HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD9 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO SAPIENS BOUND TITLE 2 TO NADP AND SDDC INHIBITOR SDDC-1096 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HOMO SAPIENS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-MAY-24 5SD9 1 REMARK REVDAT 2 02-MAR-22 5SD9 1 KEYWDS REVDAT 1 09-FEB-22 5SD9 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO JRNL TITL 2 SAPIENS BOUND TO NADP AND SDDC INHIBITOR SDDC-1096 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4099 - 5.0597 0.98 1736 147 0.1778 0.2212 REMARK 3 2 5.0597 - 4.0166 1.00 1658 146 0.1305 0.1283 REMARK 3 3 4.0166 - 3.5091 1.00 1619 131 0.1363 0.1712 REMARK 3 4 3.5091 - 3.1883 1.00 1607 141 0.1497 0.1735 REMARK 3 5 3.1883 - 2.9598 1.00 1586 157 0.1624 0.1614 REMARK 3 6 2.9598 - 2.7853 1.00 1580 152 0.1641 0.1943 REMARK 3 7 2.7853 - 2.6458 1.00 1568 151 0.1660 0.1976 REMARK 3 8 2.6458 - 2.5307 1.00 1576 146 0.1673 0.2075 REMARK 3 9 2.5307 - 2.4332 1.00 1591 134 0.1670 0.1785 REMARK 3 10 2.4332 - 2.3493 1.00 1575 130 0.1696 0.1945 REMARK 3 11 2.3493 - 2.2758 1.00 1557 145 0.1695 0.2103 REMARK 3 12 2.2758 - 2.2108 1.00 1573 143 0.1779 0.2321 REMARK 3 13 2.2108 - 2.1526 1.00 1569 129 0.1828 0.2594 REMARK 3 14 2.1526 - 2.1001 1.00 1570 122 0.2100 0.2408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1682 REMARK 3 ANGLE : 0.882 2300 REMARK 3 CHIRALITY : 0.060 244 REMARK 3 PLANARITY : 0.005 311 REMARK 3 DIHEDRAL : 18.367 1042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1441 11.3940 -20.6333 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.2071 REMARK 3 T33: 0.2278 T12: 0.0044 REMARK 3 T13: -0.0048 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.4288 L22: 6.4143 REMARK 3 L33: 7.9963 L12: 0.5192 REMARK 3 L13: 1.6824 L23: -1.6077 REMARK 3 S TENSOR REMARK 3 S11: 0.2135 S12: 0.1693 S13: -0.3388 REMARK 3 S21: 0.3684 S22: -0.3448 S23: -0.6469 REMARK 3 S31: 0.3707 S32: 0.5085 S33: 0.1452 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2706 15.3037 -24.0517 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2927 REMARK 3 T33: 0.2923 T12: 0.0578 REMARK 3 T13: 0.0291 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 5.7709 L22: 2.7628 REMARK 3 L33: 9.2098 L12: -0.3206 REMARK 3 L13: -0.2168 L23: -0.6107 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.1514 S13: -0.1348 REMARK 3 S21: 0.1016 S22: 0.1328 S23: 0.3318 REMARK 3 S31: -0.2950 S32: -0.6344 S33: -0.1655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3537 10.7603 -32.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2367 REMARK 3 T33: 0.1824 T12: 0.0057 REMARK 3 T13: 0.0160 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.7291 L22: 9.1250 REMARK 3 L33: 8.9592 L12: -2.8403 REMARK 3 L13: 3.5824 L23: -5.5339 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: 0.1209 S13: -0.1872 REMARK 3 S21: -0.4846 S22: -0.0585 S23: -0.0095 REMARK 3 S31: 0.4474 S32: 0.0963 S33: -0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3900 -0.1840 -25.6093 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.1602 REMARK 3 T33: 0.1514 T12: 0.0035 REMARK 3 T13: -0.0329 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 4.9863 L22: 6.0249 REMARK 3 L33: 7.0458 L12: -0.6930 REMARK 3 L13: -1.5925 L23: -1.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.1555 S12: 0.3719 S13: -0.0081 REMARK 3 S21: -0.4420 S22: 0.0107 S23: 0.1563 REMARK 3 S31: 0.4271 S32: -0.2130 S33: -0.1179 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4674 -8.7543 -16.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2817 REMARK 3 T33: 0.3242 T12: -0.0028 REMARK 3 T13: -0.0395 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 2.6283 L22: 6.8782 REMARK 3 L33: 9.1333 L12: 0.1223 REMARK 3 L13: -0.7461 L23: 3.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.1020 S13: -0.5129 REMARK 3 S21: -0.2393 S22: 0.0028 S23: 0.6199 REMARK 3 S31: 0.7661 S32: -0.4724 S33: 0.1062 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1924 -2.7550 -12.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.2040 REMARK 3 T33: 0.2374 T12: -0.0129 REMARK 3 T13: -0.0125 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 5.8867 L22: 6.8161 REMARK 3 L33: 7.7720 L12: -1.9759 REMARK 3 L13: -2.5013 L23: 2.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.5117 S13: 0.0876 REMARK 3 S21: 0.0819 S22: 0.2213 S23: -0.4713 REMARK 3 S31: -0.2021 S32: 0.4204 S33: -0.1327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5375 -0.1198 -21.