HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD3 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-1088 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-MAY-24 5SD3 1 REMARK REVDAT 2 02-MAR-22 5SD3 1 KEYWDS REVDAT 1 09-FEB-22 5SD3 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-1088 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 35540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0787 - 3.1317 1.00 2614 169 0.1316 0.1390 REMARK 3 2 3.1317 - 2.4862 1.00 2496 137 0.1472 0.1504 REMARK 3 3 2.4862 - 2.1721 1.00 2475 151 0.1503 0.1521 REMARK 3 4 2.1721 - 1.9736 1.00 2430 143 0.1453 0.1582 REMARK 3 5 1.9736 - 1.8322 1.00 2469 137 0.1461 0.1611 REMARK 3 6 1.8322 - 1.7242 1.00 2413 151 0.1540 0.1731 REMARK 3 7 1.7242 - 1.6378 1.00 2414 146 0.1540 0.1670 REMARK 3 8 1.6378 - 1.5665 1.00 2409 161 0.1592 0.2002 REMARK 3 9 1.5665 - 1.5062 1.00 2457 135 0.1627 0.1736 REMARK 3 10 1.5062 - 1.4543 1.00 2417 133 0.1670 0.1691 REMARK 3 11 1.4543 - 1.4088 1.00 2361 153 0.1735 0.2115 REMARK 3 12 1.4088 - 1.3685 0.99 2400 161 0.1896 0.2111 REMARK 3 13 1.3685 - 1.3325 0.91 2189 143 0.2020 0.2380 REMARK 3 14 1.3325 - 1.3000 0.82 1970 106 0.2231 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1476 REMARK 3 ANGLE : 0.950 2020 REMARK 3 CHIRALITY : 0.080 212 REMARK 3 PLANARITY : 0.007 275 REMARK 3 DIHEDRAL : 23.806 572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8944 6.8189 14.4744 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.0460 REMARK 3 T33: 0.0692 T12: 0.0075 REMARK 3 T13: -0.0098 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9282 L22: 1.0930 REMARK 3 L33: 2.6980 L12: -0.0350 REMARK 3 L13: 0.5243 L23: -0.6588 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.0118 S13: -0.0371 REMARK 3 S21: 0.0237 S22: -0.0634 S23: 0.0149 REMARK 3 S31: 0.0268 S32: 0.0870 S33: -0.0051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2442 3.5394 10.5749 REMARK 3 T TENSOR REMARK 3 T11: 0.0494 T22: 0.0811 REMARK 3 T33: 0.0608 T12: -0.0092 REMARK 3 T13: -0.0220 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.9905 L22: 2.6391 REMARK 3 L33: 1.7941 L12: -1.2342 REMARK 3 L13: -1.3271 L23: 1.1449 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.0060 S13: -0.0435 REMARK 3 S21: 0.0266 S22: -0.0214 S23: 0.0427 REMARK 3 S31: -0.0230 S32: -0.0908 S33: -0.0519 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1171 -3.6755 6.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.1186 REMARK 3 T33: 0.1181 T12: -0.0010 REMARK 3 T13: -0.0001 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.6164 L22: 4.2588 REMARK 3 L33: 4.7284 L12: -1.5639 REMARK 3 L13: 2.4896 L23: -2.1559 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: -0.0996 S13: -0.2001 REMARK 3 S21: -0.0094 S22: 0.0590 S23: 0.3857 REMARK 3 S31: 0.1239 S32: -0.3229 S33: -0.1834 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9518 -6.6683 1.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0805 REMARK 3 T33: 0.0367 T12: 0.0071 REMARK 3 T13: 0.0127 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 7.5237 L22: 4.6648 REMARK 3 L33: 2.5761 L12: -2.8624 REMARK 3 L13: 0.9469 L23: -0.0376 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.1647 S13: -0.0764 REMARK 3 S21: -0.0748 S22: -0.0446 S23: -0.2011 REMARK 3 S31: 0.2096 S32: 0.0586 S33: -0.0180 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4433 2.8886 -1.3939 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1227 REMARK 3 T33: 0.1716 T12: -0.0028 REMARK 3 T13: 0.0024 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.1408 L22: 3.1184 REMARK 3 L33: 1.8362 L12: -2.1625 REMARK 3 L13: 0.7837 L23: -1.9892 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.1409 S13: 0.2884 REMARK 3 S21: -0.0371 S22: -0.0857 S23: -0.5350 REMARK 3 S31: -0.1699 S32: 0.1099 S33: 0.1373 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7251 