data_5SD3 # _entry.id 5SD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SD3 pdb_00005sd3 10.2210/pdb5sd3/pdb WWPDB D_1001404356 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-09 2 'Structure model' 1 1 2022-03-02 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_SG_project 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_keywords 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.SG_entry' 2 2 'Structure model' '_struct_keywords.text' # _pdbx_database_status.entry_id 5SD3 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2021-12-20 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 isabelle.phan@seattlechildrens.org Isabelle Phan ? 'principal investigator/group leader' 0000-0001-6873-3401 3 peter.myler@seattlechildrens.org Peter Myler ? 'principal investigator/group leader' 0000-0002-0056-0513 4 julie.early@seattlechildrens.org Julie Early ? 'principal investigator/group leader' 0000-0003-1224-2747 5 donald.lorimer@ucb.com Don Lorimer ? 'principal investigator/group leader' 0000-0002-9638-8083 6 peter.horanyi@ucb.com Peter Horanyi ? 'principal investigator/group leader' 0000-0003-2218-9986 7 tom.edwards@ucb.com Tom Edwards ? 'principal investigator/group leader' 0000-0002-0474-8003 # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.id primary _citation.journal_abbrev 'to be published' _citation.title 'Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1088' _citation.year ? _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mayclin, S.J.' 1 ? primary 'Fairman, J.W.' 2 ? primary 'Dranow, D.M.' 3 ? primary 'Conrady, D.G.' 4 ? primary 'Fox III, D.' 5 ? primary 'Lukacs, C.M.' 6 ? primary 'Lorimer, D.D.' 7 ? primary 'Horanyi, P.S.' 8 ? primary 'Edwards, T.E.' 9 ? primary 'Abendroth, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 19832.365 1 1.5.1.3 ? MtDHFR ? 2 non-polymer syn 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 743.405 1 ? ? ? ? 3 non-polymer syn '3-{2-[(3-{[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]methyl}oxetan-3-yl)methoxy]phenyl}propanoic acid' 402.444 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 5 water nat water 18.015 212 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGR RNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETG EWRFSRSGLRYRLYSYHRS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGR RNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETG EWRFSRSGLRYRLYSYHRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NAP 3 '3-{2-[(3-{[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]methyl}oxetan-3-yl)methoxy]phenyl}propanoic acid' H9I 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 VAL n 1 23 GLY n 1 24 LEU n 1 25 ILE n 1 26 TRP n 1 27 ALA n 1 28 GLN n 1 29 ALA n 1 30 THR n 1 31 SER n 1 32 GLY n 1 33 VAL n 1 34 ILE n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 GLY n 1 39 ASP n 1 40 ILE n 1 41 PRO n 1 42 TRP n 1 43 ARG n 1 44 LEU n 1 45 PRO n 1 46 GLU n 1 47 ASP n 1 48 GLN n 1 49 ALA n 1 50 HIS n 1 51 PHE n 1 52 ARG n 1 53 GLU n 1 54 ILE n 1 55 THR n 1 56 MET n 1 57 GLY n 1 58 HIS n 1 59 THR n 1 60 ILE n 1 61 VAL n 1 62 MET n 1 63 GLY n 1 64 ARG n 1 65 ARG n 1 66 THR n 1 67 TRP n 1 68 ASP n 1 69 SER n 1 70 LEU n 1 71 PRO n 1 72 ALA n 1 73 LYS n 1 74 VAL n 1 75 ARG n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ARG n 1 81 ARG n 1 82 ASN n 1 83 VAL n 1 84 VAL n 1 85 LEU n 1 86 SER n 1 87 ARG n 1 88 GLN n 1 89 ALA n 1 90 ASP n 1 91 PHE n 1 92 MET n 1 93 ALA n 1 94 SER n 1 95 GLY n 1 96 ALA n 1 97 GLU n 1 98 VAL n 1 99 VAL n 1 100 GLY n 1 101 SER n 1 102 LEU n 1 103 GLU n 1 104 GLU n 1 105 ALA n 1 106 LEU n 1 107 THR n 1 108 SER n 1 109 PRO n 1 110 GLU n 1 111 THR n 1 112 TRP n 1 113 VAL n 1 114 ILE n 1 115 GLY n 1 116 GLY n 1 117 GLY n 1 118 GLN n 1 119 VAL n 1 120 TYR n 1 121 ALA n 1 122 LEU n 1 123 ALA n 1 124 LEU n 1 125 PRO n 1 126 TYR n 1 127 ALA n 1 128 THR n 1 129 ARG n 1 130 CYS n 1 131 GLU n 1 132 VAL n 1 133 THR n 1 134 GLU n 1 135 VAL n 1 136 ASP n 1 137 ILE n 1 138 GLY n 1 139 LEU n 1 140 PRO n 1 141 ARG n 1 142 GLU n 1 143 ALA n 1 144 GLY n 1 145 ASP n 1 146 ALA n 1 147 LEU n 1 148 ALA n 1 149 PRO n 1 150 VAL n 1 151 LEU n 1 152 ASP n 1 153 GLU n 1 154 THR n 1 155 TRP n 1 156 ARG n 1 157 GLY n 1 158 GLU n 1 159 THR n 1 160 GLY n 1 161 GLU n 1 162 TRP n 1 163 ARG n 1 164 PHE n 1 165 SER n 1 166 ARG n 1 167 SER n 1 168 GLY n 1 169 LEU n 1 170 ARG n 1 171 TYR n 1 172 ARG n 1 173 LEU n 1 174 TYR n 1 175 SER n 1 176 TYR n 1 177 HIS n 1 178 ARG n 1 179 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 179 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'folA, dfrA, Rv2763c, MTV002.28c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25618 / H37Rv' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis H37Rv' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 H9I non-polymer . '3-{2-[(3-{[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]methyl}oxetan-3-yl)methoxy]phenyl}propanoic acid' ? 'C20 H26 N4 O5' 402.444 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAP non-polymer . 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ;2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE ; 'C21 H28 N7 O17 P3' 743.405 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 -6 LEU LEU A . n A 1 15 VAL 15 -5 -5 VAL VAL A . n A 1 16 PRO 16 -4 -4 PRO PRO A . n A 1 17 ARG 17 -3 -3 ARG ARG A . n A 1 18 GLY 18 -2 -2 GLY GLY A . n A 1 19 SER 19 -1 -1 SER SER A . n A 1 20 HIS 20 0 0 HIS HIS A . n A 1 21 MET 21 1 1 MET MET A . n A 1 22 VAL 22 2 2 VAL VAL A . n A 1 23 GLY 23 3 3 GLY GLY A . n A 1 24 LEU 24 4 4 LEU LEU A . n A 1 25 ILE 25 5 5 ILE ILE A . n A 1 26 TRP 26 6 6 TRP TRP A . n A 1 27 ALA 27 7 7 ALA ALA A . n A 1 28 GLN 28 8 8 GLN GLN A . n A 1 29 ALA 29 9 9 ALA ALA A . n A 1 30 THR 30 10 10 THR THR A . n A 1 31 SER 31 11 11 SER SER A . n A 1 32 GLY 32 12 12 GLY GLY A . n A 1 33 VAL 33 13 13 VAL VAL A . n A 1 34 ILE 34 14 14 ILE ILE A . n A 1 35 GLY 35 15 15 GLY GLY A . n A 1 36 ARG 36 16 16 ARG ARG A . n A 1 37 GLY 37 17 17 