GLU LEU LEU SEQRES 2 B 182 GLN THR GLU LYS ALA TYR VAL ARG ASP LEU HIS GLU CYS SEQRES 3 B 182 LEU GLU THR TYR LEU TRP GLU MET THR SER GLY VAL GLU SEQRES 4 B 182 GLU ILE PRO PRO GLY ILE LEU ASN LYS GLU HIS ILE ILE SEQRES 5 B 182 PHE GLY ASN ILE GLN GLU ILE TYR ASP PHE HIS ASN ASN SEQRES 6 B 182 ILE PHE LEU LYS GLU LEU GLU LYS TYR GLU GLN LEU PRO SEQRES 7 B 182 GLU ASP VAL GLY HIS CYS PHE VAL THR TRP ALA ASP LYS SEQRES 8 B 182 PHE GLN MET TYR VAL THR TYR CYS LYS ASN LYS PRO ASP SEQRES 9 B 182 SER ASN GLN LEU ILE LEU GLU HIS ALA GLY THR PHE PHE SEQRES 10 B 182 ASP GLU ILE GLN GLN ARG HIS GLY LEU ALA ASN SER ILE SEQRES 11 B 182 SER SER TYR LEU ILE LYS PRO VAL GLN ARG VAL THR LYS SEQRES 12 B 182 TYR GLN LEU LEU LEU LYS GLU LEU LEU THR CYS CYS GLU SEQRES 13 B 182 GLU GLY LYS GLY GLU LEU LYS ASP GLY LEU GLU VAL MET SEQRES 14 B 182 LEU SER VAL PRO LYS LYS ALA ASN ASP ALA MET HIS VAL HET EDO A 201 4 HET JGA A 202 12 HETNAM EDO 1,2-ETHANEDIOL HETNAM JGA N-ETHYL-N'-(5-METHYL-1,2-OXAZOL-3-YL)UREA HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 JGA C7 H11 N3 O2 FORMUL 5 HOH *339(H2 O) HELIX 1 AA1 ASP A 11 VAL A 14 5 4 HELIX 2 AA2 GLY A 15 ASN A 26 1 12 HELIX 3 AA3 LEU A 67 TYR A 72 5 6 HELIX 4 AA4 SER A 86 LYS A 96 1 11 HELIX 5 AA5 LYS A 96 CYS A 105 1 10 HELIX 6 AA6 LYS A 116 ARG A 120 5 5 HELIX 7 AA7 ASP A 122 LYS A 132 1 11 HELIX 8 AA8 THR A 138 GLY A 150 1 13 HELIX 9 AA9 GLY A 164 ALA A 175 1 12 HELIX 10 AB1 LYS B 1233 THR B 1258 1 26 HELIX 11 AB2 THR B 1258 SER B 1265 1 8 HELIX 12 AB3 PRO B 1271 LEU B 1275 5 5 HELIX 13 AB4 LYS B 1277 GLY B 1283 1 7 HELIX 14 AB5 ASN B 1284 ILE B 1295 1 12 HELIX 15 AB6 ILE B 1295 TYR B 1303 1 9 HELIX 16 AB7 LEU B 1306 ASP B 1309 5 4 HELIX 17 AB8 VAL B 1310 TRP B 1317 1 8 HELIX 18 AB9 ALA B 1318 PHE B 1321 5 4 HELIX 19 AC1 GLN B 1322 ASN B 1330 1 9 HELIX 20 AC2 ASN B 1330 ALA B 1342 1 13 HELIX 21 AC3 THR B 1344 GLY B 1354 1 11 HELIX 22 AC4 SER B 1358 THR B 1371 1 14 HELIX 23 AC5 LYS B 1372 CYS B 1384 1 13 HELIX 24 AC6 LYS B 1388 ALA B 1408 1 21 SHEET 1 AA1 6 TYR A 40 VAL A 46 0 SHEET 2 AA1 6 LYS A 49 TRP A 56 -1 O VAL A 51 N VAL A 44 SHEET 3 AA1 6 ALA A 3 VAL A 9 1 N ILE A 4 O GLY A 54 SHEET 4 AA1 6 VAL A 77 SER A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 ILE A 110 THR A 115 1 O ILE A 111 N ILE A 80 SHEET 6 AA1 6 LYS A 153 GLU A 156 1 O LEU A 155 N LEU A 112 SITE 1 AC1 4 HOH A 359 HOH A 386 THR B1316 TRP B1317 SITE 1 AC2 7 VAL A 14 GLY A 15 THR A 115 LYS A 116 SITE 2 AC2 7 ASP A 118 SER A 158 ALA A 159 CRYST1 62.836 62.836 342.580 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015914 0.009188 0.000000 0.00000 SCALE2 0.000000 0.018376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002919 0.00000