data_5RL1 # _entry.id 5RL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.344 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5RL1 WWPDB D_1001403351 # _pdbx_database_status.entry_id 5RL1 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2020-08-05 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fearon, D.' 1 ? 'Owen, C.D.' 2 ? 'Douangamath, A.' 3 ? 'Lukacik, P.' 4 ? 'Powell, A.J.' 5 ? 'Strain-Damerell, C.M.' 6 ? 'Zaidman, D.' 7 ? 'Krojer, T.' 8 ? 'Gehrtz, P.' 9 ? 'Wild, C.' 10 ? 'Aimon, A.' 11 ? 'Brandao-Neto, J.' 12 ? 'Carbery, A.' 13 ? 'Dunnett, L.' 14 ? 'Gorrie-Stone, T.J.' 15 ? 'Skyner, R.' 16 ? 'London, N.' 17 ? 'Walsh, M.A.' 18 ? 'von Delft, F.' 19 ? # _citation.id primary _citation.title 'PanDDA analysis group deposition of computational designs of SARS-CoV-2 main protease covalent inhibitors' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Fearon, D.' ? 1 primary 'Owen, C.D.' ? 2 primary 'Douangamath, A.' ? 3 primary 'Lukacik, P.' ? 4 primary 'Powell, A.J.' ? 5 primary 'Strain-Damerell, C.M.' ? 6 primary 'Zaidman, D.' ? 7 primary 'Krojer, T.' ? 8 primary 'Gehrtz, P.' ? 9 primary 'Wild, C.' ? 10 primary 'Aimon, A.' ? 11 primary 'Brandao-Neto, J.' ? 12 primary 'Carbery, A.' ? 13 primary 'Dunnett, L.' ? 14 primary 'Gorrie-Stone, T.J.' ? 15 primary 'Skyner, R.' ? 16 primary 'London, N.' ? 17 primary 'Walsh, M.A.' ? 18 primary 'von Delft, F.' ? 19 # _cell.entry_id 5RL1 _cell.length_a 112.369 _cell.length_b 52.693 _cell.length_c 44.357 _cell.angle_alpha 90.000 _cell.angle_beta 102.870 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RL1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3C-like proteinase' 33825.547 1 3.4.22.69 ? ? ? 2 non-polymer syn 'N-(4-tert-butylphenyl)-N-[(1R)-2-[(3-methoxypropyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide' 411.537 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 4 ? ? ? ? 4 water nat water 18.015 261 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 PHE n 1 4 ARG n 1 5 LYS n 1 6 MET n 1 7 ALA n 1 8 PHE n 1 9 PRO n 1 10 SER n 1 11 GLY n 1 12 LYS n 1 13 VAL n 1 14 GLU n 1 15 GLY n 1 16 CYS n 1 17 MET n 1 18 VAL n 1 19 GLN n 1 20 VAL n 1 21 THR n 1 22 CYS n 1 23 GLY n 1 24 THR n 1 25 THR n 1 26 THR n 1 27 LEU n 1 28 ASN n 1 29 GLY n 1 30 LEU n 1 31 TRP n 1 32 LEU n 1 33 ASP n 1 34 ASP n 1 35 VAL n 1 36 VAL n 1 37 TYR n 1 38 CYS n 1 39 PRO n 1 40 ARG n 1 41 HIS n 1 42 VAL n 1 43 ILE n 1 44 CYS n 1 45 THR n 1 46 SER n 1 47 GLU n 1 48 ASP n 1 49 MET n 1 50 LEU n 1 51 ASN n 1 52 PRO n 1 53 ASN n 1 54 TYR n 1 55 GLU n 1 56 ASP n 1 57 LEU n 1 58 LEU n 1 59 ILE n 1 60 ARG n 1 61 LYS n 1 62 SER n 1 63 ASN n 1 64 HIS n 1 65 ASN n 1 66 PHE n 1 67 LEU n 1 68 VAL n 1 69 GLN n 1 70 ALA n 1 71 GLY n 1 72 ASN n 1 73 VAL n 1 74 GLN n 1 75 LEU n 1 76 ARG n 1 77 VAL n 1 78 ILE n 1 79 GLY n 1 80 HIS n 1 81 SER n 1 82 MET n 1 83 GLN n 1 84 ASN n 1 85 CYS n 1 86 VAL n 1 87 LEU n 1 88 LYS n 1 89 LEU n 1 90 LYS n 1 91 VAL n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 ASN n 1 96 PRO n 1 97 LYS n 1 98 THR n 1 99 PRO n 1 100 LYS n 1 101 TYR n 1 102 LYS n 1 103 PHE n 1 104 VAL n 1 105 ARG n 1 106 ILE n 1 107 GLN n 1 108 PRO n 1 109 GLY n 1 110 GLN n 1 111 THR n 1 112 PHE n 1 113 SER n 1 114 VAL n 1 115 LEU n 1 116 ALA n 1 117 CYS n 1 118 TYR n 1 119 ASN n 1 120 GLY n 1 121 SER n 1 122 PRO n 1 123 SER n 1 124 GLY n 1 125 VAL n 1 126 TYR n 1 