HEADER SIGNALING PROTEIN 28-JAN-20 5QUA TITLE CRYSTAL STRUCTURE OF SWAPPED HUMAN NCK SH3.1 DOMAIN, 1.5A, C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NCK ADAPTOR PROTEIN 1,NCK-1,SH2/SH3 ADAPTOR PROTEIN NCK- COMPND 5 ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCK1, NCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS SH3 DOMAIN, ADAPTOR, PEPTIDE BINDING, SIGNALING PROTEIN, DOMAIN SWAP EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH REVDAT 6 03-APR-24 5QUA 1 JRNL REVDAT 5 06-MAR-24 5QUA 1 REMARK REVDAT 4 30-JUN-21 5QUA 1 JRNL REVDAT 3 12-MAY-21 5QUA 1 REMARK REVDAT 2 21-OCT-20 5QUA 1 REMARK REVDAT 1 12-FEB-20 5QUA 0 JRNL AUTH K.RICHTER,A.C.RUFER,M.MULLER,D.BURGER,F.CASAGRANDE, JRNL AUTH 2 T.GROSSENBACHER,S.HUBER,M.N.HUG,P.KOLDEWEY,A.D'OSUALDO, JRNL AUTH 3 D.SCHLATTER,T.STOLL,M.G.RUDOLPH JRNL TITL SMALL MOLECULE AX-024 REDUCES T CELL PROLIFERATION JRNL TITL 2 INDEPENDENTLY OF CD3ε/NCK1 INTERACTION, WHICH IS JRNL TITL 3 GOVERNED BY A DOMAIN SWAP IN THE NCK1-SH3.1 DOMAIN. JRNL REF J.BIOL.CHEM. V. 295 7849 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32317279 JRNL DOI 10.1074/JBC.RA120.012788 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.8 REMARK 3 NUMBER OF REFLECTIONS : 14743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.4460 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.959 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 977 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 903 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1321 ; 1.723 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2091 ; 1.312 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 112 ; 7.913 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.722 ;22.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 183 ;15.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 115 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1083 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 221 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7790 -34.0400 0.6480 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.0505 REMARK 3 T33: 0.0577 T12: 0.0014 REMARK 3 T13: -0.0502 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 6.2003 L22: 8.7774 REMARK 3 L33: 8.7748 L12: -1.1457 REMARK 3 L13: 3.0177 L23: 0.5809 REMARK 3 S TENSOR REMARK 3 S11: 0.2851 S12: 0.3301 S13: -0.5182 REMARK 3 S21: -1.2250 S22: 0.1048 S23: 0.2049 REMARK 3 S31: 0.2980 S32: 0.1307 S33: -0.3899 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6210 -21.7760 11.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.3623 T22: 0.1549 REMARK 3 T33: 0.0620 T12: 0.0333 REMARK 3 T13: -0.0498 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 27.8760 L22: 21.9897 REMARK 3 L33: 5.4297 L12: -18.6048 REMARK 3 L13: 4.7439 L23: -3.8831 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.4840 S13: 1.1360 REMARK 3 S21: 0.8178 S22: -0.4779 S23: -0.8726 REMARK 3 S31: -1.1585 S32: -0.4205 S33: 0.3908 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0090 -32.8470 4.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.1911 REMARK 3 T33: 0.2972 T12: -0.0034 REMARK 3 T13: -0.0450 T23: -0.1049 REMARK 3 L TENSOR REMARK 3 L11: 8.3067 L22: 5.8336 REMARK 3 L33: 8.7924 L12: -0.6864 REMARK 3 L13: 3.7355 L23: -4.3616 REMARK 3 S TENSOR REMARK 3 S11: 0.2384 S12: -0.2312 S13: -1.0467 REMARK 3 S21: -0.2548 S22: 0.0142 S23: 0.7045 REMARK 3 S31: 0.3199 S32: -0.9795 S33: -0.2527 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6410 -26.4500 -7.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.4961 T22: 0.1665 REMARK 3 T33: 0.1810 T12: 0.1090 REMARK 3 T13: -0.1983 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 9.5540 L22: 15.1787 REMARK 3 L33: 7.9987 L12: 3.3191 REMARK 3 L13: -1.4895 L23: -10.9539 REMARK 3 S TENSOR REMARK 3 S11: 0.5464 S12: 1.1089 S13: -0.4226 REMARK 3 S21: -1.9033 S22: 0.0057 S23: 0.6447 REMARK 3 S31: 1.4779 S32: 0.0992 S33: -0.5521 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9800 -11.6830 -2.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: 0.1074 REMARK 3 T33: 0.0275 T12: 0.0351 REMARK 3 T13: 0.0087 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.8741 L22: 6.3222 REMARK 3 L33: 3.0983 L12: -0.3193 REMARK 3 L13: 0.4883 L23: 1.7843 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.0356 S13: -0.0002 REMARK 3 S21: 0.1659 S22: -0.0779 S23: -0.2100 REMARK 3 S31: 0.2957 S32: 0.2733 S33: -0.0292 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 6 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8040 -6.6110 -2.