GLY GLY A . n A 1 38 GLY 38 18 18 GLY GLY A . n A 1 39 ASP 39 19 19 ASP ASP A . n A 1 40 ILE 40 20 20 ILE ILE A . n A 1 41 PRO 41 21 21 PRO PRO A . n A 1 42 TRP 42 22 22 TRP TRP A . n A 1 43 ARG 43 23 23 ARG ARG A . n A 1 44 LEU 44 24 24 LEU LEU A . n A 1 45 PRO 45 25 25 PRO PRO A . n A 1 46 GLU 46 26 26 GLU GLU A . n A 1 47 ASP 47 27 27 ASP ASP A . n A 1 48 GLN 48 28 28 GLN GLN A . n A 1 49 ALA 49 29 29 ALA ALA A . n A 1 50 HIS 50 30 30 HIS HIS A . n A 1 51 PHE 51 31 31 PHE PHE A . n A 1 52 ARG 52 32 32 ARG ARG A . n A 1 53 GLU 53 33 33 GLU GLU A . n A 1 54 ILE 54 34 34 ILE ILE A . n A 1 55 THR 55 35 35 THR THR A . n A 1 56 MET 56 36 36 MET MET A . n A 1 57 GLY 57 37 37 GLY GLY A . n A 1 58 HIS 58 38 38 HIS HIS A . n A 1 59 THR 59 39 39 THR THR A . n A 1 60 ILE 60 40 40 ILE ILE A . n A 1 61 VAL 61 41 41 VAL VAL A . n A 1 62 MET 62 42 42 MET MET A . n A 1 63 GLY 63 43 43 GLY GLY A . n A 1 64 ARG 64 44 44 ARG ARG A . n A 1 65 ARG 65 45 45 ARG ARG A . n A 1 66 THR 66 46 46 THR THR A . n A 1 67 TRP 67 47 47 TRP TRP A . n A 1 68 ASP 68 48 48 ASP ASP A . n A 1 69 SER 69 49 49 SER SER A . n A 1 70 LEU 70 50 50 LEU LEU A . n A 1 71 PRO 71 51 51 PRO PRO A . n A 1 72 ALA 72 52 52 ALA ALA A . n A 1 73 LYS 73 53 53 LYS LYS A . n A 1 74 VAL 74 54 54 VAL VAL A . n A 1 75 ARG 75 55 55 ARG ARG A . n A 1 76 PRO 76 56 56 PRO PRO A . n A 1 77 LEU 77 57 57 LEU LEU A . n A 1 78 PRO 78 58 58 PRO PRO A . n A 1 79 GLY 79 59 59 GLY GLY A . n A 1 80 ARG 80 60 60 ARG ARG A . n A 1 81 ARG 81 61 61 ARG ARG A . n A 1 82 ASN 82 62 62 ASN ASN A . n A 1 83 VAL 83 63 63 VAL VAL A . n A 1 84 VAL 84 64 64 VAL VAL A . n A 1 85 LEU 85 65 65 LEU LEU A . n A 1 86 SER 86 66 66 SER SER A . n A 1 87 ARG 87 67 67 ARG ARG A . n A 1 88 GLN 88 68 68 GLN GLN A . n A 1 89 ALA 89 69 69 ALA ALA A . n A 1 90 ASP 90 70 70 ASP ASP A . n A 1 91 PHE 91 71 71 PHE PHE A . n A 1 92 MET 92 72 72 MET MET A . n A 1 93 ALA 93 73 73 ALA ALA A . n A 1 94 SER 94 74 74 SER SER A . n A 1 95 GLY 95 75 75 GLY GLY A . n A 1 96 ALA 96 76 76 ALA ALA A . n A 1 97 GLU 97 77 77 GLU GLU A . n A 1 98 VAL 98 78 78 VAL VAL A . n A 1 99 VAL 99 79 79 VAL VAL A . n A 1 100 GLY 100 80 80 GLY GLY A . n A 1 101 SER 101 81 81 SER SER A . n A 1 102 LEU 102 82 82 LEU LEU A . n A 1 103 GLU 103 83 83 GLU GLU A . n A 1 104 GLU 104 84 84 GLU GLU A . n A 1 105 ALA 105 85 85 ALA ALA A . n A 1 106 LEU 106 86 86 LEU LEU A . n A 1 107 THR 107 87 87 THR THR A . n A 1 108 SER 108 88 88 SER SER A . n A 1 109 PRO 109 89 89 PRO PRO A . n A 1 110 GLU 110 90 90 GLU GLU A . n A 1 111 THR 111 91 91 THR THR A . n A 1 112 TRP 112 92 92 TRP TRP A . n A 1 113 VAL 113 93 93 VAL VAL A . n A 1 114 ILE 114 94 94 ILE ILE A . n A 1 115 GLY 115 95 95 GLY GLY A . n A 1 116 GLY 116 96 96 GLY GLY A . n A 1 117 GLY 117 97 97 GLY GLY A . n A 1 118 GLN 118 98 98 GLN GLN A . n A 1 119 VAL 119 99 99 VAL VAL A . n A 1 120 TYR 120 100 100 TYR TYR A . n A 1 121 ALA 121 101 101 ALA ALA A . n A 1 122 LEU 122 102 102 LEU LEU A . n A 1 123 ALA 123 103 103 ALA ALA A . n A 1 124 LEU 124 104 104 LEU LEU A . n A 1 125 PRO 125 105 105 PRO PRO A . n A 1 126 TYR 126 106 106 TYR TYR A . n A 1 127 ALA 127 107 107 ALA ALA A . n A 1 128 THR 128 108 108 THR THR A . n A 1 129 ARG 129 109 109 ARG ARG A . n A 1 130 CYS 130 110 110 CYS CYS A . n A 1 131 GLU 131 111 111 GLU GLU A . n A 1 132 VAL 132 112 112 VAL VAL A . n A 1 133 THR 133 113 113 THR THR A . n A 1 134 GLU 134 114 114 GLU GLU A . n A 1 135 VAL 135 115 115 VAL VAL A . n A 1 136 ASP 136 116 116 ASP ASP A . n A 1 137 ILE 137 117 117 ILE ILE A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 LEU 139 119 119 LEU LEU A . n A 1 140 PRO 140 120 120 PRO PRO A . n A 1 141 ARG 141 121 121 ARG ARG A . n A 1 142 GLU 142 122 122 GLU GLU A . n A 1 143 ALA 143 123 123 ALA ALA A . n A 1 144 GLY 144 124 124 GLY GLY A . n A 1 145 ASP 145 125 125 ASP ASP A . n A 1 146 ALA 146 126 126 ALA ALA A . n A 1 147 LEU 147 127 127 LEU LEU A . n A 1 148 ALA 148 128 128 ALA ALA A . n A 1 149 PRO 149 129 129 PRO PRO A . n A 1 150 VAL 150 130 130 VAL VAL A . n A 1 151 LEU 151 131 131 LEU LEU A . n A 1 152 ASP 152 132 132 ASP ASP A . n A 1 153 GLU 153 133 133 GLU GLU A . n A 1 154 THR 154 134 134 THR THR A . n A 1 155 TRP 155 135 135 TRP TRP A . n A 1 156 ARG 156 136 136 ARG ARG A . n A 1 157 GLY 157 137 137 GLY GLY A . n A 1 158 GLU 158 138 138 GLU GLU A . n A 1 159 THR 159 139 139 THR THR A . n A 1 160 GLY 160 140 140 GLY GLY A . n A 1 161 GLU 161 141 141 GLU GLU A . n A 1 162 TRP 162 142 142 TRP TRP A . n A 1 163 ARG 163 143 143 ARG ARG A . n A 1 164 PHE 164 144 144 PHE PHE A . n A 1 165 SER 165 145 145 SER SER A . n A 1 166 ARG 166 146 146 ARG ARG A . n A 1 167 SER 167 147 147 SER SER A . n A 1 168 GLY 168 148 148 GLY GLY A . n A 1 169 LEU 169 149 149 LEU LEU A . n A 1 170 ARG 170 150 150 ARG ARG A . n A 1 171 TYR 171 151 151 TYR TYR A . n A 1 172 ARG 172 152 152 ARG ARG A . n A 1 173 LEU 173 153 153 LEU LEU A . n A 1 174 TYR 174 154 154 TYR TYR A . n A 1 175 SER 175 155 155 SER SER A . n A 1 176 TYR 176 156 156 TYR TYR A . n A 1 177 HIS 177 157 157 HIS HIS A . n A 1 178 ARG 178 158 158 ARG ARG A . n A 1 179 SER 179 159 159 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP 1 201 160 NAP NAP A . C 3 H9I 1 202 161 H9I 214 A . D 4 EDO 1 203 162 EDO EDO A . E 4 EDO 1 204 164 EDO EDO A . F 4 EDO 1 205 165 EDO EDO A . G 4 EDO 1 206 166 EDO EDO A . H 4 EDO 1 207 1 EDO EDO A . I 5 HOH 1 301 33 HOH HOH A . I 5 HOH 2 302 20 HOH HOH A . I 5 HOH 3 303 1 HOH HOH A . I 5 HOH 4 304 5 HOH HOH A . I 5 HOH 5 305 4 HOH HOH A . I 5 HOH 6 306 172 HOH HOH A . I 5 HOH 7 307 153 HOH HOH A . I 5 HOH 8 308 2 HOH HOH A . I 5 HOH 9 309 195 HOH HOH A . I 5 HOH 10 310 147 HOH HOH A . I 5 HOH 11 311 155 HOH HOH A . I 5 HOH 12 312 49 HOH HOH A . I 5 HOH 13 313 188 HOH HOH A . I 5 HOH 14 314 191 HOH HOH A . I 5 HOH 15 315 47 HOH HOH A . I 5 HOH 16 316 137 HOH HOH A . I 5 HOH 17 317 183 HOH HOH A . I 5 HOH 18 318 135 HOH HOH A . I 5 HOH 19 319 75 HOH HOH A . I 5 HOH 20 320 15 HOH HOH A . I 5 HOH 21 321 26 HOH