HEADER PROTEIN BINDING 03-AUG-16 5SUI TITLE RIBOSOME ASSEMBLY FACTOR NSA1: C-TERMINAL TRUNCATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN NSA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOP7-ASSOCIATED PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NSA1, YGL111W, G2990; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSOME ASSEMBLY, RRNA PROCESSING, ATPASES ASSOCIATED WITH DIVERSE KEYWDS 2 CELLULAR ACTIVITIES (AAA), WD40 DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LO,R.E.STANLEY REVDAT 2 06-MAR-24 5SUI 1 REMARK REVDAT 1 26-APR-17 5SUI 0 JRNL AUTH Y.H.LO,R.E.STANLEY JRNL TITL RIBOSOME ASSEMBLY FACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 93271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3061 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4123 ; 2.429 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6890 ; 1.225 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 7.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;34.634 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.687 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.190 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3394 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 3.535 ; 1.858 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1523 ; 3.481 ; 1.857 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1898 ; 3.851 ; 2.782 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6050 ; 6.123 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 93 ;24.874 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6343 ;12.597 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5SUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 59.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.1%(V/V) PEG 1500, 13.4%(V/V) PEG REMARK 280 400, 0.1M HEPES/ SODIUM HYDROXIDE PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.16350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.68550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.68550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.16350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.52600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ASN A 84 REMARK 465 GLU A 85 REMARK 465 ALA A 86 REMARK 465 LEU A 87 REMARK 465 GLN A 88 REMARK 465 VAL A 89 REMARK 465 ASP A 90 REMARK 465 PRO A 91 REMARK 465 LYS A 92 REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 SER A 95 REMARK 465 LYS A 96 REMARK 465 ASN A 97 REMARK 465 GLU A 98 REMARK 465 LYS A 99 REMARK 465 SER A 100 REMARK 465 LEU A 101 REMARK 465 SER A 102 REMARK 465 ASP A 103 REMARK 465 ASP A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 129 REMARK 465 SER A 130 REMARK 465 LEU A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 LYS A 134 REMARK 465 SER A 135 REMARK 465 VAL A 136 REMARK 465 LYS A 137 REMARK 465 ARG A 138 REMARK 465 THR A 139 REMARK 465 LYS A 140 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 MET A 422 REMARK 465 PRO A 423 REMARK 465 LEU A 424 REMARK 465 SER A 425 REMARK 465 PRO A 426 REMARK 465 SER A 427 REMARK 465 ALA A 428 REMARK 465 LYS A 429 REMARK 465 ALA A 430 REMARK 465 ALA A 431 REMARK 465 LYS A 432 REMARK 465 GLY A 433 REMARK 465 LYS A 434 REMARK 465 GLN A 435 REMARK 465 LYS A 436 REMARK 465 ARG A 437 REMARK 465 LYS A 438 REMARK 465 VAL A 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 32 CB CG CD OE1 NE2 REMARK 470 SER A 33 CB OG REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LEU A 128 CG CD1 CD2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 SER A 156 OG REMARK 470 ASP A 204 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 572 O HOH A 665 1.93 REMARK 500 O HOH A 766 O HOH A 835 2.08 REMARK 500 O HOH A 515 O HOH A 788 2.09 REMARK 500 O HOH A 555 O HOH A 806 2.10 REMARK 500 NE ARG A 280 O HOH A 501 2.15 REMARK 500 O HOH A 530 O HOH A 695 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 4 N