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.2884 REMARK 3 T33: 0.2563 T12: 0.0113 REMARK 3 T13: 0.0203 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 6.3102 L22: 4.0660 REMARK 3 L33: 5.1282 L12: -3.2939 REMARK 3 L13: 1.4938 L23: -2.8712 REMARK 3 S TENSOR REMARK 3 S11: 0.1962 S12: 0.1533 S13: -0.0357 REMARK 3 S21: -0.3997 S22: -0.3504 S23: -0.2003 REMARK 3 S31: 0.4440 S32: 0.5631 S33: 0.2555 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6363 15.4158 -17.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.2148 REMARK 3 T33: 0.1758 T12: 0.0267 REMARK 3 T13: 0.0363 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 4.6124 L22: 4.9601 REMARK 3 L33: 3.1136 L12: -0.6892 REMARK 3 L13: 0.2446 L23: -1.8591 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.3183 S13: -0.0645 REMARK 3 S21: 0.6300 S22: 0.0180 S23: 0.0536 REMARK 3 S31: -0.2350 S32: -0.1551 S33: -0.0071 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4500 21.6373 -12.3967 REMARK 3 T TENSOR REMARK 3 T11: 0.4787 T22: 0.4124 REMARK 3 T33: 0.2105 T12: -0.0265 REMARK 3 T13: -0.0289 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 6.9660 L22: 9.2670 REMARK 3 L33: 4.8703 L12: 7.0834 REMARK 3 L13: 2.3490 L23: -0.5228 REMARK 3 S TENSOR REMARK 3 S11: 0.6203 S12: -1.5041 S13: 0.3274 REMARK 3 S21: 1.1358 S22: -0.7303 S23: 0.0304 REMARK 3 S31: 0.1939 S32: -0.2624 S33: 0.1209 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3575 22.8160 -31.4985 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.1700 REMARK 3 T33: 0.1669 T12: 0.0572 REMARK 3 T13: -0.0218 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.4971 L22: 2.2738 REMARK 3 L33: 2.8854 L12: 2.6171 REMARK 3 L13: 1.9173 L23: 0.2951 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.3921 S13: 0.2570 REMARK 3 S21: -0.2468 S22: 0.0134 S23: 0.1616 REMARK 3 S31: -0.1327 S32: -0.0808 S33: 0.0122 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1292 20.4157 -22.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.1938 REMARK 3 T33: 0.1740 T12: 0.0340 REMARK 3 T13: 0.0327 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.7013 L22: 6.1882 REMARK 3 L33: 9.6484 L12: 0.1498 REMARK 3 L13: 3.0370 L23: -1.2092 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: 0.1567 S13: 0.0822 REMARK 3 S21: 0.5628 S22: -0.1454 S23: -0.3503 REMARK 3 S31: -0.0453 S32: 0.7757 S33: -0.0816 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG2 E5 (284882E5): 1600MM AMMONIUM REMARK 280 SULFATE, 100MM MES PH6.5, 10% DIOXANE, 10MG/ML, 20% EG, PUCK REMARK 280 RFH2-6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.14000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.17500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.21000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.17500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.07000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.21000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.07000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 172 O HOH A 301 2.11 REMARK 500 OD1 ASP A 22 O HOH A 302 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 117.96 -160.15 REMARK 500 ASP A 111 -94.75 -91.16 REMARK 500 MET A 140 48.18 -87.93 REMARK 500 ASN A 186 74.21 -152.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 450 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 451 DISTANCE = 6.83 ANGSTROMS DBREF 5SD9 A 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET HZU A 202 28 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET EDO A 206 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HZU (2S)-2-[(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 HZU OXY]PROPOXY}PHENYL)METHYL]-3-FLUOROPROPANOIC ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HZU C19 H25 F N4 O4 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *151(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 THR A 101 1 9 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 ASN A 127 1 10 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 159 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 CISPEP 1 ARG A 66 PRO A 67 0 -5.47 CISPEP 2 ARG A 66 PRO A 67 0 -3.19 CISPEP 3 GLY A 117 GLY A 118 0 2.67 CRYST1 74.350 74.350 144.280 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006931 0.00000