HOH A . I 5 HOH 22 322 189 HOH HOH A . I 5 HOH 23 323 94 HOH HOH A . I 5 HOH 24 324 159 HOH HOH A . I 5 HOH 25 325 31 HOH HOH A . I 5 HOH 26 326 100 HOH HOH A . I 5 HOH 27 327 27 HOH HOH A . I 5 HOH 28 328 115 HOH HOH A . I 5 HOH 29 329 43 HOH HOH A . I 5 HOH 30 330 186 HOH HOH A . I 5 HOH 31 331 113 HOH HOH A . I 5 HOH 32 332 133 HOH HOH A . I 5 HOH 33 333 132 HOH HOH A . I 5 HOH 34 334 122 HOH HOH A . I 5 HOH 35 335 76 HOH HOH A . I 5 HOH 36 336 85 HOH HOH A . I 5 HOH 37 337 221 HOH HOH A . I 5 HOH 38 338 139 HOH HOH A . I 5 HOH 39 339 196 HOH HOH A . I 5 HOH 40 340 12 HOH HOH A . I 5 HOH 41 341 130 HOH HOH A . I 5 HOH 42 342 35 HOH HOH A . I 5 HOH 43 343 98 HOH HOH A . I 5 HOH 44 344 171 HOH HOH A . I 5 HOH 45 345 125 HOH HOH A . I 5 HOH 46 346 103 HOH HOH A . I 5 HOH 47 347 116 HOH HOH A . I 5 HOH 48 348 104 HOH HOH A . I 5 HOH 49 349 89 HOH HOH A . I 5 HOH 50 350 102 HOH HOH A . I 5 HOH 51 351 7 HOH HOH A . I 5 HOH 52 352 96 HOH HOH A . I 5 HOH 53 353 99 HOH HOH A . I 5 HOH 54 354 68 HOH HOH A . I 5 HOH 55 355 150 HOH HOH A . I 5 HOH 56 356 149 HOH HOH A . I 5 HOH 57 357 194 HOH HOH A . I 5 HOH 58 358 119 HOH HOH A . I 5 HOH 59 359 110 HOH HOH A . I 5 HOH 60 360 8 HOH HOH A . I 5 HOH 61 361 126 HOH HOH A . I 5 HOH 62 362 168 HOH HOH A . I 5 HOH 63 363 114 HOH HOH A . I 5 HOH 64 364 79 HOH HOH A . I 5 HOH 65 365 124 HOH HOH A . I 5 HOH 66 366 167 HOH HOH A . I 5 HOH 67 367 118 HOH HOH A . I 5 HOH 68 368 101 HOH HOH A . I 5 HOH 69 369 157 HOH HOH A . I 5 HOH 70 370 92 HOH HOH A . I 5 HOH 71 371 143 HOH HOH A . I 5 HOH 72 372 87 HOH HOH A . I 5 HOH 73 373 108 HOH HOH A . I 5 HOH 74 374 213 HOH HOH A . I 5 HOH 75 375 97 HOH HOH A . I 5 HOH 76 376 62 HOH HOH A . I 5 HOH 77 377 105 HOH HOH A . I 5 HOH 78 378 28 HOH HOH A . I 5 HOH 79 379 176 HOH HOH A . I 5 HOH 80 380 192 HOH HOH A . I 5 HOH 81 381 91 HOH HOH A . I 5 HOH 82 382 152 HOH HOH A . I 5 HOH 83 383 120 HOH HOH A . I 5 HOH 84 384 177 HOH HOH A . I 5 HOH 85 385 164 HOH HOH A . I 5 HOH 86 386 70 HOH HOH A . I 5 HOH 87 387 144 HOH HOH A . I 5 HOH 88 388 112 HOH HOH A . I 5 HOH 89 389 156 HOH HOH A . I 5 HOH 90 390 201 HOH HOH A . I 5 HOH 91 391 216 HOH HOH A . I 5 HOH 92 392 95 HOH HOH A . I 5 HOH 93 393 71 HOH HOH A . I 5 HOH 94 394 13 HOH HOH A . I 5 HOH 95 395 138 HOH HOH A . I 5 HOH 96 396 19 HOH HOH A . I 5 HOH 97 397 145 HOH HOH A . I 5 HOH 98 398 106 HOH HOH A . I 5 HOH 99 399 107 HOH HOH A . I 5 HOH 100 400 32 HOH HOH A . I 5 HOH 101 401 44 HOH HOH A . I 5 HOH 102 402 90 HOH HOH A . I 5 HOH 103 403 170 HOH HOH A . I 5 HOH 104 404 40 HOH HOH A . I 5 HOH 105 405 88 HOH HOH A . I 5 HOH 106 406 209 HOH HOH A . I 5 HOH 107 407 93 HOH HOH A . I 5 HOH 108 408 187 HOH HOH A . I 5 HOH 109 409 9 HOH HOH A . I 5 HOH 110 410 175 HOH HOH A . I 5 HOH 111 411 29 HOH HOH A . I 5 HOH 112 412 111 HOH HOH A . I 5 HOH 113 413 166 HOH HOH A . I 5 HOH 114 414 223 HOH HOH A . I 5 HOH 115 415 136 HOH HOH A . I 5 HOH 116 416 128 HOH HOH A . I 5 HOH 117 417 174 HOH HOH A . I 5 HOH 118 418 61 HOH HOH A . I 5 HOH 119 419 160 HOH HOH A . I 5 HOH 120 420 11 HOH HOH A . I 5 HOH 121 421 181 HOH HOH A . I 5 HOH 122 422 46 HOH HOH A . I 5 HOH 123 423 17 HOH HOH A . I 5 HOH 124 424 141 HOH HOH A . I 5 HOH 125 425 182 HOH HOH A . I 5 HOH 126 426 204 HOH HOH A . I 5 HOH 127 427 198 HOH HOH A . I 5 HOH 128 428 16 HOH HOH A . I 5 HOH 129 429 121 HOH HOH A . I 5 HOH 130 430 3 HOH HOH A . I 5 HOH 131 431 18 HOH HOH A . I 5 HOH 132 432 210 HOH HOH A . I 5 HOH 133 433 131 HOH HOH A . I 5 HOH 134 434 86 HOH HOH A . I 5 HOH 135 435 212 HOH HOH A . I 5 HOH 136 436 148 HOH HOH A . I 5 HOH 137 437 14 HOH HOH A . I 5 HOH 138 438 37 HOH HOH A . I 5 HOH 139 439 142 HOH HOH A . I 5 HOH 140 440 42 HOH HOH A . I 5 HOH 141 441 151 HOH HOH A . I 5 HOH 142 442 162 HOH HOH A . I 5 HOH 143 443 179 HOH HOH A . I 5 HOH 144 444 190 HOH HOH A . I 5 HOH 145 445 73 HOH HOH A . I 5 HOH 146 446 24 HOH HOH A . I 5 HOH 147 447 22 HOH HOH A . I 5 HOH 148 448 180 HOH HOH A . I 5 HOH 149 449 81 HOH HOH A . I 5 HOH 150 450 30 HOH HOH A . I 5 HOH 151 451 211 HOH HOH A . I 5 HOH 152 452 178 HOH HOH A . I 5 HOH 153 453 205 HOH HOH A . I 5 HOH 154 454 82 HOH HOH A . I 5 HOH 155 455 117 HOH HOH A . I 5 HOH 156 456 21 HOH HOH A . I 5 HOH 157 457 10 HOH HOH A . I 5 HOH 158 458 52 HOH HOH A . I 5 HOH 159 459 219 HOH HOH A . I 5 HOH 160 460 154 HOH HOH A . I 5 HOH 161 461 203 HOH HOH A . I 5 HOH 162 462 34 HOH HOH A . I 5 HOH 163 463 218 HOH HOH A . I 5 HOH 164 464 207 HOH HOH A . I 5 HOH 165 465 193 HOH HOH A . I 5 HOH 166 466 45 HOH HOH A . I 5 HOH 167 467 80 HOH HOH A . I 5 HOH 168 468 109 HOH HOH A . I 5 HOH 169 469 158 HOH HOH A . I 5 HOH 170 470 39 HOH HOH A . I 5 HOH 171 471 206 HOH HOH A . I 5 HOH 172 472 67 HOH HOH A . I 5 HOH 173 473 57 HOH HOH A . I 5 HOH 174 474 214 HOH HOH A . I 5 HOH 175 475 146 HOH HOH A . I 5 HOH 176 476 165 HOH HOH A . I 5 HOH 177 477 83 HOH HOH A . I 5 HOH 178 478 129 HOH HOH A . I 5 HOH 179 479 60 HOH HOH A . I 5 HOH 180 480 202 HOH HOH A . I 5 HOH 181 481 23 HOH HOH A . I 5 HOH 182 482 55 HOH HOH A . I 5 HOH 183 483 69 HOH HOH A . I 5 HOH 184 484 173 HOH HOH A . I 5 HOH 185 485 217 HOH HOH A . I 5 HOH 186 486 197 HOH HOH A . I 5 HOH 187 487 58 HOH HOH A . I 5 HOH 188 488 59 HOH HOH A . I 5 HOH 189 489 41 HOH HOH A . I 5 HOH 190 490 66 HOH HOH A . I 5 HOH 191 491 54 HOH HOH A . I 5 HOH 192 492 215 HOH HOH A . I 5 HOH 193 493 199 HOH HOH A . I 5 HOH 194 494 169 HOH HOH A . I 5 HOH 195 495 222 HOH HOH A . I 5 HOH 196 496 184 HOH HOH A . I 5 HOH 197 497 185 HOH HOH A . I 5 HOH 198 498 140 HOH HOH A . I 5 HOH 199 499 25 HOH HOH A . I 5 HOH 200 500 74 HOH HOH A . I 5 HOH 201 501 163 HOH HOH A . I 5 HOH 202 502 53 HOH HOH A . I 5 HOH 203 503 134 HOH HOH A . I 5 HOH 204 504 72 HOH HOH A . I 5 HOH 205 505 208 HOH HOH A . I 5 HOH 206 506 200 HOH HOH A . I 5 HOH 207 507 6 HOH HOH A . I 5 HOH 208 508 161 HOH HOH A . I 5 HOH 209 509 123 HOH HOH A . I 5 HOH 210 510 65 HOH HOH A . I 5 HOH 211 511 220 HOH HOH A . I 5 HOH 212 512 56 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU -6 ? CG ? A LEU 14 CG 2 1 Y 1 A LEU -6 ? CD1 ? A LEU 14 CD1 3 1 Y 1 A LEU -6 ? CD2 ? A LEU 14 CD2 4 1 Y 1 A GLU 133 ? CG ? A GLU 153 CG 5 1 Y 1 A GLU 133 ? CD ? A GLU 153 CD 6 1 Y 1 A GLU 133 ? OE1 ? A GLU 153 OE1 7 1 Y 1 A GLU 133 ? OE2 ? A GLU 153 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_2829 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.11 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 7 # _cell.entry_id 5SD3 _cell.length_a 29.560 _cell.length_b 67.430 _cell.length_c 72.040 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD3 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5SD3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 32 _exptl_crystal.density_Matthews 1.8 _exptl_crystal.pdbx_mosaicity 0.111 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH . _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details 'PACT C7 (292926c7): 200mM Sodium chloride, 100mM HEPES pH7, 20% PEG6000, 10mg/mL, cryo 20% EG, puck kpw8-8' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.pdbx_collection_date 2017-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'C 111' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5SD3 _reflns.pdbx_diffrn_id 1 _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 50 _reflns.pdbx_number_measured_all 236777 _reflns.number_obs 35541 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_netI_over_sigmaI 17.030 _reflns.percent_possible_obs 98.000 _reflns.B_iso_Wilson_estimate 17.162 _reflns.Rmerge_F_obs 0.998 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.067 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star 1.300 1.330 8874 ? 2172 ? 0.394 3.070 ? ? ? ? ? 2634 ? ? 0.854 ? ? 82.500 0.448 ? ? 1 ? ? 1.330 1.370 11030 ? 2353 ? 0.343 3.900 ? ? ? ? ? 2568 ? ? 0.916 ? ? 91.600 0.385 ? ? 2 ? ? 1.370 1.410 14549 ? 2520 ? 0.299 5.110 ? ? ? ? ? 2535 ? ? 0.945 ? ? 99.400 0.329 ? ? 3 ? ? 1.410 1.450 15910 ? 2389 ? 0.251 6.720 ? ? ? ? ? 2389 ? ? 0.967 ? ? 100.000 0.273 ? ? 4 ? ? 1.450 1.500 17126 ? 2390 ? 0.207 8.630 ? ? ? ? ? 2391 ? ? 0.979 ? ? 100.000 0.223 ? ? 5 ? ? 1.500 1.550 16536 ? 2289 ? 0.170 10.450 ? ? ? ? ? 2289 ? ? 0.984 ? ? 100.000 0.183 ? ? 6 ? ? 1.550 1.610 15855 ? 2200 ? 0.143 12.250 ? ? ? ? ? 2200 ? ? 0.990 ? ? 100.000 0.155 ? ? 7 ? ? 1.610 1.680 15345 ? 2126 ? 0.120 14.450 ? ? ? ? ? 2126 ? ? 0.993 ? ? 100.000 0.129 ? ? 8 ? ? 1.680 1.750 14950 ? 2064 ? 0.106 16.390 ? ? ? ? ? 2065 ? ? 0.993 ? ? 100.000 0.114 ? ? 9 ? ? 1.750 1.840 14240 ? 1963 ? 0.085 19.500 ? ? ? ? ? 1964 ? ? 0.996 ? ? 99.900 0.091 ? ? 10 ? ? 1.840 1.940 13429 ? 1862 ? 0.074 22.520 ? ? ? ? ? 1864 ? ? 0.996 ? ? 99.900 0.080 ? ? 11 ? ? 1.940 2.060 12820 ? 1777 ? 0.064 25.700 ? ? ? ? ? 1779 ? ? 0.997 ? ? 99.900 0.069 ? ? 12 ? ? 2.060 2.200 11944 ? 1662 ? 0.059 27.660 ? ? ? ? ? 1664 ? ? 0.997 ? ? 99.900 0.064 ? ? 13 ? ? 2.200 2.370 11196 ? 1559 ? 0.057 28.740 ? ? ? ? ? 1559 ? ? 0.997 ? ? 100.000 0.062 ? ? 14 ? ? 2.370 2.600 10318 ? 1459 ? 0.053 30.990 ? ? ? ? ? 1463 ? ? 0.997 ? ? 99.700 0.057 ? ? 15 ? ? 2.600 2.910 9276 ? 1310 ? 0.051 32.500 ? ? ? ? ? 1312 ? ? 0.997 ? ? 99.800 0.056 ? ? 16 ? ? 2.910 3.360 8223 ? 1171 ? 0.047 34.110 ? ? ? ? ? 1177 ? ? 0.998 ? ? 99.500 0.050 ? ? 17 ? ? 3.360 4.110 6954 ? 1009 ? 0.045 35.580 ? ? ? ? ? 1013 ? ? 0.997 ? ? 99.600 0.049 ? ? 18 ? ? 4.110 5.810 5377 ? 796 ? 0.044 35.580 ? ? ? ? ? 798 ? ? 0.997 ? ? 99.700 0.047 ? ? 19 ? ? 5.810 ? 2825 ? 470 ? 0.043 33.460 ? ? ? ? ? 477 ? ? 0.998 ? ? 98.500 0.047 ? ? 20 ? ? # _refine.entry_id 5SD3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 27.0730 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.9900 _refine.ls_number_reflns_obs 35540 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1517 _refine.ls_R_factor_R_work 0.1509 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1631 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.7000 _refine.ls_number_reflns_R_free 2026 _refine.ls_number_reflns_R_work 33514 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.5222 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 63.910 _refine.B_iso_min 5.930 _refine.pdbx_overall_phase_error 16.5300 _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1290 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 97 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1599 _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 27.0730 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1476 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2020 0.950 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 212 0.080 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 275 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 572 23.806 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.3000 1.3325 14 82.0000 1970 . 0.2231 0.2847 . 106 . 2076 . 'X-RAY DIFFRACTION' . 1.3325 1.3685 14 91.0000 2189 . 0.2020 0.2380 . 143 . 2332 . 'X-RAY DIFFRACTION' . 1.3685 1.4088 14 99.0000 2400 . 0.1896 0.2111 . 161 . 2561 . 'X-RAY DIFFRACTION' . 1.4088 1.4543 14 100.0000 2361 . 0.1735 0.2115 . 153 . 2514 . 'X-RAY DIFFRACTION' . 1.4543 1.5062 14 100.0000 2417 . 0.1670 0.1691 . 133 . 2550 . 'X-RAY DIFFRACTION' . 1.5062 1.5665 14 100.0000 2457 . 0.1627 0.1736 . 135 . 2592 . 'X-RAY DIFFRACTION' . 1.5665 1.6378 14 100.0000 2409 . 0.1592 0.2002 . 161 . 2570 . 'X-RAY DIFFRACTION' . 1.6378 1.7242 14 100.0000 2414 . 0.1540 0.1670 . 146 . 2560 . 'X-RAY DIFFRACTION' . 1.7242 1.8322 14 100.0000 2413 . 0.1540 0.1731 . 151 . 2564 . 'X-RAY DIFFRACTION' . 1.8322 1.9736 14 100.0000 2469 . 0.1461 0.1611 . 137 . 2606 . 'X-RAY DIFFRACTION' . 1.9736 2.1721 14 100.0000 2430 . 0.1453 0.1582 . 143 . 2573 . 'X-RAY DIFFRACTION' . 2.1721 2.4862 14 100.0000 2475 . 0.1503 0.1521 . 151 . 2626 . 'X-RAY DIFFRACTION' . 2.4862 3.1317 14 100.0000 2496 . 0.1472 0.1504 . 137 . 2633 . 'X-RAY DIFFRACTION' . 3.1317 27.0787 14 100.0000 2614 . 0.1316 0.1390 . 169 . 