HEADER SPLICING 26-AUG-22 5STW TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX WITH TITLE 2 FRAGMENT P03C12 FROM THE F2X-UNIVERSAL LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1836-2090; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: ATCC 204508 / S288C; SOURCE 12 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, U5 SNRNP KEYWDS 2 ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS REVDAT 3 06-NOV-24 5STW 1 REMARK REVDAT 2 30-NOV-22 5STW 1 JRNL REVDAT 1 02-NOV-22 5STW 0 JRNL AUTH T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS JRNL TITL LARGE-SCALE CRYSTALLOGRAPHIC FRAGMENT SCREENING EXPEDITES JRNL TITL 2 COMPOUND OPTIMIZATION AND IDENTIFIES PUTATIVE JRNL TITL 3 PROTEIN-PROTEIN INTERACTION SITES. JRNL REF J.MED.CHEM. V. 65 14630 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36260741 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01165 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3400 - 1.8900 0.99 0 2097 0.2826 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1833:1904) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1803 7.7886 25.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.5065 T22: 0.4659 REMARK 3 T33: 0.499 T12: -0.0245 REMARK 3 T13: 0.0502 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 1.4824 L22: 0.7409 REMARK 3 L33: 1.7139 L12: 0.3662 REMARK 3 L13: -0.2902 L23: -0.6201 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: -0.0464 S13: -0.145 REMARK 3 S21: -0.0464 S22: -0.1257 S23: -0.1374 REMARK 3 S31: -0.145 S32: -0.1374 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1905:1964) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1535 11.8345 20.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.5258 T22: 0.5382 REMARK 3 T33: 0.4313 T12: 0.0536 REMARK 3 T13: -0.0175 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 1.9996 L22: 1.5069 REMARK 3 L33: 0.8781 L12: 0.0201 REMARK 3 L13: 0.3623 L23: -0.7505 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: -0.491 S13: -0.0762 REMARK 3 S21: -0.491 S22: 0.067 S23: -0.0844 REMARK 3 S31: -0.0762 S32: -0.0844 S33: 0 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1965:2027) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9874 16.4034 35.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.5385 T22: 0.4922 REMARK 3 T33: 0.6177 T12: -0.0152 REMARK 3 T13: -0.0159 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 0.8976 L22: 0.3061 REMARK 3 L33: 2.2646 L12: -0.6367 REMARK 3 L13: -0.7649 L23: 1.118 REMARK 3 S TENSOR REMARK 3 S11: 0.2109 S12: 0.2149 S13: -0.06 REMARK 3 S21: 0.2149 S22: -0.2202 S23: 0.0861 REMARK 3 S31: -0.06 S32: 0.0861 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 2028:2069) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6976 24.6145 36.8053 REMARK 3 T TENSOR REMARK 3 T11: 0.6147 T22: 0.4644 REMARK 3 T33: 0.6246 T12: -0.1253 REMARK 3 T13: -0.0548 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.6142 L22: 0.9836 REMARK 3 L33: 0.4912 L12: 0.1451 REMARK 3 L13: 0.0537 L23: 1.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.3507 S12: 0.421 S13: -0.3338 REMARK 3 S21: 0.421 S22: -0.1753 S23: 0.6738 REMARK 3 S31: -0.3338 S32: 0.6738 S33: -0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:66) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0443 11.6741 -29.8074 REMARK 3 T TENSOR REMARK 3 T11: 0.462 T22: 0.3955 REMARK 3 T33: 0.5035 T12: -0.0331 REMARK 3 T13: -0.0795 T23: -0.067 REMARK 3 L TENSOR REMARK 3 L11: 0.5429 L22: 0.8981 REMARK 3 L33: 1.0914 L12: -1.5696 REMARK 3 L13: 0.869 L23: -0.6281 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.1003 S13: 0.2452 REMARK 3 S21: -0.1003 S22: -0.0581 S23: -0.2673 REMARK 3 S31: 0.2452 S32: -0.2673 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 67:137) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6182 7.2105 -27.9343 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.4966 REMARK 3 T33: 0.5163 T12: -0.0811 REMARK 3 T13: -0.0346 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.9226 L22: 1.4084 REMARK 3 L33: 2.9788 L12: 1.1227 REMARK 3 L13: 0.8871 L23: -0.2924 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: -0.4724 S13: 0.2297 REMARK 3 S21: -0.4724 S22: 0.0107 S23: -0.3336 REMARK 3 S31: 0.2297 S32: -0.3336 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 138:251) REMARK 3 ORIGIN FOR THE GROUP (A): 17.182 4.3823 -2.6948 REMARK 3 T TENSOR REMARK 3 T11: 0.4398 T22: 0.5763 REMARK 3 T33: 0.4123 T12: -0.0109 REMARK 3 T13: 0.0068 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.2419 L22: 0.6562 REMARK 3 L33: 2.4286 L12: -0.2585 REMARK 3 L13: 0.4246 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.242 S13: -0.0264 REMARK 3 S21: 0.242 S22: -0.01 S23: -0.3463 REMARK 3 S31: -0.0264 S32: -0.3463 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 252:317) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2985 -0.8666 -10.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.4785 T22: 0.6141 REMARK 3 T33: 0.5456 T12: 0.0088 REMARK 3 T13: 0.0211 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.7654 L22: 0.6048 REMARK 3 L33: 1.7634 L12: -0.7892 REMARK 3 L13: -0.3902 L23: 1.4042 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.2843 S13: 0.1284 REMARK 3 S21: 0.2843 S22: 0.273 S23: 0.2791 REMARK 3 S31: 0.1284 S32: 0.2791 S33: -0 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5STW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1001404958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 44.