8.8685 11.0348 REMARK 3 T TENSOR REMARK 3 T11: 0.0563 T22: 0.0413 REMARK 3 T33: 0.0540 T12: -0.0025 REMARK 3 T13: -0.0107 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.6040 L22: 1.6526 REMARK 3 L33: 2.3677 L12: 0.0977 REMARK 3 L13: -0.5689 L23: -0.5587 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: 0.0406 S13: 0.0363 REMARK 3 S21: -0.0538 S22: -0.0270 S23: -0.0373 REMARK 3 S31: -0.0606 S32: 0.0410 S33: -0.0674 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4879 -0.0021 28.8592 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.1427 REMARK 3 T33: 0.1792 T12: 0.0270 REMARK 3 T13: -0.0535 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 6.8184 L22: 7.4581 REMARK 3 L33: 5.4379 L12: -7.1266 REMARK 3 L13: -6.0783 L23: 6.3483 REMARK 3 S TENSOR REMARK 3 S11: -0.2325 S12: -0.4850 S13: -0.2069 REMARK 3 S21: 0.6780 S22: 0.3034 S23: -0.1583 REMARK 3 S31: 0.4759 S32: 0.3251 S33: 0.0082 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9520 14.7246 17.7314 REMARK 3 T TENSOR REMARK 3 T11: 0.0815 T22: 0.1092 REMARK 3 T33: 0.0730 T12: -0.0155 REMARK 3 T13: -0.0304 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 5.8604 L22: 3.1357 REMARK 3 L33: 3.2949 L12: 1.9474 REMARK 3 L13: -3.0721 L23: 0.6394 REMARK 3 S TENSOR REMARK 3 S11: 0.1802 S12: -0.0048 S13: 0.3223 REMARK 3 S21: -0.0693 S22: 0.0482 S23: -0.4473 REMARK 3 S31: -0.2540 S32: 0.0406 S33: -0.1937 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5505 12.2909 27.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1125 REMARK 3 T33: 0.0768 T12: -0.0245 REMARK 3 T13: 0.0013 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 9.2508 L22: 4.2102 REMARK 3 L33: 0.3266 L12: 6.2186 REMARK 3 L13: 0.0694 L23: 0.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.0932 S12: 0.0376 S13: 0.1080 REMARK 3 S21: -0.2206 S22: 0.1790 S23: 0.2554 REMARK 3 S31: 0.0967 S32: -0.1480 S33: -0.0479 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2326 16.8356 17.8018 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.0820 REMARK 3 T33: 0.1089 T12: -0.0138 REMARK 3 T13: 0.0142 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.6375 L22: 0.1224 REMARK 3 L33: 6.8015 L12: 0.6638 REMARK 3 L13: -5.6256 L23: -0.7971 REMARK 3 S TENSOR REMARK 3 S11: 0.1819 S12: 0.0241 S13: 0.2645 REMARK 3 S21: -0.0191 S22: 0.0230 S23: -0.0444 REMARK 3 S31: -0.1227 S32: 0.0543 S33: -0.2605 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PACT C7 (292926C7): 200MM SODIUM REMARK 280 CHLORIDE, 100MM HEPES PH7, 20% PEG6000, 10MG/ML, CRYO 20% EG, REMARK 280 PUCK KPW8-8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 354 O HOH A 490 2.17 REMARK 500 OH TYR A 156 O2 EDO A 206 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 34.20 -84.02 REMARK 500 LEU A 86 56.69 -102.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SD3 A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SD3 MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SD3 GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD3 HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET H9I A 202 29 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 8 HET EDO A 207 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM H9I 3-{2-[(3-{[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 H9I OXY]METHYL}OXETAN-3-YL)METHOXY]PHENYL}PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 H9I C20 H26 N4 O5 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *212(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 SER A 81 LEU A 86 1 6 HELIX 4 AA4 GLY A 96 LEU A 104 1 9 HELIX 5 AA5 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 -1.10 CISPEP 2 GLY A 95 GLY A 96 0 2.31 CRYST1 29.560 67.430 72.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033829 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013881 0.00000