2783 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5SD3 _struct.title 'Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1088' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5SD3 _struct_keywords.text ;Mycobacterium tuberculosis, DHFR, NADP, Folate, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; _struct_keywords.pdbx_keywords 'OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_MYCTU _struct_ref.pdbx_db_accession P9WNX1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVG SLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS ; _struct_ref.pdbx_align_begin 3 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5SD3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P9WNX1 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5SD3 MET A 1 ? UNP P9WNX1 ? ? 'initiating methionine' -19 1 1 5SD3 GLY A 2 ? UNP P9WNX1 ? ? 'expression tag' -18 2 1 5SD3 SER A 3 ? UNP P9WNX1 ? ? 'expression tag' -17 3 1 5SD3 SER A 4 ? UNP P9WNX1 ? ? 'expression tag' -16 4 1 5SD3 HIS A 5 ? UNP P9WNX1 ? ? 'expression tag' -15 5 1 5SD3 HIS A 6 ? UNP P9WNX1 ? ? 'expression tag' -14 6 1 5SD3 HIS A 7 ? UNP P9WNX1 ? ? 'expression tag' -13 7 1 5SD3 HIS A 8 ? UNP P9WNX1 ? ? 'expression tag' -12 8 1 5SD3 HIS A 9 ? UNP P9WNX1 ? ? 'expression tag' -11 9 1 5SD3 HIS A 10 ? UNP P9WNX1 ? ? 'expression tag' -10 10 1 5SD3 SER A 11 ? UNP P9WNX1 ? ? 'expression tag' -9 11 1 5SD3 SER A 12 ? UNP P9WNX1 ? ? 'expression tag' -8 12 1 5SD3 GLY A 13 ? UNP P9WNX1 ? ? 'expression tag' -7 13 1 5SD3 LEU A 14 ? UNP P9WNX1 ? ? 'expression tag' -6 14 1 5SD3 VAL A 15 ? UNP P9WNX1 ? ? 'expression tag' -5 15 1 5SD3 PRO A 16 ? UNP P9WNX1 ? ? 'expression tag' -4 16 1 5SD3 ARG A 17 ? UNP P9WNX1 ? ? 'expression tag' -3 17 1 5SD3 GLY A 18 ? UNP P9WNX1 ? ? 'expression tag' -2 18 1 5SD3 SER A 19 ? UNP P9WNX1 ? ? 'expression tag' -1 19 1 5SD3 HIS A 20 ? UNP P9WNX1 ? ? 'expression tag' 0 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'biological unit is a monomer, the same as asu' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 44 ? MET A 56 ? LEU A 24 MET A 36 1 ? 13 HELX_P HELX_P2 AA2 ARG A 64 ? LEU A 70 ? ARG A 44 LEU A 50 1 ? 7 HELX_P HELX_P3 AA3 SER A 101 ? LEU A 106 ? SER A 81 LEU A 86 1 ? 6 HELX_P HELX_P4 AA4 GLY A 116 ? LEU A 124 ? GLY A 96 LEU A 104 1 ? 9 HELX_P HELX_P5 AA5 PRO A 125 ? ALA A 127 ? PRO A 105 ALA A 107 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 75 A . ? ARG 55 A PRO 76 A ? PRO 56 A 1 -1.10 2 GLY 115 A . ? GLY 95 A GLY 116 A ? GLY 96 A 1 2.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 97 ? VAL A 99 ? GLU A 77 VAL A 79 AA1 2 ARG A 81 ? LEU A 85 ? ARG A 61 LEU A 65 AA1 3 THR A 59 ? GLY A 63 ? THR A 39 GLY A 43 AA1 4 GLU A 110 ? VAL A 113 ? GLU A 90 VAL A 93 AA1 5 MET A 21 ? ALA A 29 ? MET A 1 ALA A 9 AA1 6 ARG A 129 ? VAL A 135 ? ARG A 109 VAL A 115 AA1 7 ARG A 170 ? HIS A 177 ? ARG A 150 HIS A 157 AA1 8 ARG A 156 ? THR A 159 ? ARG A 136 THR A 139 AA2 1 GLU A 97 ? VAL A 99 ? GLU A 77 VAL A 79 AA2 2 ARG A 81 ? LEU A 85 ? ARG A 61 LEU A 65 AA2 3 THR A 59 ? GLY A 63 ? THR A 39 GLY A 43 AA2 4 GLU A 110 ? VAL A 113 ? GLU A 90 VAL A 93 AA2 5 MET A 21 ? ALA A 29 ? MET A 1 ALA A 9 AA2 6 ARG A 129 ? VAL A 135 ? ARG A 109 VAL A 115 AA2 7 ARG A 170 ? HIS A 177 ? ARG A 150 HIS A 157 AA2 8 ARG A 163 ? PHE A 164 ? ARG A 143 PHE A 144 AA3 1 VAL A 33 ? GLY A 35 ? VAL A 13 GLY A 15 AA3 2 ALA A 146 ? LEU A 147 ? ALA A 126 LEU A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 97 ? O GLU A 77 N VAL A 84 ? N VAL A 64 AA1 2 3 O ARG A 81 ? O ARG A 61 N ILE A 60 ? N ILE A 40 AA1 3 4 N THR A 59 ? N THR A 39 O TRP A 112 ? O TRP A 92 AA1 4 5 O VAL A 113 ? O VAL A 93 N GLY A 23 ? N GLY A 3 AA1 5 6 N GLN A 28 ? N GLN A 8 O VAL A 135 ? O VAL A 115 AA1 6 7 N GLU A 134 ? N GLU A 114 O ARG A 172 ? O ARG A 152 AA1 7 8 O HIS A 177 ? O HIS A 157 N ARG A 156 ? N ARG A 136 AA2 1 2 O GLU A 97 ? O GLU A 77 N VAL A 84 ? N VAL A 64 AA2 2 3 O ARG A 81 ? O ARG A 61 N ILE A 60 ? N ILE A 40 AA2 3 4 N THR A 59 ? N THR A 39 O TRP A 112 ? O TRP A 92 AA2 4 5 O VAL A 113 ? O VAL A 93 N GLY A 23 ? N GLY A 3 AA2 5 6 N GLN A 28 ? N GLN A 8 O VAL A 135 ? O VAL A 115 AA2 6 7 N GLU A 134 ? N GLU A 114 O ARG A 172 ? O ARG A 152 AA2 7 8 O TYR A 171 ? O TYR A 151 N ARG A 163 ? N ARG A 143 AA3 1 2 N ILE A 34 ? N ILE A 14 O ALA A 146 ? O ALA A 126 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 354 ? ? O A HOH 490 ? ? 2.17 2 1 OH A TYR 156 ? ? O2 A EDO 206 ? B 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 21 ? ? -84.02 34.20 2 1 LEU A 86 ? ? -102.31 56.69 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 12.8944 6.8189 14.4744 0.0674 0.0460 0.0692 0.0075 -0.0098 -0.0050 0.9282 1.0930 2.6980 -0.0350 0.5243 -0.6588 0.0665 -0.0634 -0.0051 0.0118 -0.0371 0.0149 0.0237 0.0268 0.0870 'X-RAY DIFFRACTION' 2 ? refined 7.2442 3.5394 10.5749 0.0494 0.0811 0.0608 -0.0092 -0.0220 -0.0024 1.9905 2.6391 1.7941 -1.2342 -1.3271 1.1449 0.0595 -0.0214 -0.0519 -0.0060 -0.0435 0.0427 0.0266 -0.0230 -0.0908 'X-RAY DIFFRACTION' 3 ? refined 3.1171 -3.6755 6.9495 0.0613 0.1186 0.1181 -0.0010 -0.0001 -0.0071 1.6164 4.2588 4.7284 -1.5639 2.4896 -2.1559 0.0943 0.0590 -0.1834 -0.0996 -0.2001 0.3857 -0.0094 0.1239 -0.3229 'X-RAY DIFFRACTION' 4 ? refined 14.9518 -6.6683 1.5444 0.0931 0.0805 0.0367 0.0071 0.0127 -0.0027 7.5237 4.6648 2.5761 -2.8624 0.9469 -0.0376 0.0757 -0.0446 -0.0180 0.1647 -0.0764 -0.2011 -0.0748 0.2096 0.0586 'X-RAY DIFFRACTION' 5 ? refined 18.4433 2.8886 -1.3939 0.1358 0.1227 0.1716 -0.0028 0.0024 -0.0064 2.1408 3.1184 1.8362 -2.1625 0.7837 -1.9892 -0.0747 -0.0857 0.1373 0.1409 0.2884 -0.5350 -0.0371 -0.1699 0.1099 'X-RAY DIFFRACTION' 6 ? refined 16.7251 8.8685 11.0348 0.0563 0.0413 0.0540 -0.0025 -0.0107 -0.0014 1.6040 1.6526 2.3677 0.0977 -0.5689 -0.5587 0.0880 -0.0270 -0.0674 0.0406 0.0363 -0.0373 -0.0538 -0.0606 0.0410 'X-RAY DIFFRACTION' 7 ? refined 16.4879 -0.0021 28.8592 0.2200 0.1427 0.1792 0.0270 -0.0535 0.0243 6.8184 7.4581 5.4379 -7.1266 -6.0783 6.3483 -0.2325 0.3034 0.0082 -0.4850 -0.2069 -0.1583 0.6780 0.4759 0.3251 'X-RAY DIFFRACTION' 8 ? refined 20.9520 14.7246 17.7314 0.0815 0.1092 0.0730 -0.0155 -0.0304 -0.0175 