HEADER OXIDOREDUCTASE 03-AUG-16 5SUN TITLE IDH1 R132H IN COMPLEX WITH IDH146 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IDH,CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE,IDP,NADP(+)- COMPND 5 SPECIFIC ICDH,OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, ISOCITRATE DEHYDROGENASE, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.XIE,R.KULATHILA REVDAT 3 06-MAR-24 5SUN 1 REMARK REVDAT 2 22-MAR-17 5SUN 1 JRNL REVDAT 1 08-FEB-17 5SUN 0 JRNL AUTH X.XIE,D.BAIRD,K.BOWEN,V.CAPKA,J.CHEN,G.CHENAIL,Y.CHO, JRNL AUTH 2 J.DOOLEY,A.FARSIDJANI,P.FORTIN,D.KOHLS,R.KULATHILA,F.LIN, JRNL AUTH 3 D.MCKAY,L.RODRIGUES,D.SAGE,B.B.TOURE,S.VAN DER PLAS, JRNL AUTH 4 K.WRIGHT,M.XU,H.YIN,J.LEVELL,R.A.PAGLIARINI JRNL TITL ALLOSTERIC MUTANT IDH1 INHIBITORS REVEAL MECHANISMS FOR IDH1 JRNL TITL 2 MUTANT AND ISOFORM SELECTIVITY. JRNL REF STRUCTURE V. 25 506 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28132785 JRNL DOI 10.1016/J.STR.2016.12.017 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.5028 - 5.9677 1.00 2881 126 0.1906 0.2091 REMARK 3 2 5.9677 - 4.7370 1.00 2694 145 0.1816 0.1987 REMARK 3 3 4.7370 - 4.1383 1.00 2630 146 0.1572 0.1855 REMARK 3 4 4.1383 - 3.7599 1.00 2603 148 0.1738 0.1954 REMARK 3 5 3.7599 - 3.4904 1.00 2639 124 0.1882 0.2199 REMARK 3 6 3.4904 - 3.2847 1.00 2581 147 0.1949 0.2405 REMARK 3 7 3.2847 - 3.1202 1.00 2578 142 0.2027 0.2301 REMARK 3 8 3.1202 - 2.9843 1.00 2576 130 0.2246 0.2595 REMARK 3 9 2.9843 - 2.8694 1.00 2574 136 0.2257 0.2798 REMARK 3 10 2.8694 - 2.7704 1.00 2550 131 0.2172 0.2937 REMARK 3 11 2.7704 - 2.6838 1.00 2558 138 0.2128 0.2625 REMARK 3 12 2.6838 - 2.6071 1.00 2562 137 0.2176 0.2618 REMARK 3 13 2.6071 - 2.5384 1.00 2533 144 0.2350 0.3052 REMARK 3 14 2.5384 - 2.4765 1.00 2566 131 0.2423 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6500 REMARK 3 ANGLE : 0.662 8779 REMARK 3 CHIRALITY : 0.046 948 REMARK 3 PLANARITY : 0.003 1094 REMARK 3 DIHEDRAL : 19.361 3843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.477 REMARK 200 RESOLUTION RANGE LOW (A) : 72.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG3350, 0.22M LITHIUM SULFATE, PH REMARK 280 7.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.27500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.28150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.28150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 226.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.28150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.63750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.28150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 226.91250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.28150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.28150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.63750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 151.