127 GLN n 1 128 CYS n 1 129 ALA n 1 130 MET n 1 131 ARG n 1 132 PRO n 1 133 ASN n 1 134 PHE n 1 135 THR n 1 136 ILE n 1 137 LYS n 1 138 GLY n 1 139 SER n 1 140 PHE n 1 141 LEU n 1 142 ASN n 1 143 GLY n 1 144 SER n 1 145 CYS n 1 146 GLY n 1 147 SER n 1 148 VAL n 1 149 GLY n 1 150 PHE n 1 151 ASN n 1 152 ILE n 1 153 ASP n 1 154 TYR n 1 155 ASP n 1 156 CYS n 1 157 VAL n 1 158 SER n 1 159 PHE n 1 160 CYS n 1 161 TYR n 1 162 MET n 1 163 HIS n 1 164 HIS n 1 165 MET n 1 166 GLU n 1 167 LEU n 1 168 PRO n 1 169 THR n 1 170 GLY n 1 171 VAL n 1 172 HIS n 1 173 ALA n 1 174 GLY n 1 175 THR n 1 176 ASP n 1 177 LEU n 1 178 GLU n 1 179 GLY n 1 180 ASN n 1 181 PHE n 1 182 TYR n 1 183 GLY n 1 184 PRO n 1 185 PHE n 1 186 VAL n 1 187 ASP n 1 188 ARG n 1 189 GLN n 1 190 THR n 1 191 ALA n 1 192 GLN n 1 193 ALA n 1 194 ALA n 1 195 GLY n 1 196 THR n 1 197 ASP n 1 198 THR n 1 199 THR n 1 200 ILE n 1 201 THR n 1 202 VAL n 1 203 ASN n 1 204 VAL n 1 205 LEU n 1 206 ALA n 1 207 TRP n 1 208 LEU n 1 209 TYR n 1 210 ALA n 1 211 ALA n 1 212 VAL n 1 213 ILE n 1 214 ASN n 1 215 GLY n 1 216 ASP n 1 217 ARG n 1 218 TRP n 1 219 PHE n 1 220 LEU n 1 221 ASN n 1 222 ARG n 1 223 PHE n 1 224 THR n 1 225 THR n 1 226 THR n 1 227 LEU n 1 228 ASN n 1 229 ASP n 1 230 PHE n 1 231 ASN n 1 232 LEU n 1 233 VAL n 1 234 ALA n 1 235 MET n 1 236 LYS n 1 237 TYR n 1 238 ASN n 1 239 TYR n 1 240 GLU n 1 241 PRO n 1 242 LEU n 1 243 THR n 1 244 GLN n 1 245 ASP n 1 246 HIS n 1 247 VAL n 1 248 ASP n 1 249 ILE n 1 250 LEU n 1 251 GLY n 1 252 PRO n 1 253 LEU n 1 254 SER n 1 255 ALA n 1 256 GLN n 1 257 THR n 1 258 GLY n 1 259 ILE n 1 260 ALA n 1 261 VAL n 1 262 LEU n 1 263 ASP n 1 264 MET n 1 265 CYS n 1 266 ALA n 1 267 SER n 1 268 LEU n 1 269 LYS n 1 270 GLU n 1 271 LEU n 1 272 LEU n 1 273 GLN n 1 274 ASN n 1 275 GLY n 1 276 MET n 1 277 ASN n 1 278 GLY n 1 279 ARG n 1 280 THR n 1 281 ILE n 1 282 LEU n 1 283 GLY n 1 284 SER n 1 285 ALA n 1 286 LEU n 1 287 LEU n 1 288 GLU n 1 289 ASP n 1 290 GLU n 1 291 PHE n 1 292 THR n 1 293 PRO n 1 294 PHE n 1 295 ASP n 1 296 VAL n 1 297 VAL n 1 298 ARG n 1 299 GLN n 1 300 CYS n 1 301 SER n 1 302 GLY n 1 303 VAL n 1 304 THR n 1 305 PHE n 1 306 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 306 _entity_src_gen.gene_src_common_name 2019-nCoV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _struct_ref.pdbx_align_begin 3264 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5RL1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 306 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTD1 _struct_ref_seq.db_align_beg 3264 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3569 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 306 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VEJ non-polymer . 'N-(4-tert-butylphenyl)-N-[(1R)-2-[(3-methoxypropyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide' ? 'C24 H33 N3 O3' 411.537 # _exptl.crystals_number 1 _exptl.entry_id 5RL1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 35.00 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.pdbx_details '15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2020-05-14 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9126 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.9126 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5RL1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 54.750 _reflns.d_resolution_high 1.650 _reflns.number_obs 30130 _reflns.number_all ? _reflns.percent_possible_obs 98.800 _reflns.pdbx_Rmerge_I_obs 0.117 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.100 _reflns.B_iso_Wilson_estimate 24.510 _reflns.pdbx_redundancy 3.400 _reflns.pdbx_Rrim_I_all 0.138 _reflns.pdbx_Rpim_I_all 0.073 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 102769 _reflns.pdbx_scaling_rejects 152 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.650 1.680 ? 