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.2398 REMARK 3 T33: 0.3009 T12: 0.0082 REMARK 3 T13: 0.0432 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 12.0265 L22: 11.5661 REMARK 3 L33: 18.1035 L12: 1.1345 REMARK 3 L13: 12.6576 L23: -6.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.3155 S13: -0.7149 REMARK 3 S21: -0.1363 S22: -0.2992 S23: -1.6416 REMARK 3 S31: 0.1022 S32: 0.5430 S33: 0.2651 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7890 -9.6120 -4.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: 0.1200 REMARK 3 T33: 0.0308 T12: 0.0282 REMARK 3 T13: 0.0014 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.4231 L22: 6.2807 REMARK 3 L33: 5.0157 L12: 0.7976 REMARK 3 L13: 1.1119 L23: 1.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0776 S13: -0.0387 REMARK 3 S21: -0.2361 S22: -0.1399 S23: 0.1617 REMARK 3 S31: 0.0006 S32: -0.1897 S33: 0.1356 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6520 -16.4430 0.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1994 REMARK 3 T33: 0.1917 T12: 0.0580 REMARK 3 T13: -0.0802 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 4.6829 L22: 22.7735 REMARK 3 L33: 6.2492 L12: 1.5893 REMARK 3 L13: -3.4819 L23: 7.8386 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: -0.6256 S13: -0.2296 REMARK 3 S21: 0.1404 S22: 0.0876 S23: -0.9837 REMARK 3 S31: -0.0410 S32: 0.5826 S33: -0.1891 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 40 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9620 -26.6800 -1.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.1218 REMARK 3 T33: 0.2335 T12: 0.1081 REMARK 3 T13: -0.1979 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 9.1481 L22: 14.9288 REMARK 3 L33: 6.0899 L12: 1.4227 REMARK 3 L13: 1.1720 L23: -4.4997 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.2728 S13: -0.3707 REMARK 3 S21: -1.3619 S22: -0.2620 S23: 1.1454 REMARK 3 S31: -0.1498 S32: -0.5777 S33: 0.2704 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7900 -30.9130 1.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1017 REMARK 3 T33: 0.1468 T12: 0.0150 REMARK 3 T13: -0.0307 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 5.5015 L22: 7.5283 REMARK 3 L33: 7.0475 L12: -4.2475 REMARK 3 L13: 0.5613 L23: -1.9716 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.2456 S13: -0.6967 REMARK 3 S21: -0.4898 S22: -0.2202 S23: 0.6670 REMARK 3 S31: 0.3917 S32: -0.3849 S33: 0.1490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5QUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1001402415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00005 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.51 REMARK 200 R MERGE FOR SHELL (I) : 7.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS/HCL PH 6.5, 2 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.59500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.59500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -27 REMARK 465 GLY A -26 REMARK 465 GLY A -25 REMARK 465 LEU A -24 REMARK 465 ASN A -23 REMARK 465 ASP A -22 REMARK 465 ILE A -21 REMARK 465 PHE A -20 REMARK 465 GLU A -19 REMARK 465 ALA A -18 REMARK 465 GLN A -17 REMARK 465 LYS A -16 REMARK 465 ILE A -15 REMARK 465 GLU A -14 REMARK 465 TRP A -13 REMARK 465 HIS A -12 REMARK 465 GLU A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 57 REMARK 465 ASN A 58 REMARK 465 SER A 59 REMARK 465 SER B -27 REMARK 465 GLY B -26 REMARK 465 GLY B -25 REMARK 465 LEU B -24 REMARK 465 ASN B -23 REMARK 465 ASP B -22 REMARK 465 ILE B -21 REMARK 465 PHE B -20 REMARK 465 GLU B -19 REMARK 465 ALA B -18 REMARK 465 GLN B -17 REMARK 465 LYS B -16 REMARK 465 ILE B -15 REMARK 465 GLU B -14 REMARK 465 TRP B -13 REMARK 465 HIS B -12 REMARK 465 GLU B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 ASN B 58 REMARK 465 SER B 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -4.68 82.08 REMARK 500 SER A 33 28.85 48.62 REMARK 500 GLU B 1 44.86 -83.95 REMARK 500 ASP B 31 30.15 30.84 REMARK 500 SER B 33 -26.85 101.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 29 LEU A 30 -147.