HEADER TRANSFERASE 25-JUN-19 5QT1 TITLE PANDDA ANALYSIS GROUP DEPOSITION -- PARTIAL OCCUPANCY INTERPRETATION TITLE 2 OF PANDDA EVENT MAP: SETDB1 IN COMPLEX WITH FMOMB000017A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 COMPND 5 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET COMPND 6 DOMAIN BIFURCATED 1; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, ESET, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.HARDING,W.TEMPEL,A.DOUANGAMATH,J.BRANDAO-NETO,P.M.COLLINS, AUTHOR 2 T.KROJER,P.MADER,M.SCHAPIRA,F.VON DELFT,C.BOUNTRA,A.M.EDWARDS, AUTHOR 3 C.H.ARROWSMITH,V.SANTHAKUMAR REVDAT 2 06-MAR-24 5QT1 1 REMARK REVDAT 1 21-AUG-19 5QT1 0 JRNL AUTH R.J.HARDING,W.TEMPEL,A.DOUANGAMATH,J.BRANDAO-NETO, JRNL AUTH 2 P.M.COLLINS,T.KROJER,P.MADER,M.SCHAPIRA,F.VON DELFT, JRNL AUTH 3 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,V.SANTHAKUMAR JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2425 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1926 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2973 ; 1.631 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4464 ; 1.359 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;26.945 ;20.862 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;11.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2573 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 521 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1183 ; 1.869 ; 2.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1180 ; 1.871 ; 2.331 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 2.987 ; 3.460 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5QT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1001402370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 43.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3DLM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.2M LITHIUM SULFATE, REMARK 280 0.1M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.89500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.89500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 SER A 186 REMARK 465 SER A 187 REMARK 465 GLY A 188 REMARK 465 ARG A 189 REMARK 465 MET A 401 REMARK 465 LYS A 402 REMARK 465 THR A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 215 CD CE NZ REMARK 470 LYS A 233 CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 239 NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 267 NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 274 CG1 CG2 REMARK 470 LYS A 288 CE NZ REMARK 470 LYS A 290 NZ REMARK 470 ILE A 327 CG2 CD1 REMARK 470 LYS A 355 CE NZ REMARK 470 LYS A 364 NZ REMARK 470 ASP A 381 OD1 OD2 REMARK 470 SER A 400 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 283 CD GLU A 283 OE1 0.076 REMARK 500 GLU A 369 CD GLU A 369 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 201 -2.32 91.58 REMARK 500 SER A 201 -15.93 99.58 REMARK 500 ASP A 235 0.23 -62.87 REMARK 500 ASN A 236 50.99 -103.24 REMARK 500 LYS A 237 -12.29 93.55 REMARK 500 LYS A 237 -155.20 -165.23 REMARK 500 ASP A 250 40.28 -93.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DSJ A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 544 DBREF 5QT1 A 196 397 UNP Q15047 SETB1_HUMAN 199 400 SEQADV 5QT1 MET A 179 UNP Q15047 INITIATING METHIONINE SEQADV 5QT1 HIS A 180 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 HIS A 181 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 HIS A 182 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 HIS A 183 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 HIS A 184 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 HIS A 185 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 SER A 186 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 SER A 187 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 GLY A 188 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 ARG A 189 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 GLU A 190 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 ASN A 191 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 LEU A 192 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 TYR A 193 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 PHE A 194 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 GLN A 195 