4120 ? ? 1.545 ? ? ? 2.800 ? 0.600 ? 1460 ? ? ? ? 96.900 1.906 1.093 0.349 1 2 9.030 54.750 ? 778 ? ? 0.024 ? ? ? 3.800 ? 29.200 ? 203 ? ? ? ? 99.700 0.028 0.014 0.999 # _refine.entry_id 5RL1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.6500 _refine.ls_d_res_low 54.7700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.0000 _refine.ls_number_reflns_obs 29931 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1833 _refine.ls_R_factor_R_work 0.1819 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2103 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9100 _refine.ls_number_reflns_R_free 1469 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.6500 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -9.8289 _refine.aniso_B[2][2] 7.2740 _refine.aniso_B[3][3] 2.5549 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.1179 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9490 _refine.correlation_coeff_Fo_to_Fc_free 0.9380 _refine.overall_SU_R_Cruickshank_DPI 0.1120 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1040 _refine.pdbx_overall_SU_R_Blow_DPI 0.1180 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1070 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 6LU7 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 74.360 _refine.B_iso_min 14.740 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 5RL1 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.280 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6500 _refine_hist.d_res_low 54.7700 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 261 _refine_hist.number_atoms_total 2654 _refine_hist.pdbx_number_residues_total 304 _refine_hist.pdbx_B_iso_mean_ligand 39.14 _refine_hist.pdbx_B_iso_mean_solvent 39.78 _refine_hist.pdbx_number_atoms_protein 2347 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 832 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? ? ? ? 'X-RAY DIFFRACTION' t_gen_planes 434 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2458 ? ? 10.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 315 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2596 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2458 0.008 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 3340 0.990 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.720 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 15.610 ? ? ? # _refine_ls_shell.d_res_high 1.6500 _refine_ls_shell.d_res_low 1.6600 _refine_ls_shell.pdbx_total_number_of_bins_used 51 _refine_ls_shell.percent_reflns_obs 87.4100 _refine_ls_shell.number_reflns_R_work 575 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2598 _refine_ls_shell.R_factor_R_free 0.2893 _refine_ls_shell.percent_reflns_R_free 4.0100 _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 599 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5RL1 _struct.title ;PanDDA analysis group deposition of computational designs of SARS-CoV-2 main protease covalent inhibitors -- Crystal Structure of SARS-CoV-2 main protease in complex with LON-WEI-adc59df6-27 (Mpro-x3113) ; _struct.pdbx_descriptor '3C-like proteinase (E.C.3.4.22.69)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5RL1 _struct_keywords.text 'SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, HYDROLASE-HYDROLASE inhibitor complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 10 ? GLY A 15 ? SER A 10 GLY A 15 1 ? 