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 44.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.77 REMARK 200 R MERGE FOR SHELL (I) : 0.03500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 48.28 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG4000, 3% DMSO, 0.1 M TRIS, PH REMARK 280 8.5, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.55050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.10150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.55050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.10150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1979 N CA C O CB CG SD REMARK 480 MET A 1979 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 2049 HG SER A 2053 1.45 REMARK 500 O ARG A 1962 HH12 ARG A 2013 1.55 REMARK 500 O PHE A 1844 HZ3 LYS A 1885 1.55 REMARK 500 O TYR B 270 HG1 THR B 274 1.55 REMARK 500 O PRO B 37 HE2 HIS B 42 1.58 REMARK 500 O ARG A 1962 NH1 ARG A 2013 1.97 REMARK 500 O HOH A 2114 O HOH A 2121 2.05 REMARK 500 OD2 ASP B 111 O HOH B 501 2.13 REMARK 500 O ILE A 2049 OG SER A 2053 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 71 CD1 TYR B 71 CE1 -0.132 REMARK 500 TYR B 115 CB TYR B 115 CG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1850 CB - CG - CD2 ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU A2008 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU B 77 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 TYR B 115 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 249 CB - CG - CD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1839 53.99 -92.75 REMARK 500 THR A1896 -25.14 -32.85 REMARK 500 PHE A1951 72.10 -115.18 REMARK 500 ARG A1962 56.64 -103.30 REMARK 500 PRO A1964 30.60 -88.81 REMARK 500 ALA A1967 2.75 -66.05 REMARK 500 ASP A1993 -125.88 47.75 REMARK 500 THR A2061 -81.25 -36.60 REMARK 500 ASN A2068 75.62 48.08 REMARK 500 SER B 8 165.30 169.71 REMARK 500 ASP B 18 -127.67 44.26 REMARK 500 ASN B 51 80.47 -152.54 REMARK 500 SER B 52 -8.63 -55.41 REMARK 500 MET B 54 81.99 79.66 REMARK 500 MET B 54 84.48 70.88 REMARK 500 LYS B 132 76.04 -160.86 REMARK 500 ASN B 177 63.41 -57.77 REMARK 500 ASN B 177 63.01 -57.86 REMARK 500 LYS B 184 75.50 -104.36 REMARK 500 ILE B 213 -74.27 -106.80 REMARK 500 LYS B 215 -32.83 106.30 REMARK 500 PRO B 257 134.49 -36.96 REMARK 500 LEU B 302 66.13 -117.28 REMARK 500 LEU B 316 -7.23 -59.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 122 -16.94 REMARK 500 GLN B 122 -15.91 REMARK 500 LEU B 176 13.14 REMARK 500 LEU B 176 13.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 5STW A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 5STW B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 5STW GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 5STW ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 5STW MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 5STW GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 5STW ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 5STW MET B -1 UNP P32357 EXPRESSION TAG SEQADV 5STW ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 5STW SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 5STW SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 5STW B UNP P32357 LEU 157 DELETION SEQADV 5STW B UNP P32357 GLN 158 DELETION SEQADV 5STW B UNP P32357 LYS 159 DELETION SEQADV 5STW B UNP P32357 ALA 160 DELETION SEQADV 5STW B UNP P32357 GLY 161 DELETION SEQADV 5STW B UNP P32357 SER 162 DELETION SEQADV 5STW B UNP P32357 LYS 163 DELETION SEQADV 5STW B UNP P32357 MET 164 DELETION SEQADV 5STW B UNP P32357 GLU 165 DELETION SEQADV 5STW B UNP P32357 ALA 166 DELETION SEQADV 5STW B UNP P32357 LYS 167 DELETION SEQADV 5STW B UNP P32357 ASN 168 DELETION SEQADV 5STW B UNP P32357 GLU 169 DELETION SEQADV 5STW SER B 170 UNP P32357 ASP 170 CONFLICT SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU HET V8L B 401 11 HETNAM V8L N'-PHENYLACETOHYDRAZIDE FORMUL 3 V8L C8 H10 N2 O FORMUL 4 HOH *50(H2 O) HELIX 1 AA1 TYR A 1840 ASN A 1845 5 6 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 GLN B 100 1 16 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 ARG B 127 1 6 HELIX 17 AB8 THR B 146 GLU B 151 1 6 HELIX 18 AB9 HIS B 193 ASP B 200 1 8 HELIX 19 AC1 LYS B 201 THR B 207 1 7 HELIX 20 AC2 ASN B 216 GLY B 235 1 20 HELIX 21 AC3 ASN B 236 SER B 252 1 17 HELIX 22 AC4 PRO B 257 LEU B 275 1 19 HELIX 23 AC5 TYR B 279 LEU B 284 1 6 HELIX 24 AC6 ASN B 285 SER B 295 1 11 HELIX 25 AC7 SER B 296 SER B 301 5 6 HELIX 26 AC8 LEU B 302 TYR B 313 1 12 HELIX 27 AC9 PRO B 314 LEU B 317 5 4 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O PHE A1880 N ASP A1853 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O ILE A1894 N GLY A1877 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O GLN A1985 N ILE A1893 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ILE A1875 N ARG A1859 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 36 N ASN B 2 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 17 O TYR B 20 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O PHE B 60 N HIS B 42 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 ASN B 66 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 83 -1 O MET B 81 N TYR B 68 SSBOND 1 CYS B 251 CYS B 292 1555 1555 2.03 CRYST1 89.101 82.203 93.533 90.00 108.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011223 0.000000 0.003760 0.00000 SCALE2 0.000000 0.012165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011275 0.00000