5.8604 3.1357 3.2949 1.9474 -3.0721 0.6394 0.1802 0.0482 -0.1937 -0.0048 0.3223 -0.4473 -0.0693 -0.2540 0.0406 'X-RAY DIFFRACTION' 9 ? refined 2.5505 12.2909 27.8347 0.1218 0.1125 0.0768 -0.0245 0.0013 0.0006 9.2508 4.2102 0.3266 6.2186 0.0694 0.1360 -0.0932 0.1790 -0.0479 0.0376 0.1080 0.2554 -0.2206 0.0967 -0.1480 'X-RAY DIFFRACTION' 10 ? refined 14.2326 16.8356 17.8018 0.1105 0.0820 0.1089 -0.0138 0.0142 0.0007 4.6375 0.1224 6.8015 0.6638 -5.6256 -0.7971 0.1819 0.0230 -0.2605 0.0241 0.2645 -0.0444 -0.0191 -0.1227 0.0543 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid -6 through 24 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 25 through 49 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 50 through 60 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 61 through 76 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 77 through 89 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resid 90 through 115 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resid 116 through 125 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 0 A 0 ;chain 'A' and (resid 126 through 139 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 0 A 0 ;chain 'A' and (resid 140 through 150 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 0 A 0 ;chain 'A' and (resid 151 through 159 ) ; ? ? ? ? ? # _pdbx_entry_details.entry_id 5SD3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 H9I C10 C Y N 147 H9I C12 C N N 148 H9I C13 C N N 149 H9I C14 C N N 150 H9I C20 C Y N 151 H9I C21 C Y N 152 H9I C22 C N N 153 H9I C23 C N N 154 H9I C24 C N N 155 H9I C01 C N N 156 H9I C02 C N N 157 H9I C03 C Y N 158 H9I C05 C Y N 159 H9I C08 C Y N 160 H9I C16 C Y N 161 H9I C17 C Y N 162 H9I C18 C Y N 163 H9I C19 C Y N 164 H9I C27 C N N 165 H9I C29 C N N 166 H9I N04 N Y N 167 H9I N06 N N N 168 H9I N07 N Y N 169 H9I N09 N N N 170 H9I O11 O N N 171 H9I O15 O N N 172 H9I O25 O N N 173 H9I O26 O N N 174 H9I O28 O N N 175 H9I H122 H N N 176 H9I H121 H N N 177 H9I H141 H N N 178 H9I H142 H N N 179 H9I H201 H N N 180 H9I H221 H N N 181 H9I H222 H N N 182 H9I H232 H N N 183 H9I H231 H N N 184 H9I H012 H N N 185 H9I H011 H N N 186 H9I H013 H N N 187 H9I H021 H N N 188 H9I H022 H N N 189 H9I H171 H N N 190 H9I H181 H N N 191 H9I H191 H N N 192 H9I H272 H N N 193 H9I H271 H N N 194 H9I H291 H N N 195 H9I H292 H N N 196 H9I H062 H N N 197 H9I H061 H N N 198 H9I H092 H N N 199 H9I H091 H N N 200 H9I H1 H N N 201 HIS N N N N 202 HIS CA C N S 203 HIS C C N N 204 HIS O O N N 205 HIS CB C N N 206 HIS CG C Y N 207 HIS ND1 N Y N 208 HIS CD2 C Y N 209 HIS CE1 C Y N 210 HIS NE2 N Y N 211 HIS OXT O N N 212 HIS H H N N 213 HIS H2 H N N 214 HIS HA H N N 215 HIS HB2 H N N 216 HIS HB3 H N N 217 HIS HD1 H N N 218 HIS HD2 H N N 219 HIS HE1 H N N 220 HIS HE2 H N N 221 HIS HXT H N N 222 HOH O O N N 223 HOH H1 H N N 224 HOH H2 H N N 225 ILE N N N N 226 ILE CA C N S 227 ILE C C N N 228 ILE O O N N 229 ILE CB C N S 230 ILE CG1 C N N 231 ILE CG2 C N N 232 ILE CD1 C N N 233 ILE OXT O N N 234 ILE H H N N 235 ILE H2 H N N 236 ILE HA H N N 237 ILE HB H N N 238 ILE HG12 H N N 239 ILE HG13 H N N 240 ILE HG21 H N N 241 ILE HG22 H N N 242 ILE HG23 H N N 243 ILE HD11 H N N 244 ILE HD12 H N N 245 ILE HD13 H N N 246 ILE HXT H N N 247 LEU N N N N 248 LEU CA C N S 249 LEU C C N N 250 LEU O O N N 251 LEU CB C N N 252 LEU CG C N N 253 LEU CD1 C N N 254 LEU CD2 C N N 255 LEU OXT O N N 256 LEU H H N N 257 LEU H2 H N N 258 LEU HA H N N 259 LEU HB2 H N N 260 LEU HB3 H N N 261 LEU HG H N N 262 LEU HD11 H N N 263 LEU HD12 H N N 264 LEU HD13 H N N 265 LEU HD21 H N N 266 LEU HD22 H N N 267 LEU HD23 H N N 268 LEU HXT H N N 269 LYS N N N N 270 LYS CA C N S 271 LYS C C N N 272 LYS O O N N 273 LYS CB C N N 274 LYS CG C N N 275 LYS CD C N N 276 LYS CE C N N 277 LYS NZ N N N 278 LYS OXT O N N 279 LYS H H N N 280 LYS H2 H N N 281 LYS HA H N N 282 LYS HB2 H N N 283 LYS HB3 H N N 284 LYS HG2 H N N 285 LYS HG3 H N N 286 LYS HD2 H N N 287 LYS HD3 H N N 288 LYS HE2 H N N 289 LYS HE3 H N N 290 LYS HZ1 H N N 291 LYS HZ2 H N N 292 LYS HZ3 H N N 293 LYS HXT H N N 294 MET N N N N 295 MET CA C N S 296 MET C C N N 297 MET O O N N 298 MET CB C N N 299 MET CG C N N 300 MET SD S N N 301 MET CE C N N 302 MET OXT O N N 303 MET H H N N 304 MET H2 H N N 305 MET HA H N N 306 MET HB2 H N N 307 MET HB3 H N N 308 MET HG2 H N N 309 MET HG3 H N N 310 MET HE1 H N N 311 MET HE2 H N N 312 MET HE3 H N N 313 MET HXT H N N 314 NAP PA P N R 315 NAP O1A O N N 316 NAP O2A O N N 317 NAP O5B O N N 318 NAP C5B C N N 319 NAP C4B C N R 320 NAP O4B O N N 321 NAP C3B C N R 322 NAP O3B O N N 323 NAP C2B C N R 324 NAP O2B O N N 325 NAP C1B C N R 326 NAP N9A N Y N 327 NAP C8A C Y N 328 NAP N7A N Y N 329 NAP C5A C Y N 330 NAP C6A C Y N 331 NAP N6A N N N 332 NAP N1A N Y N 333 NAP C2A C Y N 334 NAP N3A N Y N 335 NAP C4A C Y N 336 NAP O3 O N N 337 NAP PN P N N 338 NAP O1N O N N 339 NAP O2N O N N 340 NAP O5D O N N 341 NAP C5D C N N 342 NAP C4D C N R 343 NAP O4D O N N 344 NAP C3D C N S 345 NAP O3D O N N 346 NAP C2D C N R 347 NAP O2D O N N 348 NAP C1D C N R 349 NAP N1N N Y N 350 NAP C2N C Y N 351 NAP C3N C Y N 352 NAP C7N C N N 353 NAP O7N O N N 354 NAP N7N N N N 355 NAP C4N C Y N 356 NAP C5N C Y N 357 NAP C6N C Y N 358 NAP P2B P N N 359 NAP O1X O N N 360 NAP O2X O N N 361 NAP O3X O N N 362 NAP HOA2 H N N 363 NAP H51A H N N 364 NAP H52A H N N 365 NAP H4B H N N 366 NAP H3B H N N 367 NAP HO3A H N N 368 NAP H2B H N N 369 NAP H1B H N N 370 NAP H8A H N N 371 NAP H61A H N N 372 NAP H62A H N N 373 NAP H2A H N N 374 NAP H51N H N N 375 NAP H52N H N N 376 NAP H4D H N N 377 NAP H3D H N N 378 NAP HO3N H N N 379 NAP H2D H N N 380 NAP HO2N H N N 381 NAP H1D H N N 382 NAP H2N H N N 383 NAP H71N H N N 384 NAP H72N H N N 385 NAP H4N H N N 386 NAP H5N H N N 387 NAP H6N H N N 388 NAP HOP2 H N N 389 NAP HOP3 H N N 390 PHE N N N N 391 PHE CA C N S 392 PHE C C N N 393 PHE O O N N 394 PHE CB C N N 395 PHE CG C Y N 396 PHE CD1 C Y N 397 PHE CD2 C Y N 398 PHE CE1 C Y N 399 PHE CE2 C Y N 400 PHE CZ C Y N 401 PHE OXT O N N 