HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SCY TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-1198 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-MAY-24 5SCY 1 REMARK REVDAT 2 02-MAR-22 5SCY 1 KEYWDS REVDAT 1 09-FEB-22 5SCY 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-1198 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2196 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6547 - 3.4516 1.00 1967 137 0.1314 0.1562 REMARK 3 2 3.4516 - 2.7400 1.00 1843 149 0.1358 0.1386 REMARK 3 3 2.7400 - 2.3938 1.00 1827 144 0.1434 0.1890 REMARK 3 4 2.3938 - 2.1750 1.00 1807 141 0.1478 0.1717 REMARK 3 5 2.1750 - 2.0191 1.00 1806 138 0.1378 0.1522 REMARK 3 6 2.0191 - 1.9001 1.00 1795 140 0.1404 0.1626 REMARK 3 7 1.9001 - 1.8049 1.00 1784 148 0.1454 0.1577 REMARK 3 8 1.8049 - 1.7263 1.00 1752 147 0.1529 0.1789 REMARK 3 9 1.7263 - 1.6599 1.00 1802 130 0.1633 0.1933 REMARK 3 10 1.6599 - 1.6026 1.00 1793 135 0.1632 0.1828 REMARK 3 11 1.6026 - 1.5525 1.00 1778 153 0.1788 0.2066 REMARK 3 12 1.5525 - 1.5081 1.00 1785 119 0.1826 0.1967 REMARK 3 13 1.5081 - 1.4684 1.00 1749 146 0.1885 0.2299 REMARK 3 14 1.4684 - 1.4326 0.96 1712 142 0.2031 0.2400 REMARK 3 15 1.4326 - 1.4000 0.93 1602 149 0.2225 0.2352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1476 REMARK 3 ANGLE : 0.918 2020 REMARK 3 CHIRALITY : 0.076 212 REMARK 3 PLANARITY : 0.005 276 REMARK 3 DIHEDRAL : 23.672 575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -8 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3806 13.6837 6.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1000 REMARK 3 T33: 0.0868 T12: 0.0017 REMARK 3 T13: -0.0009 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.7302 L22: 0.9100 REMARK 3 L33: 0.2660 L12: 0.0664 REMARK 3 L13: 0.5020 L23: -0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.1459 S13: 0.1006 REMARK 3 S21: -0.0878 S22: -0.0521 S23: 0.0256 REMARK 3 S31: -0.1851 S32: 0.1597 S33: -0.0147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2065 -0.1958 23.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.0766 REMARK 3 T33: 0.0903 T12: -0.0124 REMARK 3 T13: -0.0095 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.7204 L22: 1.6779 REMARK 3 L33: 3.3462 L12: -0.2718 REMARK 3 L13: 0.3557 L23: -0.5797 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: -0.0885 S13: -0.1411 REMARK 3 S21: 0.0577 S22: -0.0319 S23: 0.0290 REMARK 3 S31: 0.1505 S32: -0.0193 S33: -0.0528 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1337 3.4692 10.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.0929 REMARK 3 T33: 0.0721 T12: -0.0081 REMARK 3 T13: -0.0155 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.2755 L22: 2.1392 REMARK 3 L33: 1.6971 L12: -0.6709 REMARK 3 L13: -0.9704 L23: 0.7733 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.0094 S13: -0.0056 REMARK 3 S21: 0.0153 S22: -0.0220 S23: 0.0406 REMARK 3 S31: -0.0251 S32: -0.1073 S33: -0.0319 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3875 -5.3505 3.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.0950 REMARK 3 T33: 0.0878 T12: -0.0044 REMARK 3 T13: -0.0062 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5846 L22: 2.3519 REMARK 3 L33: 1.7520 L12: -0.5908 REMARK 3 L13: 0.3509 L23: -0.1735 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0867 S13: -0.1184 REMARK 3 S21: -0.0558 S22: -0.0393 S23: 0.0553 REMARK 3 S31: 0.1243 S32: -0.0466 S33: -0.0226 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7464 2.8370 -1.5787 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.1220 REMARK 3 T33: 0.1817 T12: 0.0038 REMARK 3 T13: 0.0197 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0423 L22: 2.3475 REMARK 3 L33: 0.4838 L12: -0.3284 REMARK 3 L13: 0.0118 L23: -0.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.0640 S13: 0.1833 REMARK 3 S21: -0.1921 S22: -0.0408 S23: -0.4170 REMARK 3 S31: -0.1664 S32: -0.0232 S33: -0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7190 8.9313 11.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0766 REMARK 3 T33: 0.0784 T12: -0.0041 REMARK 3 T13: -0.0023 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9076 L22: 1.2921 REMARK 3 L33: 1.0848 L12: -0.1514 REMARK 3 L13: -0.1494 L23: 0.2369 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: 0.0600 S13: 0.0375 REMARK 3 S21: -0.0429 S22: -0.0392 S23: -0.0758 REMARK 3 S31: -0.0438 S32: 0.0445 S33: -0.0448 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5942 0.0060 28.9177 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.1734 REMARK 3 T33: 0.1793 T12: 0.0407 REMARK 3 T13: -0.0383 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.2630 L22: 2.0212 REMARK 3 L33: 1.7130 L12: -2.0576 REMARK 3 L13: -1.7800 L23: 1.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: -0.3358 S13: -0.2025 REMARK 3 S21: 0.3849 S22: 0.1337 S23: -0.0831 REMARK 3 S31: 0.3300 S32: 0.2052 S33: 0.0839 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4081 14.2802 18.0376 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.1343 REMARK 3 T33: 0.1359 T12: -0.0173 REMARK 3 T13: -0.0227 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.2900 L22: 2.1823 REMARK 3 L33: 2.2273 L12: 0.4640 REMARK 3 L13: -1.3807 L23: -0.1810 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: -0.1146 S13: 0.1678 REMARK 3 S21: 0.0800 S22: 0.0243 S23: -0.2667 REMARK 3 S31: -0.1448 S32: 0.1422 S33: -0.1168 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1322 14.1518 23.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.0992 REMARK 3 T33: 0.0865 T12: -0.0222 REMARK 3 T13: -0.0084 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.8143 L22: 0.5390 REMARK 3 L33: 3.5599 L12: 0.8537 REMARK 3 L13: -4.0802 L23: -0.8869 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0442 S13: 0.0577 REMARK 3 S21: -0.0316 S22: 0.0538 S23: -0.0251 REMARK 3 S31: 0.0300 S32: 0.0042 S33: -0.1429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ E1 (284863E1): 1000 MM SODIUM REMARK 280 CITRATE DIBASIC TRIHYDRATE, 100MM SODIUM CACODYLATE, 10MG/ML, REMARK 280 CRYO 20% EG, PUCK GTU5-7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 470 O HOH A 491 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 32.25 -83.26 REMARK 500 LEU A 86 58.54 -96.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SCY A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SCY MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SCY GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCY HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET HEI A 202 30 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HEI 1-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 HEI OXY]PROPOXY}PHENYL)PIPERIDINE-4-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HEI C21 H29 N5 O4 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *211(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 SER A 81 LEU A 86 1 6 HELIX 4 AA4 GLY A 96 LEU A 104 1 9 HELIX 5 AA5 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 -0.42 CISPEP 2 GLY A 95 GLY A 96 0 3.03 CRYST1 29.580 67.290 72.250 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013841 0.00000