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 133 REMARK 465 ALA A 134 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 GLN A 138 REMARK 465 TYR A 139 REMARK 465 ARG A 140 REMARK 465 TYR A 272 REMARK 465 ASP A 273 REMARK 465 GLY A 274 REMARK 465 ASP A 275 REMARK 465 VAL A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 VAL A 281 REMARK 465 ALA A 282 REMARK 465 GLN A 283 REMARK 465 GLY A 284 REMARK 465 TYR A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 414 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TYR B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 GLN B 138 REMARK 465 TYR B 139 REMARK 465 TYR B 272 REMARK 465 ASP B 273 REMARK 465 GLY B 274 REMARK 465 ASP B 275 REMARK 465 VAL B 276 REMARK 465 GLN B 277 REMARK 465 SER B 278 REMARK 465 ASP B 279 REMARK 465 SER B 280 REMARK 465 VAL B 281 REMARK 465 ALA B 282 REMARK 465 GLN B 283 REMARK 465 GLY B 284 REMARK 465 TYR B 285 REMARK 465 GLY B 286 REMARK 465 LYS B 413 REMARK 465 LEU B 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 119 CD ARG A 119 NE -0.135 REMARK 500 ARG A 119 NE ARG A 119 CZ -0.125 REMARK 500 ARG A 119 CZ ARG A 119 NH1 -0.126 REMARK 500 ARG A 119 CZ ARG A 119 NH2 -0.109 REMARK 500 GLU A 240 CD GLU A 240 OE1 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -131.29 57.72 REMARK 500 ILE A 31 -63.51 -103.24 REMARK 500 ASN A 68 -18.61 78.29 REMARK 500 ARG A 119 -166.73 -103.37 REMARK 500 HIS A 170 146.63 -172.85 REMARK 500 ASN A 213 0.76 -66.31 REMARK 500 LEU A 216 77.06 -100.47 REMARK 500 GLU B 17 -134.98 59.35 REMARK 500 ILE B 31 -63.12 -100.79 REMARK 500 ASN B 68 -7.15 75.48 REMARK 500 ASP B 79 -165.51 -126.89 REMARK 500 HIS B 170 144.28 -171.35 REMARK 500 LYS B 212 55.75 -117.51 REMARK 500 GLN B 234 -15.99 -147.49 REMARK 500 GLN B 411 47.04 -78.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 70Q A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 70Q B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SVN RELATED DB: PDB REMARK 900 RELATED ID: 5SVO RELATED DB: PDB REMARK 900 RELATED ID: 5SVF RELATED DB: PDB DBREF 5SUN A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 5SUN B 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 5SUN GLY A -2 UNP O75874 EXPRESSION TAG SEQADV 5SUN PRO A -1 UNP O75874 EXPRESSION TAG SEQADV 5SUN GLY A 0 UNP O75874 EXPRESSION TAG SEQADV 5SUN HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 5SUN GLY B -2 UNP O75874 EXPRESSION TAG SEQADV 5SUN PRO B -1 UNP O75874 EXPRESSION TAG SEQADV 5SUN GLY B 0 UNP O75874 EXPRESSION TAG SEQADV 5SUN HIS B 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQRES 1 A 417 GLY PRO GLY MET SER LYS LYS ILE SER GLY GLY SER VAL SEQRES 2 A 417 VAL GLU MET GLN GLY ASP GLU MET THR ARG ILE ILE TRP SEQRES 3 A 417 GLU LEU ILE LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU SEQRES 4 A 417 LEU ASP LEU HIS SER TYR ASP LEU GLY ILE GLU ASN ARG SEQRES 5 A 417 ASP ALA THR ASN ASP GLN VAL THR LYS ASP ALA ALA GLU SEQRES 6 A 417 ALA ILE LYS LYS HIS ASN VAL GLY VAL LYS CYS ALA THR SEQRES 7 A 417 ILE THR PRO ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU SEQRES 8 A 417 LYS GLN MET TRP LYS SER PRO ASN GLY THR ILE ARG ASN SEQRES 9 A 417 ILE LEU GLY GLY THR VAL PHE ARG GLU ALA ILE ILE CYS SEQRES 10 A 417 LYS ASN ILE PRO ARG LEU VAL SER GLY TRP VAL LYS PRO SEQRES 11 A 417 ILE ILE ILE GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG SEQRES 12 A 417 ALA THR ASP PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU SEQRES 13 A 417 ILE THR TYR THR PRO SER ASP GLY THR GLN LYS VAL THR SEQRES 14 A 417 TYR LEU VAL HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA SEQRES 15 A 417 MET GLY MET TYR ASN GLN ASP LYS SER ILE GLU ASP PHE SEQRES 16 A 417 ALA HIS SER SER PHE GLN MET ALA LEU SER LYS GLY TRP SEQRES 17 A 417 PRO LEU TYR LEU SER THR LYS ASN THR ILE LEU LYS LYS SEQRES 18 A 417 TYR ASP GLY ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR SEQRES 19 A 417 ASP LYS GLN TYR LYS SER GLN PHE GLU ALA GLN LYS ILE SEQRES 20 A 417 TRP TYR GLU HIS ARG LEU ILE ASP ASP MET VAL ALA GLN SEQRES 21 A 417 ALA MET LYS SER GLU GLY GLY PHE ILE TRP ALA CYS LYS SEQRES 22 A 417 ASN TYR ASP GLY ASP VAL GLN SER ASP SER VAL ALA GLN SEQRES 23 A 417 GLY TYR GLY SER LEU GLY MET MET THR SER VAL LEU VAL SEQRES 24 A 417 CYS PRO ASP GLY LYS THR VAL GLU ALA GLU ALA ALA HIS SEQRES 25 A 417 GLY THR VAL THR ARG HIS TYR ARG MET TYR GLN LYS GLY SEQRES 26 A 417 GLN GLU THR SER THR ASN PRO ILE ALA SER ILE PHE ALA SEQRES 27 A 417 TRP THR ARG GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN SEQRES 28 A 417 ASN LYS GLU LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU SEQRES 29 A 417 VAL SER ILE GLU THR ILE GLU ALA GLY PHE MET THR LYS SEQRES 30 A 417 ASP LEU ALA ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN SEQRES 31 A 417 ARG SER ASP TYR LEU ASN THR PHE GLU PHE MET ASP LYS SEQRES 32 A 417 LEU GLY GLU ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS SEQRES 33 A 417 LEU SEQRES 1 B 417 GLY PRO GLY MET SER LYS LYS ILE SER GLY GLY SER VAL SEQRES 2 B 417 VAL GLU MET GLN GLY ASP GLU MET THR ARG ILE ILE TRP SEQRES 3 B 417 GLU LEU ILE LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU SEQRES 4 B 417 LEU ASP LEU HIS SER TYR ASP LEU GLY ILE GLU ASN ARG SEQRES 5 B 417 ASP ALA THR ASN ASP GLN VAL THR LYS ASP ALA ALA GLU SEQRES 6 B 417 ALA ILE LYS LYS HIS ASN VAL GLY VAL LYS CYS ALA THR SEQRES 7 B 417 ILE THR PRO ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU SEQRES 8 B 417 LYS GLN MET TRP LYS SER PRO ASN GLY THR ILE ARG ASN SEQRES 9 B 417 ILE LEU GLY GLY THR VAL PHE ARG GLU ALA ILE ILE CYS SEQRES 10 B 417 LYS ASN ILE PRO ARG LEU VAL SER GLY TRP VAL LYS PRO SEQRES 11 B 417 ILE ILE ILE GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG SEQRES 12 B 417 ALA THR ASP PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU SEQRES 13 B 417 ILE THR TYR THR PRO SER ASP GLY THR GLN LYS VAL THR SEQRES 14 B 417 TYR LEU VAL HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA SEQRES 15 B 417 MET GLY MET TYR ASN GLN ASP LYS SER ILE GLU ASP PHE SEQRES 16 B 417 