402 PHE H H N N 403 PHE H2 H N N 404 PHE HA H N N 405 PHE HB2 H N N 406 PHE HB3 H N N 407 PHE HD1 H N N 408 PHE HD2 H N N 409 PHE HE1 H N N 410 PHE HE2 H N N 411 PHE HZ H N N 412 PHE HXT H N N 413 PRO N N N N 414 PRO CA C N S 415 PRO C C N N 416 PRO O O N N 417 PRO CB C N N 418 PRO CG C N N 419 PRO CD C N N 420 PRO OXT O N N 421 PRO H H N N 422 PRO HA H N N 423 PRO HB2 H N N 424 PRO HB3 H N N 425 PRO HG2 H N N 426 PRO HG3 H N N 427 PRO HD2 H N N 428 PRO HD3 H N N 429 PRO HXT H N N 430 SER N N N N 431 SER CA C N S 432 SER C C N N 433 SER O O N N 434 SER CB C N N 435 SER OG O N N 436 SER OXT O N N 437 SER H H N N 438 SER H2 H N N 439 SER HA H N N 440 SER HB2 H N N 441 SER HB3 H N N 442 SER HG H N N 443 SER HXT H N N 444 THR N N N N 445 THR CA C N S 446 THR C C N N 447 THR O O N N 448 THR CB C N R 449 THR OG1 O N N 450 THR CG2 C N N 451 THR OXT O N N 452 THR H H N N 453 THR H2 H N N 454 THR HA H N N 455 THR HB H N N 456 THR HG1 H N N 457 THR HG21 H N N 458 THR HG22 H N N 459 THR HG23 H N N 460 THR HXT H N N 461 TRP N N N N 462 TRP CA C N S 463 TRP C C N N 464 TRP O O N N 465 TRP CB C N N 466 TRP CG C Y N 467 TRP CD1 C Y N 468 TRP CD2 C Y N 469 TRP NE1 N Y N 470 TRP CE2 C Y N 471 TRP CE3 C Y N 472 TRP CZ2 C Y N 473 TRP CZ3 C Y N 474 TRP CH2 C Y N 475 TRP OXT O N N 476 TRP H H N N 477 TRP H2 H N N 478 TRP HA H N N 479 TRP HB2 H N N 480 TRP HB3 H N N 481 TRP HD1 H N N 482 TRP HE1 H N N 483 TRP HE3 H N N 484 TRP HZ2 H N N 485 TRP HZ3 H N N 486 TRP HH2 H N N 487 TRP HXT H N N 488 TYR N N N N 489 TYR CA C N S 490 TYR C C N N 491 TYR O O N N 492 TYR CB C N N 493 TYR CG C Y N 494 TYR CD1 C Y N 495 TYR CD2 C Y N 496 TYR CE1 C Y N 497 TYR CE2 C Y N 498 TYR CZ C Y N 499 TYR OH O N N 500 TYR OXT O N N 501 TYR H H N N 502 TYR H2 H N N 503 TYR HA H N N 504 TYR HB2 H N N 505 TYR HB3 H N N 506 TYR HD1 H N N 507 TYR HD2 H N N 508 TYR HE1 H N N 509 TYR HE2 H N N 510 TYR HH H N N 511 TYR HXT H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 H9I C02 C01 sing N N 138 H9I C03 C02 sing N N 139 H9I N04 C03 doub Y N 140 H9I C05 N04 sing Y N 141 H9I N06 C05 sing N N 142 H9I N07 C05 doub Y N 143 H9I C08 N07 sing Y N 144 H9I N09 C08 sing N N 145 H9I C10 C08 doub Y N 146 H9I O11 C10 sing N N 147 H9I C12 O11 sing N N 148 H9I C13 C12 sing N N 149 H9I O15 C14 sing N N 150 H9I C16 O15 sing N N 151 H9I C17 C16 doub Y N 152 H9I C18 C17 sing Y N 153 H9I C19 C18 doub Y N 154 H9I C20 C19 sing Y N 155 H9I C21 C20 doub Y N 156 H9I C22 C21 sing N N 157 H9I C23 C22 sing N N 158 H9I C24 C23 sing N N 159 H9I O25 C24 doub N N 160 H9I O26 C24 sing N N 161 H9I C14 C13 sing N N 162 H9I C27 C13 sing N N 163 H9I O28 C27 sing N N 164 H9I C29 O28 sing N N 165 H9I C03 C10 sing Y N 166 H9I C13 C29 sing N N 167 H9I C16 C21 sing Y N 168 H9I C12 H122 sing N N 169 H9I C12 H121 sing N N 170 H9I C14 H141 sing N N 171 H9I C14 H142 sing N N 172 H9I C20 H201 sing N N 173 H9I C22 H221 sing N N 174 H9I C22 H222 sing N N 175 H9I C23 H232 sing N N 176 H9I C23 H231 sing N N 177 H9I C01 H012 sing N N 178 H9I C01 H011 sing N N 179 H9I C01 H013 sing N N 180 H9I C02 H021 sing N N 181 H9I C02 H022 sing N N 182 H9I C17 H171 sing N N 183 H9I C18 H181 sing N N 184 H9I C19 H191 sing N N 185 H9I C27 H272 sing N N 186 H9I C27 H271 sing N N 187 H9I C29 H291 sing N N 188 H9I C29 H292 sing N N 189 H9I N06 H062 sing N N 190 H9I N06 H061 sing N N 191 H9I N09 H092 sing N N 192 H9I N09 H091 sing N N 193 H9I O26 H1 sing N N 194 HIS N CA sing N N 195 HIS N H sing N N 196 HIS N H2 sing N N 197 HIS CA C sing N N 198 HIS CA CB sing N N 199 HIS CA HA sing N N 200 HIS C O doub N N 201 HIS C OXT sing N N 202 HIS CB CG sing N N 203 HIS CB HB2 sing N N 204 HIS CB HB3 sing N N 205 HIS CG ND1 sing Y N 206 HIS CG CD2 doub Y N 207 HIS ND1 CE1 doub Y N 208 HIS ND1 HD1 sing N N 209 HIS CD2 NE2 sing Y N 210 HIS CD2 HD2 sing N N 211 HIS CE1 NE2 sing Y N 212 HIS CE1 HE1 sing N N 213 HIS NE2 HE2 sing N N 214 HIS OXT HXT sing N N 215 HOH O H1 sing N N 216 HOH O H2 sing N N 217 ILE N CA sing N N 218 ILE N H sing N N 219 ILE N H2 sing N N 220 ILE CA C sing N N 221 ILE CA CB sing N N 222 ILE CA HA sing N N 223 ILE C O doub N N 224 ILE C OXT sing N N 225 ILE CB CG1 sing N N 226 ILE CB CG2 sing N N 227 ILE CB HB sing N N 228 ILE CG1 CD1 sing N N 229 ILE CG1 HG12 sing N N 230 ILE CG1 HG13 sing N N 231 ILE CG2 HG21 sing N N 232 ILE CG2 HG22 sing N N 233 ILE CG2 HG23 sing N N 234 ILE CD1 HD11 sing N N 235 ILE CD1 HD12 sing N N 236 ILE CD1 HD13 sing N N 237 ILE OXT HXT sing N N 238 LEU N CA sing N N 239 LEU N H sing N N 240 LEU N H2 sing N N 241 LEU CA C sing N N 242 LEU CA CB sing N N 243 LEU CA HA sing N N 244 LEU C O doub N N 245 LEU C OXT sing N N 246 LEU CB CG sing N N 247 LEU CB HB2 sing N N 248 LEU CB HB3 sing N N 249 LEU CG CD1 sing N N 250 LEU CG CD2 sing N N 251 LEU CG HG sing N N 252 LEU CD1 HD11 sing N N 253 LEU CD1 HD12 sing N N 254 LEU CD1 HD13 sing N N 255 LEU CD2 HD21 sing N N 256 LEU CD2 HD22 sing N N 257 LEU CD2 HD23 sing N N 258 LEU OXT HXT sing N N 259 LYS N CA sing N N 260 LYS N H sing N N 261 LYS N H2 sing N N 262 LYS CA C sing N N 263 LYS CA CB sing N N 264 LYS CA HA sing N N 265 LYS C O doub N N 266 LYS C OXT sing N N 267 LYS CB CG sing N N 268 LYS CB HB2 sing N N 269 LYS CB HB3 sing N N 270 LYS CG CD sing N N 271 LYS CG HG2 sing N N 272 LYS CG HG3 sing N N 273 LYS CD CE sing N N 274 LYS CD HD2 sing N N 275 LYS CD HD3 sing N N 276 LYS CE NZ sing N N 277 LYS CE HE2 sing N N 278 LYS CE HE3 sing N N 279 LYS NZ HZ1 sing N N 280 LYS NZ HZ2 sing N N 281 LYS NZ HZ3 sing N N 282 LYS OXT HXT sing N N 283 MET N CA sing N N 284 MET N H sing N N 285 MET N H2 sing N N 286 MET CA C sing N N 287 MET CA CB sing N N 288 MET CA HA sing N N 289 MET C O doub N N 290 MET C OXT sing N N 291 MET CB CG sing N N 292 MET CB HB2 sing N N 293 MET CB HB3 sing N N 294 MET CG SD sing N N 295 MET CG HG2 sing N N 296 MET CG HG3 sing N N 297 MET SD CE sing N N 298 MET CE HE1 sing N N 299 MET CE HE2 sing N N 300 MET CE HE3 sing N N 301 MET OXT HXT sing N N 302 NAP PA O1A doub N N 303 NAP PA O2A