GLY A 4 CA 0.113 REMARK 500 GLY A 4 C GLY A 4 O 0.238 REMARK 500 ASP A 14 CG ASP A 14 OD2 -0.155 REMARK 500 GLU A 112 CG GLU A 112 CD 0.094 REMARK 500 GLU A 112 CD GLU A 112 OE1 0.125 REMARK 500 LYS A 152 N LYS A 152 CA 0.177 REMARK 500 LYS A 152 CA LYS A 152 CB 0.171 REMARK 500 LYS A 152 CA LYS A 152 C 0.164 REMARK 500 VAL A 161 CB VAL A 161 CG2 -0.155 REMARK 500 GLU A 201 CB GLU A 201 CG 0.117 REMARK 500 GLU A 201 CG GLU A 201 CD 0.133 REMARK 500 GLU A 201 CD GLU A 201 OE1 0.121 REMARK 500 GLU A 201 CD GLU A 201 OE2 0.144 REMARK 500 GLU A 201 C GLU A 201 O 0.149 REMARK 500 GLU A 223 CD GLU A 223 OE1 0.117 REMARK 500 ARG A 257 NE ARG A 257 CZ -0.083 REMARK 500 GLY A 269 CA GLY A 269 C -0.101 REMARK 500 ARG A 280 NE ARG A 280 CZ -0.093 REMARK 500 ARG A 280 CZ ARG A 280 NH2 0.142 REMARK 500 GLU A 319 CD GLU A 319 OE1 0.068 REMARK 500 SER A 324 CA SER A 324 CB 0.095 REMARK 500 SER A 324 CB SER A 324 OG -0.109 REMARK 500 GLU A 335 CD GLU A 335 OE1 0.131 REMARK 500 GLU A 335 CD GLU A 335 OE2 -0.106 REMARK 500 TYR A 388 CZ TYR A 388 CE2 -0.111 REMARK 500 VAL A 389 CB VAL A 389 CG2 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 4 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 ASP A 14 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 PHE A 38 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 LEU A 48 CB - CG - CD2 ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET A 55 CG - SD - CE ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 LYS A 152 C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 LYS A 152 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 GLU A 201 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU A 201 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ASP A 202 CB - CG - OD2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 206 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 GLU A 223 OE1 - CD - OE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 243 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 247 CG - SD - CE ANGL. DEV. = -20.7 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 258 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 LYS A 268 CD - CE - NZ ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 280 NH1 - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 305 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 332 CA - CB - CG2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS A 395 CD - CE - NZ ANGL. DEV. = 19.3 DEGREES REMARK 500 ASP A 417 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -158.68 -126.14 REMARK 500 GLU A 201 -66.48 -97.40 REMARK 500 ASP A 202 -169.07 -160.51 REMARK 500 ASP A 206 5.45 54.52 REMARK 500 TRP A 252 70.31 -161.43 REMARK 500 GLN A 310 154.60 79.25 REMARK 500 LYS A 344 -65.40 -104.96 REMARK 500 LYS A 345 -2.53 -178.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 14 0.10 SIDE CHAIN REMARK 500 ARG A 387 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 207 -11.05 REMARK 500 GLU A 267 -11.18 REMARK 500 LYS A 268 -13.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 939 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 6.17 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SUM RELATED DB: PDB DBREF 5SUI A 6 439 UNP P53136 NSA1_YEAST 1 434 SEQADV 5SUI GLY A 1 UNP P53136 EXPRESSION TAG SEQADV 5SUI ALA A 2 UNP P53136 EXPRESSION TAG SEQADV 5SUI MET A 3 UNP P53136 EXPRESSION TAG SEQADV 5SUI GLY A 4 UNP P53136 EXPRESSION TAG SEQADV 5SUI SER A 5 UNP P53136 EXPRESSION TAG SEQRES 1 A 439 GLY ALA MET GLY SER MET ARG LEU LEU VAL SER CYS VAL SEQRES 2 A 439 ASP SER GLY SER ILE LYS GLU VAL LEU CYS ASN ILE GLY SEQRES 3 A 439 THR ASP THR SER VAL GLN SER ALA LEU GLN PRO PHE HIS SEQRES 4 A 439 VAL ALA PRO HIS LEU ALA GLU GLY LEU LYS ALA TYR VAL SEQRES 5 A 439 ASP ARG MET TRP VAL ILE SER GLU ASP GLU ALA ILE LEU SEQRES 6 A 439 ALA ARG ASN SER GLY VAL VAL GLU LEU VAL LYS ILE SER SEQRES 7 A 439 LYS