ALA HIS SER SER PHE GLN MET ALA LEU SER LYS GLY TRP SEQRES 17 B 417 PRO LEU TYR LEU SER THR LYS ASN THR ILE LEU LYS LYS SEQRES 18 B 417 TYR ASP GLY ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR SEQRES 19 B 417 ASP LYS GLN TYR LYS SER GLN PHE GLU ALA GLN LYS ILE SEQRES 20 B 417 TRP TYR GLU HIS ARG LEU ILE ASP ASP MET VAL ALA GLN SEQRES 21 B 417 ALA MET LYS SER GLU GLY GLY PHE ILE TRP ALA CYS LYS SEQRES 22 B 417 ASN TYR ASP GLY ASP VAL GLN SER ASP SER VAL ALA GLN SEQRES 23 B 417 GLY TYR GLY SER LEU GLY MET MET THR SER VAL LEU VAL SEQRES 24 B 417 CYS PRO ASP GLY LYS THR VAL GLU ALA GLU ALA ALA HIS SEQRES 25 B 417 GLY THR VAL THR ARG HIS TYR ARG MET TYR GLN LYS GLY SEQRES 26 B 417 GLN GLU THR SER THR ASN PRO ILE ALA SER ILE PHE ALA SEQRES 27 B 417 TRP THR ARG GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN SEQRES 28 B 417 ASN LYS GLU LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU SEQRES 29 B 417 VAL SER ILE GLU THR ILE GLU ALA GLY PHE MET THR LYS SEQRES 30 B 417 ASP LEU ALA ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN SEQRES 31 B 417 ARG SER ASP TYR LEU ASN THR PHE GLU PHE MET ASP LYS SEQRES 32 B 417 LEU GLY GLU ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS SEQRES 33 B 417 LEU HET NDP A 501 48 HET 70Q A 502 33 HET SO4 A 503 5 HET SO4 A 504 5 HET EDO A 505 4 HET DMS A 506 4 HET NDP B 501 48 HET 70Q B 502 33 HET SO4 B 503 5 HET SO4 B 504 5 HET EDO B 505 4 HET DMS B 506 4 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM 70Q 3-BENZYL-N-[3-(DIMETHYLSULFAMOYL)PHENYL]-4-OXO-3,4- HETNAM 2 70Q DIHYDROPHTHALAZINE-1-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 70Q 2(C24 H22 N4 O4 S) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 15 HOH *80(H2 O) HELIX 1 AA1 ASP A 16 LEU A 30 1 15 HELIX 2 AA2 GLY A 45 THR A 52 1 8 HELIX 3 AA3 ASP A 54 ASN A 68 1 15 HELIX 4 AA4 ASP A 79 LYS A 87 1 9 HELIX 5 AA5 SER A 94 GLY A 104 1 11 HELIX 6 AA6 ASP A 186 GLY A 204 1 19 HELIX 7 AA7 LYS A 218 TYR A 235 1 18 HELIX 8 AA8 TYR A 235 GLU A 240 1 6 HELIX 9 AA9 ALA A 241 LYS A 243 5 3 HELIX 10 AB1 ILE A 251 LYS A 260 1 10 HELIX 11 AB2 SER A 287 GLY A 289 5 3 HELIX 12 AB3 VAL A 312 LYS A 321 1 10 HELIX 13 AB4 PRO A 329 ASN A 348 1 20 HELIX 14 AB5 ASN A 349 ALA A 369 1 21 HELIX 15 AB6 THR A 373 GLY A 382 1 10 HELIX 16 AB7 LEU A 383 VAL A 386 5 4 HELIX 17 AB8 GLN A 387 TYR A 391 5 5 HELIX 18 AB9 ASN A 393 LYS A 413 1 21 HELIX 19 AC1 ASP B 16 LEU B 30 1 15 HELIX 20 AC2 GLY B 45 THR B 52 1 8 HELIX 21 AC3 ASP B 54 ASN B 68 1 15 HELIX 22 AC4 ASP B 79 PHE B 86 1 8 HELIX 23 AC5 SER B 94 GLY B 104 1 11 HELIX 24 AC6 ASP B 186 GLY B 204 1 19 HELIX 25 AC7 LYS B 218 TYR B 235 1 18 HELIX 26 AC8 TYR B 235 GLN B 242 1 8 HELIX 27 AC9 ILE B 251 LYS B 260 1 10 HELIX 28 AD1 SER B 287 GLY B 289 5 3 HELIX 29 AD2 VAL B 312 LYS B 321 1 10 HELIX 30 AD3 PRO B 329 ASN B 348 1 20 HELIX 31 AD4 ASN B 349 ALA B 369 1 21 HELIX 32 AD5 THR B 373 GLY B 382 1 10 HELIX 33 AD6 LEU B 383 VAL B 386 5 4 HELIX 34 AD7 GLN B 387 TYR B 