sing N N 304 NAP PA O5B sing N N 305 NAP PA O3 sing N N 306 NAP O2A HOA2 sing N N 307 NAP O5B C5B sing N N 308 NAP C5B C4B sing N N 309 NAP C5B H51A sing N N 310 NAP C5B H52A sing N N 311 NAP C4B O4B sing N N 312 NAP C4B C3B sing N N 313 NAP C4B H4B sing N N 314 NAP O4B C1B sing N N 315 NAP C3B O3B sing N N 316 NAP C3B C2B sing N N 317 NAP C3B H3B sing N N 318 NAP O3B HO3A sing N N 319 NAP C2B O2B sing N N 320 NAP C2B C1B sing N N 321 NAP C2B H2B sing N N 322 NAP O2B P2B sing N N 323 NAP C1B N9A sing N N 324 NAP C1B H1B sing N N 325 NAP N9A C8A sing Y N 326 NAP N9A C4A sing Y N 327 NAP C8A N7A doub Y N 328 NAP C8A H8A sing N N 329 NAP N7A C5A sing Y N 330 NAP C5A C6A sing Y N 331 NAP C5A C4A doub Y N 332 NAP C6A N6A sing N N 333 NAP C6A N1A doub Y N 334 NAP N6A H61A sing N N 335 NAP N6A H62A sing N N 336 NAP N1A C2A sing Y N 337 NAP C2A N3A doub Y N 338 NAP C2A H2A sing N N 339 NAP N3A C4A sing Y N 340 NAP O3 PN sing N N 341 NAP PN O1N doub N N 342 NAP PN O2N sing N N 343 NAP PN O5D sing N N 344 NAP O5D C5D sing N N 345 NAP C5D C4D sing N N 346 NAP C5D H51N sing N N 347 NAP C5D H52N sing N N 348 NAP C4D O4D sing N N 349 NAP C4D C3D sing N N 350 NAP C4D H4D sing N N 351 NAP O4D C1D sing N N 352 NAP C3D O3D sing N N 353 NAP C3D C2D sing N N 354 NAP C3D H3D sing N N 355 NAP O3D HO3N sing N N 356 NAP C2D O2D sing N N 357 NAP C2D C1D sing N N 358 NAP C2D H2D sing N N 359 NAP O2D HO2N sing N N 360 NAP C1D N1N sing N N 361 NAP C1D H1D sing N N 362 NAP N1N C2N sing Y N 363 NAP N1N C6N doub Y N 364 NAP C2N C3N doub Y N 365 NAP C2N H2N sing N N 366 NAP C3N C7N sing N N 367 NAP C3N C4N sing Y N 368 NAP C7N O7N doub N N 369 NAP C7N N7N sing N N 370 NAP N7N H71N sing N N 371 NAP N7N H72N sing N N 372 NAP C4N C5N doub Y N 373 NAP C4N H4N sing N N 374 NAP C5N C6N sing Y N 375 NAP C5N H5N sing N N 376 NAP C6N H6N sing N N 377 NAP P2B O1X doub N N 378 NAP P2B O2X sing N N 379 NAP P2B O3X sing N N 380 NAP O2X HOP2 sing N N 381 NAP O3X HOP3 sing N N 382 PHE N CA sing N N 383 PHE N H sing N N 384 PHE N H2 sing N N 385 PHE CA C sing N N 386 PHE CA CB sing N N 387 PHE CA HA sing N N 388 PHE C O doub N N 389 PHE C OXT sing N N 390 PHE CB CG sing N N 391 PHE CB HB2 sing N N 392 PHE CB HB3 sing N N 393 PHE CG CD1 doub Y N 394 PHE CG CD2 sing Y N 395 PHE CD1 CE1 sing Y N 396 PHE CD1 HD1 sing N N 397 PHE CD2 CE2 doub Y N 398 PHE CD2 HD2 sing N N 399 PHE CE1 CZ doub Y N 400 PHE CE1 HE1 sing N N 401 PHE CE2 CZ sing Y N 402 PHE CE2 HE2 sing N N 403 PHE CZ HZ sing N N 404 PHE OXT HXT sing N N 405 PRO N CA sing N N 406 PRO N CD sing N N 407 PRO N H sing N N 408 PRO CA C sing N N 409 PRO CA CB sing N N 410 PRO CA HA sing N N 411 PRO C O doub N N 412 PRO C OXT sing N N 413 PRO CB CG sing N N 414 PRO CB HB2 sing N N 415 PRO CB HB3 sing N N 416 PRO CG CD sing N N 417 PRO CG HG2 sing N N 418 PRO CG HG3 sing N N 419 PRO CD HD2 sing N N 420 PRO CD HD3 sing N N 421 PRO OXT HXT sing N N 422 SER N CA sing N N 423 SER N H sing N N 424 SER N H2 sing N N 425 SER CA C sing N N 426 SER CA CB sing N N 427 SER CA HA sing N N 428 SER C O doub N N 429 SER C OXT sing N N 430 SER CB OG sing N N 431 SER CB HB2 sing N N 432 SER CB HB3 sing N N 433 SER OG HG sing N N 434 SER OXT HXT sing N N 435 THR N CA sing N N 436 THR N H sing N N 437 THR N H2 sing N N 438 THR CA C sing N N 439 THR CA CB sing N N 440 THR CA HA sing N N 441 THR C O doub N N 442 THR C OXT sing N N 443 THR CB OG1 sing N N 444 THR CB CG2 sing N N 445 THR CB HB sing N N 446 THR OG1 HG1 sing N N 447 THR CG2 HG21 sing N N 448 THR CG2 HG22 sing N N 449 THR CG2 HG23 sing N N 450 THR OXT HXT sing N N 451 TRP N CA sing N N 452 TRP N H sing N N 453 TRP N H2 sing N N 454 TRP CA C sing N N 455 TRP CA CB sing N N 456 TRP CA HA sing N N 457 TRP C O doub N N 458 TRP C OXT sing N N 459 TRP CB CG sing N N 460 TRP CB HB2 sing N N 461 TRP CB HB3 sing N N 462 TRP CG CD1 doub Y N 463 TRP CG CD2 sing Y N 464 TRP CD1 NE1 sing Y N 465 TRP CD1 HD1 sing N N 466 TRP CD2 CE2 doub Y N 467 TRP CD2 CE3 sing Y N 468 TRP NE1 CE2 sing Y N 469 TRP NE1 HE1 sing N N 470 TRP CE2 CZ2 sing Y N 471 TRP CE3 CZ3 doub Y N 472 TRP CE3 HE3 sing N N 473 TRP CZ2 CH2 doub Y N 474 TRP CZ2 HZ2 sing N N 475 TRP CZ3 CH2 sing Y N 476 TRP CZ3 HZ3 sing N N 477 TRP CH2 HH2 sing N N 478 TRP OXT HXT sing N N 479 TYR N CA sing N N 480 TYR N H sing N N 481 TYR N H2 sing N N 482 TYR CA C sing N N 483 TYR CA CB sing N N 484 TYR CA HA sing N N 485 TYR C O doub N N 486 TYR C OXT sing N N 487 TYR CB CG sing N N 488 TYR CB HB2 sing N N 489 TYR CB HB3 sing N N 490 TYR CG CD1 doub Y N 491 TYR CG CD2 sing Y N 492 TYR CD1 CE1 sing Y N 493 TYR CD1 HD1 sing N N 494 TYR CD2 CE2 doub Y N 495 TYR CD2 HD2 sing N N 496 TYR CE1 CZ doub Y N 497 TYR CE1 HE1 sing N N 498 TYR CE2 CZ sing Y N 499 TYR CE2 HE2 sing N N 500 TYR CZ OH sing N N 501 TYR OH HH sing N N 502 TYR OXT HXT sing N N 503 VAL N CA sing N N 504 VAL N H sing N N 505 VAL N H2 sing N N 506 VAL CA C sing N N 507 VAL CA CB sing N N 508 VAL CA HA sing N N 509 VAL C O doub N N 510 VAL C OXT sing N N 511 VAL CB CG1 sing N N 512 VAL CB CG2 sing N N 513 VAL CB HB sing N N 514 VAL CG1 HG11 sing N N 515 VAL CG1 HG12 sing N N 516 VAL CG1 HG13 sing N N 517 VAL CG2 HG21 sing N N 518 VAL CG2 HG22 sing N N 519 VAL CG2 HG23 sing N N 520 VAL OXT HXT sing N N 521 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number HHSN272201700059C _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'DHFR structures, SSGCID' _pdbx_deposit_group.group_description 'human and M. tuberculosis DHFR structures bound to ligands' _pdbx_deposit_group.group_type 'ground state' _pdbx_deposit_group.group_id G_1002223 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id H9I _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id H9I _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 5SD3 _atom_sites.fract_transf_matrix[1][1] 0.033829 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014830 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013881 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_