HIS LEU LYS GLU ASN GLU ALA LEU GLN VAL ASP PRO SEQRES 8 A 439 LYS GLY GLU SER LYS ASN GLU LYS SER LEU SER ASP ASP SEQRES 9 A 439 LEU PRO LYS PHE ASP ILE SER GLU PHE GLU ILE THR SER SEQRES 10 A 439 SER VAL SER ASP LEU PHE ASP ASP ALA LYS LEU GLU SER SEQRES 11 A 439 LEU SER SER LYS SER VAL LYS ARG THR LYS LEU VAL ASP SEQRES 12 A 439 GLY PHE VAL THR LEU CYS PRO ILE LYS LYS ASP SER SER SEQRES 13 A 439 ASN ASN THR PHE VAL ALA ALA THR LYS SER GLY LEU LEU SEQRES 14 A 439 HIS ILE ILE LYS LYS GLY GLU ASP LYS LYS LEU ILE LYS SEQRES 15 A 439 LEU ALA SER LEU GLY LEU LYS ALA PRO VAL GLU PHE LEU SEQRES 16 A 439 GLN LEU TYR ASP LEU GLU ASP THR ASP THR ASP LYS TYR SEQRES 17 A 439 ILE PHE ALA TYR GLY GLY GLU GLU ASN LEU ILE LYS LEU SEQRES 18 A 439 VAL GLU ILE ASP SER SER PHE GLN SER LEU LYS GLN ILE SEQRES 19 A 439 TRP GLU ALA LYS ASN VAL LYS ASN ASP ARG LEU ASP MET SEQRES 20 A 439 ARG VAL PRO VAL TRP PRO MET ALA LEU ARG PHE LEU GLU SEQRES 21 A 439 PRO SER PRO GLY LYS THR GLU LYS GLY LYS LEU ASN TYR SEQRES 22 A 439 GLN PHE ALA ALA ILE THR ARG TRP SER HIS LEU THR LYS SEQRES 23 A 439 TYR SER THR GLN HIS GLY ARG LYS PRO PHE ALA GLN ILE SEQRES 24 A 439 ASP LEU LEU PRO ASN ARG GLU PRO LEU SER GLN MET GLU SEQRES 25 A 439 VAL PHE ASP ALA LYS GLY GLU ASN VAL VAL SER SER LEU SEQRES 26 A 439 GLY ASN PHE GLN SER GLU THR PHE ASN GLU LEU ASN VAL SEQRES 27 A 439 ILE THR THR ASP TYR LYS LYS ASN VAL PHE LYS PHE ASP SEQRES 28 A 439 GLY ASN GLY ARG MET LEU GLY LYS VAL GLY ARG ASP ASP SEQRES 29 A 439 ILE THR GLY SER SER THR TYR ILE HIS VAL HIS ASP GLY SEQRES 30 A 439 LYS TYR LEU LEU GLN GLY GLY LEU ASP ARG TYR VAL ARG SEQRES 31 A 439 ILE PHE ASP ILE LYS THR ASN LYS MET LEU VAL LYS VAL SEQRES 32 A 439 TYR VAL GLY SER ARG ILE ASN PHE ILE VAL MET LEU ASP SEQRES 33 A 439 ASP VAL GLU ILE GLU MET PRO LEU SER PRO SER ALA LYS SEQRES 34 A 439 ALA ALA LYS GLY LYS GLN LYS ARG LYS VAL FORMUL 2 HOH *440(H2 O) HELIX 1 AA1 ASP A 14 GLY A 16 5 3 HELIX 2 AA2 GLY A 47 ALA A 50 5 4 HELIX 3 AA3 LEU A 302 GLU A 306 5 5 HELIX 4 AA4 THR A 332 GLU A 335 5 4 SHEET 1 AA1 4 HIS A 39 HIS A 43 0 SHEET 2 AA1 4 SER A 17 CYS A 23 -1 N LEU A 22 O HIS A 39 SHEET 3 AA1 4 MET A 6 CYS A 12 -1 N LEU A 8 O VAL A 21 SHEET 4 AA1 4 ILE A 409 MET A 414 -1 O PHE A 411 N SER A 11 SHEET 1 AA2 5 THR A 27 ASP A 28 0 SHEET 2 AA2 5 MET A 399 TYR A 404 1 O LYS A 402 N THR A 27 SHEET 3 AA2 5 TYR A 388 ASP A 393 -1 N ILE A 391 O LEU A 400 SHEET 4 AA2 5 TYR A 379 GLY A 383 -1 N GLN A 382 O ARG A 390 SHEET 5 AA2 5 TYR A 371 HIS A 375 -1 N HIS A 373 O LEU A 381 SHEET 1 AA3 5 VAL A 52 SER A 59 0 SHEET 2 AA3 5 GLU A 62 ARG A 67 -1 O ALA A 66 N ASP A 53 SHEET 3 AA3 5 VAL A 71 LEU A 81 -1 O VAL A 71 N ARG A 67 SHEET 4 AA3 5 LYS A 107 VAL A 119 -1 O ILE A 110 N HIS A 80 SHEET 5 AA3 5 ILE A 420 GLU A 421 -1 O GLU A 421 N LYS A 107 SHEET 1 AA4 4 PHE A 145 PRO A 150 0 SHEET 2 AA4 4 THR A 159 THR A 164 -1 O VAL A 161 N CYS A 149 SHEET 3 AA4 4 LEU A 168 LYS A 174 -1 O ILE A 172 N PHE A 160 SHEET 4 AA4 4 LEU A 180 GLY A 187 -1 O LEU A 183 N ILE A 171 SHEET 1 AA5 4 PHE A 194 LEU A 197 0 SHEET 2 AA5 4 TYR A 208 GLY A 214 -1 O ALA A 211 N GLN A 196 SHEET 3 AA5 4 ASN A 217 ILE A 224 -1 O VAL A 222 N PHE A 210 SHEET 4 AA5 4 LEU A 231 GLU A 236 -1 O LYS A 232 N GLU A 223 SHEET 1 AA6 4 PRO A 253 LEU A 259 0 SHEET 2 AA6 4 GLN A 274 THR A 279 -1 O ILE A 278 N MET A 254 SHEET 3 AA6 4 HIS A 283 SER A 288 -1 O TYR A 287 N PHE A 275 SHEET 4 AA6 4 ALA A 297 ASP A 300 -1 O ILE A 299 N LEU A 284 SHEET 1 AA7 4 LEU A 308 VAL A 313 0 SHEET 2 AA7 4 ASN A 337 ASP A 342 -1 O ILE A 339 N GLU A 312 SHEET 3 AA7 4 VAL A 347 ASP A 351 -1 O PHE A 350 N VAL A 338 SHEET 4 AA7 4 MET A 356 LYS A 359 -1 O LEU A 357 N LYS A 349 CISPEP 1 GLY A 4 SER A 5 0 1.44 CISPEP 2 LYS A 127 LEU A 128 0 13.38 CISPEP 3 ILE A 151 LYS A 152 0 14.27 CISPEP 4 ALA A 190 PRO A 191 0 -4.49 CRYST1 54.327 81.052 87.371 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011445 0.00000