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 5QUA A -1 59 UNP P16333 NCK1_HUMAN 1 61 DBREF 5QUA B -1 59 UNP P16333 NCK1_HUMAN 1 61 SEQADV 5QUA SER A -27 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY A -26 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY A -25 UNP P16333 EXPRESSION TAG SEQADV 5QUA LEU A -24 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASN A -23 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASP A -22 UNP P16333 EXPRESSION TAG SEQADV 5QUA ILE A -21 UNP P16333 EXPRESSION TAG SEQADV 5QUA PHE A -20 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU A -19 UNP P16333 EXPRESSION TAG SEQADV 5QUA ALA A -18 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLN A -17 UNP P16333 EXPRESSION TAG SEQADV 5QUA LYS A -16 UNP P16333 EXPRESSION TAG SEQADV 5QUA ILE A -15 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU A -14 UNP P16333 EXPRESSION TAG SEQADV 5QUA TRP A -13 UNP P16333 EXPRESSION TAG SEQADV 5QUA HIS A -12 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU A -11 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY A -10 UNP P16333 EXPRESSION TAG SEQADV 5QUA SER A -9 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU A -8 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASN A -7 UNP P16333 EXPRESSION TAG SEQADV 5QUA LEU A -6 UNP P16333 EXPRESSION TAG SEQADV 5QUA TYR A -5 UNP P16333 EXPRESSION TAG SEQADV 5QUA PHE A -4 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLN A -3 UNP P16333 EXPRESSION TAG SEQADV 5QUA SER A -2 UNP P16333 EXPRESSION TAG SEQADV 5QUA SER B -27 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY B -26 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY B -25 UNP P16333 EXPRESSION TAG SEQADV 5QUA LEU B -24 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASN B -23 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASP B -22 UNP P16333 EXPRESSION TAG SEQADV 5QUA ILE B -21 UNP P16333 EXPRESSION TAG SEQADV 5QUA PHE B -20 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU B -19 UNP P16333 EXPRESSION TAG SEQADV 5QUA ALA B -18 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLN B -17 UNP P16333 EXPRESSION TAG SEQADV 5QUA LYS B -16 UNP P16333 EXPRESSION TAG SEQADV 5QUA ILE B -15 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU B -14 UNP P16333 EXPRESSION TAG SEQADV 5QUA TRP B -13 UNP P16333 EXPRESSION TAG SEQADV 5QUA HIS B -12 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU B -11 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLY B -10 UNP P16333 EXPRESSION TAG SEQADV 5QUA SER B -9 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLU B -8 UNP P16333 EXPRESSION TAG SEQADV 5QUA ASN B -7 UNP P16333 EXPRESSION TAG SEQADV 5QUA LEU B -6 UNP P16333 EXPRESSION TAG SEQADV 5QUA TYR B -5 UNP P16333 EXPRESSION TAG SEQADV 5QUA PHE B -4 UNP P16333 EXPRESSION TAG SEQADV 5QUA GLN B -3 UNP P16333 EXPRESSION TAG SEQADV 5QUA SER B -2 UNP P16333 EXPRESSION TAG SEQRES 1 A 87 SER GLY GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE SEQRES 2 A 87 GLU TRP HIS GLU GLY SER GLU ASN LEU TYR PHE GLN SER SEQRES 3 A 87 MET ALA GLU GLU VAL VAL VAL VAL ALA LYS PHE ASP TYR SEQRES 4 A 87 VAL ALA GLN GLN GLU GLN GLU LEU ASP ILE LYS LYS ASN SEQRES 5 A 87 GLU ARG LEU TRP LEU LEU ASP ASP SER LYS SER TRP TRP SEQRES 6 A 87 ARG VAL ARG ASN SER MET ASN LYS THR GLY PHE VAL PRO SEQRES 7 A 87 SER ASN TYR VAL GLU ARG LYS ASN SER SEQRES 1 B 87 SER GLY GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE SEQRES 2 B 87 GLU TRP HIS GLU GLY SER GLU ASN LEU TYR PHE GLN SER SEQRES 3 B 87 MET ALA GLU GLU VAL VAL VAL VAL ALA LYS PHE ASP TYR SEQRES 4 B 87 VAL ALA GLN GLN GLU GLN GLU LEU ASP ILE LYS LYS ASN SEQRES 5 B 87 GLU ARG LEU TRP LEU LEU ASP ASP SER LYS SER TRP TRP SEQRES 6 B 87 ARG VAL ARG ASN SER MET ASN LYS THR GLY PHE VAL PRO SEQRES 7 B 87 SER ASN TYR VAL GLU ARG LYS ASN SER FORMUL 3 HOH *61(H2 O) SHEET 1 AA1 5 THR B 46 PRO B 50 0 SHEET 2 AA1 5 TRP B 36 ARG B 40 -1 N TRP B 37 O VAL B 49 SHEET 3 AA1 5 ARG A 26 LEU A 29 -1 N TRP A 28 O ARG B 40 SHEET 4 AA1 5 VAL A 4 ALA A 7 -1 N VAL A 5 O LEU A 27 SHEET 5 AA1 5 VAL B 54 GLU B 55 -1 O GLU B 55 N VAL A 6 SHEET 1 AA2 5 THR A 46 PRO A 50 0 SHEET 2 AA2 5 TRP A 36 ARG A 40 -1 N VAL A 39 O GLY A 47 SHEET 3 AA2 5 ARG B 26 LEU B 29 -1 O TRP B 28 N ARG A 40 SHEET 4 AA2 5 VAL B 3 ALA B 7 -1 N VAL B 5 O LEU B 27 SHEET 5 AA2 5 VAL A 54 GLU A 55 -1 N GLU A 55 O VAL B 6 CRYST1 53.600 85.190 56.190 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017797 0.00000