6 HELX_P HELX_P2 AA2 HIS A 41 ? CYS A 44 ? HIS A 41 CYS A 44 5 ? 4 HELX_P HELX_P3 AA3 GLU A 47 ? ASN A 51 ? GLU A 47 ASN A 51 5 ? 5 HELX_P HELX_P4 AA4 ASN A 53 ? ARG A 60 ? ASN A 53 ARG A 60 1 ? 8 HELX_P HELX_P5 AA5 LYS A 61 ? HIS A 64 ? LYS A 61 HIS A 64 5 ? 4 HELX_P HELX_P6 AA6 ILE A 200 ? ASN A 214 ? ILE A 200 ASN A 214 1 ? 15 HELX_P HELX_P7 AA7 THR A 226 ? TYR A 237 ? THR A 226 TYR A 237 1 ? 12 HELX_P HELX_P8 AA8 THR A 243 ? GLY A 258 ? THR A 243 GLY A 258 1 ? 16 HELX_P HELX_P9 AA9 ALA A 260 ? GLY A 275 ? ALA A 260 GLY A 275 1 ? 16 HELX_P HELX_P10 AB1 THR A 292 ? GLY A 302 ? THR A 292 GLY A 302 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id VEJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id VEJ _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.820 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 73 ? LEU A 75 ? VAL A 73 LEU A 75 AA1 2 PHE A 66 ? ALA A 70 ? PHE A 66 ALA A 70 AA1 3 MET A 17 ? CYS A 22 ? MET A 17 CYS A 22 AA1 4 THR A 25 ? LEU A 32 ? THR A 25 LEU A 32 AA1 5 VAL A 35 ? PRO A 39 ? VAL A 35 PRO A 39 AA1 6 VAL A 86 ? VAL A 91 ? VAL A 86 VAL A 91 AA1 7 VAL A 77 ? GLN A 83 ? VAL A 77 GLN A 83 AA2 1 LYS A 100 ? PHE A 103 ? LYS A 100 PHE A 103 AA2 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166 AA2 3 VAL A 148 ? ASP A 153 ? VAL A 148 ASP A 153 AA2 4 THR A 111 ? TYR A 118 ? THR A 111 TYR A 118 AA2 5 SER A 121 ? ALA A 129 ? SER A 121 ALA A 129 AA3 1 LYS A 100 ? PHE A 103 ? LYS A 100 PHE A 103 AA3 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166 AA3 3 HIS A 172 ? THR A 175 ? HIS A 172 THR A 175 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 75 ? O LEU A 75 N VAL A 68 ? N VAL A 68 AA1 2 3 O LEU A 67 ? O LEU A 67 N THR A 21 ? N THR A 21 AA1 3 4 N VAL A 20 ? N VAL A 20 O LEU A 27 ? O LEU A 27 AA1 4 5 N LEU A 30 ? N LEU A 30 O TYR A 37 ? O TYR A 37 AA1 5 6 N VAL A 36 ? N VAL A 36 O LEU A 89 ? O LEU A 89 AA1 6 7 O LYS A 88 ? O LYS A 88 N SER A 81 ? N SER A 81 AA2 1 2 N LYS A 100 ? N LYS A 100 O VAL A 157 ? O VAL A 157 AA2 2 3 O SER A 158 ? O SER A 158 N ASN A 151 ? N ASN A 151 AA2 3 4 O PHE A 150 ? O PHE A 150 N SER A 113 ? N SER A 113 AA2 4 5 N ALA A 116 ? N ALA A 116 O SER A 123 ? O SER A 123 AA3 1 2 N LYS A 100 ? N LYS A 100 O VAL A 157 ? O VAL A 157 AA3 2 3 N MET A 165 ? N MET A 165 O ALA A 173 ? O ALA A 173 # _atom_sites.entry_id 5RL1 _atom_sites.fract_transf_matrix[1][1] 0.008899 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002033 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018978 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023125 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 CYS 128 128 128 CYS CYS A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 CYS 145 145 145 CYS CYS A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 CYS 156 156 156 CYS CYS A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 HIS 163 163 163 HIS HIS A . n A 1 164 HIS 