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 MET A 398 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 PHE A 399 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 SER A 400 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 MET A 401 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 LYS A 402 UNP Q15047 EXPRESSION TAG SEQADV 5QT1 THR A 403 UNP Q15047 EXPRESSION TAG SEQRES 1 A 225 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 225 LEU TYR PHE GLN GLY ASP LEU ILE VAL SER MET ARG ILE SEQRES 3 A 225 LEU GLY LYS LYS ARG THR LYS THR TRP HIS LYS GLY THR SEQRES 4 A 225 LEU ILE ALA ILE GLN THR VAL GLY PRO GLY LYS LYS TYR SEQRES 5 A 225 LYS VAL LYS PHE ASP ASN LYS GLY LYS SER LEU LEU SER SEQRES 6 A 225 GLY ASN HIS ILE ALA TYR ASP TYR HIS PRO PRO ALA ASP SEQRES 7 A 225 LYS LEU TYR VAL GLY SER ARG VAL VAL ALA LYS TYR LYS SEQRES 8 A 225 ASP GLY ASN GLN VAL TRP LEU TYR ALA GLY ILE VAL ALA SEQRES 9 A 225 GLU THR PRO ASN VAL LYS ASN LYS LEU ARG PHE LEU ILE SEQRES 10 A 225 PHE PHE ASP ASP GLY TYR ALA SER TYR VAL THR GLN SER SEQRES 11 A 225 GLU LEU TYR PRO ILE CYS ARG PRO LEU LYS LYS THR TRP SEQRES 12 A 225 GLU ASP ILE GLU ASP ILE SER CYS ARG ASP PHE ILE GLU SEQRES 13 A 225 GLU TYR VAL THR ALA TYR PRO ASN ARG PRO MET VAL LEU SEQRES 14 A 225 LEU LYS SER GLY GLN LEU ILE LYS THR GLU TRP GLU GLY SEQRES 15 A 225 THR TRP TRP LYS SER ARG VAL GLU GLU VAL ASP GLY SER SEQRES 16 A 225 LEU VAL ARG ILE LEU PHE LEU ASP ASP LYS ARG CYS GLU SEQRES 17 A 225 TRP ILE TYR ARG GLY SER THR ARG LEU GLU PRO MET PHE SEQRES 18 A 225 SER MET LYS THR HET DMS A 501 4 HET DMS A 502 4 HET EDO A 503 4 HET DSJ A 504 11 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX A 516 1 HET UNX A 517 1 HET UNX A 518 1 HET UNX A 519 1 HET UNX A 520 1 HET UNX A 521 1 HET UNX A 522 1 HET UNX A 523 1 HET UNX A 524 1 HET UNX A 525 1 HET UNX A 526 1 HET UNX A 527 1 HET UNX A 528 1 HET UNX A 529 1 HET UNX A 530 1 HET UNX A 531 1 HET UNX A 532 1 HET UNX A 533 1 HET UNX A 534 1 HET UNX A 535 1 HET UNX A 536 1 HET UNX A 537 1 HET UNX A 538 1 HET UNX A 539 1 HET UNX A 540 1 HET UNX A 541 1 HET UNX A 542 1 HET SO4 A 543 5 HET SO4 A 544 5 HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DSJ 1-(4-AMINO-2-HYDROXYPHENYL)ETHAN-1-ONE HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DMS 2(C2 H6 O S) FORMUL 4 EDO C2 H6 O2 FORMUL 5 DSJ C8 H9 N O2 FORMUL 6 UNX 38(X) FORMUL 44 SO4 2(O4 S 2-) FORMUL 46 HOH *102(H2 O) HELIX 1 AA1 SER A 243 ASN A 245 5 3 HELIX 2 AA2 PRO A 254 LEU A 258 5 5 HELIX 3 AA3 THR A 306 SER A 308 5 3 HELIX 4 AA4 LYS A 319 ILE A 324 5 6 HELIX 5 AA5 ASP A 326 TYR A 340 1 15 HELIX 6 AA6 LEU A 395 SER A 400 1 6 SHEET 1 AA1 4 ASN A 191 LEU A 192 0 SHEET 2 AA1 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA1 4 GLY A 227 PHE A 234 -1 O LYS A 229 N GLN A 222 SHEET 4 AA1 4 LYS A 239 LEU A 242 -1 O LEU A 242 N TYR A 230 SHEET 1 AA2 4 ASN A 191 LEU A 192 0 SHEET 2 AA2 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA2 4 ARG A 203 LYS A 207 -1 N ILE A 204 O GLY A 216 SHEET 4 AA2 4 ILE A 247 ALA A 248 -1 O ALA A 248 N LEU A 205 SHEET 1 AA3 2 PHE A 194 GLN A 195 0 SHEET 2 AA3 2 LEU A 198 ILE A 199 -1 O LEU A 198 N GLN A 195 SHEET 1 AA4 5 ALA A 302 VAL A 305 0 SHEET 2 AA4 5 PHE A 293 PHE A 297 -1 N PHE A 293 O VAL A 305 SHEET 3 AA4 5 GLN A 273 GLU A 283 -1 N ALA A 282 O LEU A 294 SHEET 4 AA4 5 ARG A 263 ASP A 270 -1 N ASP A 270 O GLN A 273 SHEET 5 AA4 5 LEU A 310 PRO A 312 -1 O TYR A 311 N VAL A 265 SHEET 1 AA5 4 LEU A 353 TRP A 358 0 SHEET 2 AA5 4 THR A 361 ASP A 371 -1 O THR A 361 N TRP A 358 SHEET 3 AA5 4 LEU A 374 PHE A 379 -1 O LEU A 378 N ARG A 366 SHEET 4 AA5 4 ARG A 384 TYR A 389 -1 O GLU A 386 N ILE A 377 CISPEP 1 TYR A 340 PRO A 341 0 10.45 SITE 1 AC1 4 LYS A 207 LYS A 208 LYS A 211 HOH A 655 SITE 1 AC2 5 TRP A 358 TRP A 363 PHE A 379 ASP A 382 SITE 2 AC2 5 HOH A 642 SITE 1 AC3 5 TYR A 193 SER A 262 THR A 320 HOH A 613 SITE 2 AC3 5 HOH A 661 SITE 1 AC4 7 PHE A 296 PHE A 297 GLY A 300 TYR A 301 SITE 2 AC4 7 CYS A 329 PHE A 332 ILE A 333 SITE 1 AC5 5 HIS A 214 LYS A 215 HOH A 601 HOH A 624 SITE 2 AC5 5 HOH A 637 SITE 1 AC6 5 ARG A 209 TRP A 363 LYS A 364 ASP A 381 SITE 2 AC6 5 HOH A 603 CRYST1 55.790 64.050 70.810 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014122 0.00000