391 5 5 HELIX 35 AD8 ASN B 393 GLN B 411 1 19 SHEET 1 AA110 VAL A 35 ASP A 43 0 SHEET 2 AA110 ILE A 5 GLN A 14 1 N ILE A 5 O GLU A 36 SHEET 3 AA110 VAL A 69 LYS A 72 1 O VAL A 69 N VAL A 11 SHEET 4 AA110 VAL A 303 ALA A 307 1 O ALA A 305 N GLY A 70 SHEET 5 AA110 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 AA110 THR A 106 ALA A 111 -1 N THR A 106 O VAL A 296 SHEET 7 AA110 ILE A 129 GLY A 131 -1 O ILE A 130 N ARG A 109 SHEET 8 AA110 ILE A 266 CYS A 269 1 O TRP A 267 N ILE A 129 SHEET 9 AA110 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 AA110 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 AA2 4 THR A 142 VAL A 146 0 SHEET 2 AA2 4 GLY A 177 GLN A 185 -1 O GLY A 177 N VAL A 146 SHEET 3 AA2 4 GLY B 177 GLN B 185 -1 O MET B 180 N MET A 182 SHEET 4 AA2 4 ALA B 141 VAL B 146 -1 N THR B 142 O GLY B 181 SHEET 1 AA3 4 VAL A 165 PHE A 172 0 SHEET 2 AA3 4 GLY A 150 PRO A 158 -1 N ILE A 154 O TYR A 167 SHEET 3 AA3 4 GLY B 150 PRO B 158 -1 O THR B 155 N GLU A 153 SHEET 4 AA3 4 VAL B 165 PHE B 172 -1 O TYR B 167 N ILE B 154 SHEET 1 AA410 VAL B 35 ASP B 43 0 SHEET 2 AA410 ILE B 5 GLN B 14 1 N ILE B 5 O GLU B 36 SHEET 3 AA410 VAL B 69 LYS B 72 1 O VAL B 69 N VAL B 11 SHEET 4 AA410 VAL B 303 ALA B 307 1 O ALA B 305 N GLY B 70 SHEET 5 AA410 MET B 291 VAL B 296 -1 N LEU B 295 O GLU B 304 SHEET 6 AA410 THR B 106 ALA B 111 -1 N PHE B 108 O VAL B 294 SHEET 7 AA410 ILE B 129 HIS B 133 -1 O HIS B 132 N VAL B 107 SHEET 8 AA410 ILE B 266 CYS B 269 1 O TRP B 267 N ILE B 129 SHEET 9 AA410 LEU B 207 THR B 211 1 N TYR B 208 O ALA B 268 SHEET 10 AA410 TYR B 246 LEU B 250 1 O ARG B 249 N LEU B 209 SITE 1 AC1 17 LYS A 72 THR A 75 ILE A 76 THR A 77 SITE 2 AC1 17 ARG A 82 ASN A 96 GLU A 306 HIS A 309 SITE 3 AC1 17 GLY A 310 THR A 311 VAL A 312 THR A 313 SITE 4 AC1 17 ARG A 314 HIS A 315 THR A 327 ASN A 328 SITE 5 AC1 17 HOH A 619 SITE 1 AC2 10 ARG A 109 ALA A 111 TRP A 124 LYS A 126 SITE 2 AC2 10 ILE A 128 ILE A 130 ALA A 258 GLY A 263 SITE 3 AC2 10 TRP A 267 70Q B 502 SITE 1 AC3 5 HIS A 170 PHE A 172 GLU A 173 GLU A 174 SITE 2 AC3 5 GLN B 185 SITE 1 AC4 4 GLU A 324 THR A 325 ASN A 393 PHE A 395 SITE 1 AC5 2 LYS A 374 HOH A 608 SITE 1 AC6 3 THR A 77 SER A 94 ASN A 96 SITE 1 AC7 18 LYS A 260 LYS B 72 THR B 75 THR B 77 SITE 2 AC7 18 ARG B 82 ASN B 96 HIS B 309 GLY B 310 SITE 3 AC7 18 THR B 311 VAL B 312 THR B 313 ARG B 314 SITE 4 AC7 18 HIS B 315 THR B 327 ASN B 328 HOH B 601 SITE 5 AC7 18 HOH B 606 HOH B 612 SITE 1 AC8 10 70Q A 502 ARG B 109 ILE B 113 TRP B 124 SITE 2 AC8 10 LYS B 126 ILE B 128 VAL B 255 ALA B 258 SITE 3 AC8 10 MET B 259 GLY B 263 SITE 1 AC9 5 GLN A 185 HIS B 170 PHE B 172 GLU B 173 SITE 2 AC9 5 GLU B 174 SITE 1 AD1 4 LYS B 151 GLU B 153 GLY B 161 GLN B 163 SITE 1 AD2 4 GLN A 411 TYR B 319 GLY B 322 GLN B 323 SITE 1 AD3 4 THR B 77 SER B 94 ASN B 96 HOH B 602 CRYST1 82.563 82.563 302.550 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012112 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003305 0.00000