164 164 164 HIS HIS A . n A 1 165 MET 165 165 165 MET MET A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 HIS 172 172 172 HIS HIS A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ASN 214 214 214 ASN ASN A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 TRP 218 218 218 TRP TRP A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 ARG 222 222 222 ARG ARG A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 THR 224 224 224 THR THR A . n A 1 225 THR 225 225 225 THR THR A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 MET 235 235 235 MET MET A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 TYR 237 237 237 TYR TYR A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 TYR 239 239 239 TYR TYR A . n A 1 240 GLU 240 240 240 GLU GLU A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 ASP 245 245 245 ASP ASP A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 GLY 251 251 251 GLY GLY A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 SER 254 254 254 SER SER A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 GLN 256 256 256 GLN GLN A . n A 1 257 THR 257 257 257 THR THR A . n A 1 258 GLY 258 258 258 GLY GLY A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 MET 264 264 264 MET MET A . n A 1 265 CYS 265 265 265 CYS CYS A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 ASN 274 274 274 ASN ASN A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 MET 276 276 276 MET MET A . n A 1 277 ASN 277 277 277 ASN ASN A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 THR 280 280 280 THR THR A . n A 1 281 ILE 281 281 281 ILE ILE A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 GLY 283 283 283 GLY GLY A . n A 1 284 SER 284 284 284 SER SER A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 LEU 287 287 287 LEU LEU A . n A 1 288 GLU 288 288 288 GLU GLU A . n A 1 289 ASP 289 289 289 ASP ASP A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 PHE 291 291 291 PHE PHE A . n A 1 292 THR 292 292 292 THR THR A . n A 1 293 PRO 293 293 293 PRO PRO A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 ASP 295 295 295 ASP ASP A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLN 299 299 299 GLN GLN A . n A 1 300 CYS 300 300 300 CYS CYS A . n A 1 301 SER 301 301 301 SER SER A . n A 1 302 GLY 302 302 302 GLY GLY A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 THR 304 304 304 THR THR A . n A 1 305 PHE 305 305 ? ? ? A . n A 1 306 GLN 306 306 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VEJ 1 1001 1001 VEJ LIG A . C 3 DMS 1 1002 1002 DMS DMS A . D 3 DMS 1 1003 1003 DMS DMS A . E 3 DMS 1 1004 1004 DMS DMS A . F 3 DMS 1 1005 1006 DMS DMS A . G 4 HOH 1 1101 194 HOH HOH A . G 4 HOH 2 1102 243 HOH HOH A . G 4 HOH 3 1103 87 HOH HOH A . G 4 HOH 4 1104 63 HOH HOH A . G 4 HOH 5 1105 200 HOH HOH A . G 4 HOH 6 1106 223 HOH HOH A . G 4 HOH 7 1107 246 HOH HOH A . G 4 HOH 8 1108 71 HOH HOH A . G 4 HOH 9 1109 93 HOH HOH A . G 4 HOH 10 1110 101 HOH HOH A . G 4 HOH 11 1111 1 HOH HOH A . G 4 HOH 12 1112 34 HOH HOH A . G 4 HOH 13 1113 216 HOH HOH A . G 4 HOH 14 1114 89 HOH HOH A . G 4 HOH 15 1115 97 HOH HOH A . G 4 HOH 16 1116 202 HOH HOH A . G 4 HOH 17 1117 259 HOH HOH A . G 4 HOH 18 1118 10 HOH HOH A . G 4 HOH 19 1119 232 HOH HOH A . G 4 HOH 20 1120 133 HOH HOH A . G 4 HOH 21 1121 122 HOH HOH A . G 4 HOH 22 1122 60 HOH HOH A . G 4 HOH 23 1123 33 HOH HOH A . G 4 HOH 24 1124 51 HOH HOH A . G 4 HOH 25 1125 41 HOH HOH A . G 4 HOH 26 1126 92 HOH HOH A . G 4 HOH 27 1127 237 HOH HOH A . G 4 HOH 28 1128 98 HOH HOH A . G 4 HOH 29 1129 129 HOH HOH A . G 4 HOH 30 1130 161 HOH HOH A . G 4 HOH 31 1131 9 HOH HOH A . G 4 HOH 32 1132 170 HOH HOH A . G 4 HOH 33 1133 50 HOH HOH A . G 4 HOH 34 1134 240 HOH HOH A . G 4 HOH 35 1135 37 HOH HOH A . G 4 HOH 36 1136 72 HOH HOH A . G 4 HOH 37 1137 254 HOH HOH A . G 4 HOH 38 1138 75 HOH HOH A . G 4 HOH 39 1139 29 HOH HOH A . G 4 HOH 40 1140 4 HOH HOH A . G 4 HOH 41 1141 210 HOH HOH A . G 4 HOH 42 1142 127 HOH HOH A . G 4 HOH 43 1143 242 HOH HOH A . G 4 HOH 44 1144 82 HOH HOH A . G 4 HOH 45 1145 35 HOH HOH A . G 4 HOH 46 1146 45 HOH HOH A . G 4 HOH 47 1147 68 HOH HOH A . G 4 HOH 48 1148 55 HOH HOH A . G 4 HOH 49 1149 7 HOH HOH A . G 4 HOH 50 1150 158 HOH HOH A . G 4 HOH 51 1151 249 HOH HOH A . G 4 HOH 52 1152 235 HOH HOH A . G 4 HOH 53 1153 261 HOH HOH A . G 4 HOH 54 1154 59 HOH HOH A . G 4 HOH 55 1155 52 HOH HOH A . G 4 HOH 56 1156 217 HOH HOH A . G 4 HOH 57 1157 108 HOH HOH A . G 4 HOH 58 1158 53 HOH HOH A . G 4 HOH 59 1159 140 HOH HOH A . G 4 HOH 60 1160 21 HOH HOH A . G 4 HOH 61 1161 40 HOH HOH A . G 4 HOH 62 1162 39 HOH HOH A . G 4 HOH 63 1163 26 HOH HOH A . G 4 HOH 64 1164 42 HOH HOH A . G 4 HOH 65 1165 28 HOH HOH A . G 4 HOH 66 1166 80 HOH HOH A . G 4 HOH 67 1167 253 HOH HOH A . G 4 HOH 68 1168 57 HOH HOH A . G 4 HOH 69 1169 166 HOH HOH A . G 4 HOH 70 1170 3 HOH HOH A . G 4 HOH 71 1171 116 HOH HOH A . G 4 HOH 72 1172 241 HOH HOH A . G 4 HOH 73 1173 126 HOH HOH A . G 4 HOH 74 1174 62 HOH HOH A . G 4 HOH 75 1175 248 HOH HOH A . G 4 HOH 76 1176 20 HOH HOH A . G 4 HOH 77 1177 100 HOH HOH A . G 4 HOH 78 1178 155 HOH HOH A . G 4 HOH 79 1179 76 HOH HOH A . G 4 HOH 80 1180 159 HOH HOH A . G 4 HOH 81 1181 79 HOH HOH A . G 4 HOH 82 1182 6 HOH HOH A . G 4 HOH 83 1183 128 HOH HOH A . G 4 HOH 84 1184 164 HOH HOH A . G 4 HOH 85 1185 130 HOH HOH A . G 4 HOH 86 1186 5 HOH HOH A . G 4 HOH 87 1187 17 HOH HOH A . G 4 HOH 88 1188 199 HOH HOH A . G 4 HOH 89 1189 66 HOH HOH A . G 4 HOH 90 1190 24 HOH HOH A . G 4 HOH 91 1191 81 HOH HOH A . G 4 HOH 92 1192 15 HOH HOH A . G 4 HOH 93 1193 73 HOH HOH A . G 4 HOH 94 1194 250 HOH HOH A . G 4 HOH 95 1195 121 HOH HOH A . G 4 HOH 96 1196 65 HOH HOH A . G 4 HOH 97 1197 77 HOH HOH A . G 4 HOH 98 1198 12 HOH HOH A . G 4 HOH 99 1199 182 HOH HOH A . G 4 HOH 100 1200 18 HOH HOH A . G 4 HOH 101 1201 110 HOH HOH A . G 4 HOH 102 1202 184 HOH HOH A . G 4 HOH 103 1203 61 HOH HOH A . G 4 HOH 104 1204 157 HOH HOH A . G 4 HOH 105 1205 115 HOH HOH A . G 4 HOH 106 1206 78 HOH HOH A . G 4 HOH 107 1207 14 HOH HOH A . G 4 HOH 108 1208 19 HOH HOH A . G 4 HOH 109 1209 27 HOH HOH A . G 4 HOH 110 1210 214 HOH HOH A . G 4 HOH 111 1211 151 HOH HOH A . G 4 HOH 112 1212 222 HOH HOH A . G 4 HOH 113 1213 244 HOH HOH A . G 4 HOH 114 1214 85 HOH HOH A . G 4 HOH 115 1215 11 HOH HOH A . G 4 HOH 116 1216 205 HOH HOH A . G 4 HOH 117 1217 112 HOH HOH A . G 4 HOH 118 1218 260 HOH HOH A . G 4 HOH 119 1219 256 HOH HOH A . G 4 HOH 120 1220 258 HOH HOH A . G 4 HOH 121 1221 132 HOH HOH A . G 4 HOH 122 1222 177 HOH HOH A . G 4 HOH 123 1223 99 HOH HOH A . G 4 HOH 124 1224 67 HOH HOH A . G 4 HOH 125 1225 30 HOH HOH A . G 4 HOH 126 1226 193 HOH HOH A . G 4 HOH 127 1227 160 HOH HOH A . G 4 HOH 128 1228 32 HOH HOH A . G 4 HOH 129 1229 196 HOH HOH A . G 4 HOH 130 1230 58 HOH HOH A . G 4 HOH 131 1231 179 HOH HOH A . G 4 HOH 132 1232 168 HOH HOH A . G 4 HOH 133 1233 255 HOH HOH A . G 4 HOH 134 1234 54 HOH HOH A . G 4 HOH 135 1235 2 HOH HOH A . G 4 HOH 136 1236 95 HOH HOH A . G 4 HOH 137 1237 111 HOH HOH A . G 4 HOH 138 1238 8 HOH HOH A . G 4 HOH 139 1239 22 HOH HOH A . G 4 HOH 140 1240 146 HOH HOH A . G 4 HOH 141 1241 25 HOH HOH A . G 4 HOH 142 1242 201 HOH HOH A . G 4 HOH 143 1243 13 HOH HOH A . G 4 HOH 144 1244 91 HOH HOH A . G 4 HOH 145 1245 36 HOH HOH A . G 4 HOH 146 1246 181 HOH HOH A . G 4 HOH 147 1247 56 HOH HOH A . G 4 HOH 148 1248 234 HOH HOH A . G 4 HOH 149 1249 215 HOH HOH A . G 4 HOH 150 1250 44 HOH HOH A . G 4 HOH 151 1251 152 HOH HOH A . G 4 HOH 152 1252 252 HOH HOH A . G 4 HOH 153 1253 134 HOH HOH A . G 4 HOH 154 1254 64 HOH HOH A . G 4 HOH 155 1255 90 HOH HOH A . G 4 HOH 156 1256 136 HOH HOH A . G 4 HOH 157 1257 226 HOH HOH A . G 4 HOH 158 1258 23 HOH HOH A . G 4 HOH 159 1259 49 HOH HOH A . G 4 HOH 160 1260 144 HOH HOH A . G 4 HOH 161 1261 86 HOH HOH A . G 4 HOH 162 1262 247 HOH HOH A . G 4 HOH 163 1263 142 HOH HOH A . G 4 HOH 164 1264 183 HOH HOH A . G 4 HOH 165 1265 169 HOH HOH A . G 4 HOH 166 1266 124 HOH HOH A . G 4 HOH 167 1267 236 HOH HOH A . G 4 HOH 168 1268 74 HOH HOH A . G 4 HOH 169 1269 70 HOH HOH A . G 4 HOH 170 1270 209 HOH HOH A . G 4 HOH 171 1271 119 HOH HOH A . G 4 HOH 172 1272 187 HOH HOH A . G 4 HOH 173 1273 139 HOH HOH A . G 4 HOH 174 1274 48 HOH HOH A . G 4 HOH 175 1275 105 HOH HOH A . G 4 HOH 176 1276 156 HOH HOH A . G 4 HOH 177 1277 180 HOH HOH A . G 4 HOH 178 1278 163 HOH HOH A . G 4 HOH 179 1279 120 HOH HOH A . G 4 HOH 180 1280 220 HOH HOH A . G 4 HOH 181 1281 125 HOH HOH A . G 4 HOH 182 1282 251 HOH HOH A . G 4 HOH 183 1283 16 HOH HOH A . G 4 HOH 184 1284 143 HOH HOH A . G 4 HOH 185 1285 107 HOH HOH A . G 4 HOH 186 1286 103 HOH HOH A . G 4 HOH 187 1287 84 HOH HOH A . G 4 HOH 188 1288 43 HOH HOH A . G 4 HOH 189 1289 171 HOH HOH A . G 4 HOH 190 1290 117 HOH HOH A . G 4 HOH 191 1291 106 HOH HOH A . G 4 HOH 192 1292 188 HOH HOH A . G 4 HOH 193 1293 218 HOH HOH A . G 4 HOH 194 1294 219 HOH HOH A . G 4 HOH 195 1295 198 HOH HOH A . G 4 HOH 196 1296 206 HOH HOH A . G 4 HOH 197 1297 31 HOH HOH A . G 4 HOH 198 1298 189 HOH HOH A . G 4 HOH 199 1299 230 HOH HOH A . G 4 HOH 200 1300 113 HOH HOH A . G 4 HOH 201 1301 233 HOH HOH A . G 4 HOH 202 1302 185 HOH HOH A . G 4 HOH 203 1303 47 HOH HOH A . G 4 HOH 204 1304 96 HOH HOH A . G 4 HOH 205 1305 141 HOH HOH A . G 4 HOH 206 1306 109 HOH HOH A . G 4 HOH 207 1307 208 HOH HOH A . G 4 HOH 208 1308 135 HOH HOH A . G 4 HOH 209 1309 138 HOH HOH A . G 4 HOH 210 1310 167 HOH HOH A . G 4 HOH 211 1311 153 HOH HOH A . G 4 HOH 212 1312 257 HOH HOH A . G 4 HOH 213 1313 238 HOH HOH A . G 4 HOH 214 1314 225 HOH HOH A . G 4 HOH 215 1315 172 HOH HOH A . G 4 HOH 216 1316 190 HOH HOH A . G 4 HOH 217 1317 174 HOH HOH A . G 4 HOH 218 1318 239 HOH HOH A . G 4 HOH 219 1319 245 HOH HOH A . G 4 HOH 220 1320 178 HOH HOH A . G 4 HOH 221 1321 69 HOH HOH A . G 4 HOH 222 1322 147 HOH HOH A . G 4 HOH 223 1323 231 HOH HOH A . G 4 HOH 224 1324 212 HOH HOH A . G 4 HOH 225 1325 94 HOH HOH A . G 4 HOH 226 1326 137 HOH HOH A . G 4 HOH 227 1327 176 HOH HOH A . G 4 HOH 228 1328 197 HOH HOH A . G 4 HOH 229 1329 211 HOH HOH A . G 4 HOH 230 1330 154 HOH HOH A . G 4 HOH 231 1331 227 HOH HOH A . G 4 HOH 232 1332 204 HOH HOH A . G 4 HOH 233 1333 118 HOH HOH A . G 4 HOH 234 1334 131 HOH HOH A . G 4 HOH 235 1335 102 HOH HOH A . G 4 HOH 236 1336 213 HOH HOH A . G 4 HOH 237 1337 203 HOH HOH A . G 4 HOH 238 1338 229 HOH HOH A . G 4 HOH 239 1339 149 HOH HOH A . G 4 HOH 240 1340 150 HOH HOH A . G 4 HOH 241 1341 46 HOH HOH A . G 4 HOH 242 1342 221 HOH HOH A . G 4 HOH 243 1343 195 HOH HOH A . G 4 HOH 244 1344 191 HOH HOH A . G 4 HOH 245 1345 114 HOH HOH A . G 4 HOH 246 1346 83 HOH HOH A . G 4 HOH 247 1347 175 HOH HOH A . G 4 HOH 248 1348 145 HOH HOH A . G 4 HOH 249 1349 224 HOH HOH A . G 4 HOH 250 1350 104 HOH HOH A . G 4 HOH 251 1351 38 HOH HOH A . G 4 HOH 252 1352 123 HOH HOH A . G 4 HOH 253 1353 165 HOH HOH A . G 4 HOH 254 1354 173 HOH HOH A . G 4 HOH 255 1355 192 HOH HOH A . G 4 HOH 256 1356 162 HOH HOH A . G 4 HOH 257 1357 88 HOH HOH A . G 4 HOH 258 1358 207 HOH HOH A . G 4 HOH 259 1359 228 HOH HOH A . G 4 HOH 260 1360 186 HOH HOH A . G 4 HOH 261 1361 148 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4510 ? 1 MORE 0 ? 1 'SSA (A^2)' 25080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-02 2 'Structure model' 1 1 2021-07-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation_author.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.8600 _pdbx_refine_tls.origin_y 0.6092 _pdbx_refine_tls.origin_z 5.0215 _pdbx_refine_tls.T[1][1] 0.0150 _pdbx_refine_tls.T[2][2] -0.0320 _pdbx_refine_tls.T[3][3] -0.0062 _pdbx_refine_tls.T[1][2] -0.0061 _pdbx_refine_tls.T[1][3] -0.0570 _pdbx_refine_tls.T[2][3] 0.0025 _pdbx_refine_tls.L[1][1] -0.0308 _pdbx_refine_tls.L[2][2] 0.5583 _pdbx_refine_tls.L[3][3] 0.4150 _pdbx_refine_tls.L[1][2] -0.0096 _pdbx_refine_tls.L[1][3] 0.0200 _pdbx_refine_tls.L[2][3] -0.4078 _pdbx_refine_tls.S[1][1] -0.0073 _pdbx_refine_tls.S[2][2] 0.0149 _pdbx_refine_tls.S[3][3] -0.0076 _pdbx_refine_tls.S[1][2] 0.0052 _pdbx_refine_tls.S[1][3] -0.0160 _pdbx_refine_tls.S[2][3] -0.0073 _pdbx_refine_tls.S[2][1] 0.0108 _pdbx_refine_tls.S[3][1] -0.0201 _pdbx_refine_tls.S[3][2] 0.0004 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 304 _pdbx_refine_tls_group.selection_details '{ A|* }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER '2.10.3 (20-MAY-2020)' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 Aimless 0.7.4 13/12/18 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 5RL1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? 58.93 -132.58 2 1 SER A 46 ? ? -65.09 98.78 3 1 GLU A 47 ? ? 121.33 -31.86 4 1 ASN A 84 ? ? 57.27 -119.76 5 1 TYR A 154 ? ? 58.37 -85.98 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 1361 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.71 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 305 ? A PHE 305 2 1 Y 1 A GLN 306 ? A GLN 306 # _pdbx_deposit_group.group_id G_1002163 _pdbx_deposit_group.group_description ;SARS-CoV-2 main protease from Coronaviridae sp. screened against computationally designed covalent inhibitors by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of computational designs of SARS-CoV-2 main protease covalent inhibitors' _pdbx_deposit_group.group_type 'changed state' # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id VEJ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id VEJ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-(4-tert-butylphenyl)-N-[(1R)-2-[(3-methoxypropyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide' VEJ 3 'DIMETHYL SULFOXIDE' DMS 4 water HOH #