HEADER PROTEIN BINDING 03-AUG-16 5SUO TITLE CRYSTAL STRUCTURE OF N-GLYCAN TRANSPORT SOLUTE BINDING PROTEIN (NGTS) TITLE 2 FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SOLUTE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: ERS020541_01426, ERS558328_01721; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SOLUTE BINDING PROTEIN, ALPHA/BETA DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.ROBB,A.B.BORASTON REVDAT 5 06-MAR-24 5SUO 1 REMARK REVDAT 4 08-JAN-20 5SUO 1 REMARK REVDAT 3 20-SEP-17 5SUO 1 REMARK REVDAT 2 18-JAN-17 5SUO 1 JRNL REVDAT 1 14-DEC-16 5SUO 0 JRNL AUTH M.ROBB,J.K.HOBBS,S.A.WOODIGA,S.SHAPIRO-WARD,M.D.SUITS, JRNL AUTH 2 N.MCGREGOR,H.BRUMER,H.YESILKAYA,S.J.KING,A.B.BORASTON JRNL TITL MOLECULAR CHARACTERIZATION OF N-GLYCAN DEGRADATION AND JRNL TITL 2 TRANSPORT IN STREPTOCOCCUS PNEUMONIAE AND ITS CONTRIBUTION JRNL TITL 3 TO VIRULENCE. JRNL REF PLOS PATHOG. V. 13 06090 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28056108 JRNL DOI 10.1371/JOURNAL.PPAT.1006090 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.504 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3561 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4834 ; 1.418 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;38.726 ;26.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;15.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2697 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1804 ; 1.101 ; 1.963 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2252 ; 1.865 ; 2.936 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1757 ; 1.268 ; 2.021 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5SUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25262 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 92.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29 % PEG 1500, 11 % 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 VAL A 218 CG1 CG2 REMARK 470 ASN A 220 CG OD1 ND2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 ASN A 327 CG OD1 ND2 REMARK 470 ASN A 328 CG OD1 ND2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ASN A 439 CG OD1 ND2 REMARK 470 GLN A 442 CG CD OE1 NE2 REMARK 470 GLN A 443 CG CD OE1 NE2 REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 470 LYS A 474 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 370 O HOH A 601 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 759 O HOH A 809 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -70.03 -128.27 REMARK 500 ALA A 154 -111.33 -151.51 REMARK 500 ASN A 165 98.09 -69.96 REMARK 500 ASP A 272 123.99 -39.78 REMARK 500 ASN A 328 68.20 -105.45 REMARK 500 ASN A 390 102.32 -28.35 REMARK 500 LYS A 490 -62.46 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 521 DBREF1 5SUO A 40 491 UNP A0A0T7JX40_STREE DBREF2 5SUO A A0A0T7JX40 40 491 SEQRES 1 A 452 LYS PRO VAL ILE LYS MET TYR GLN ILE GLY ASP LYS PRO SEQRES 2 A 452 ASP ASN LEU ASP GLU LEU LEU ALA ASN ALA ASN LYS ILE SEQRES 3 A 452 ILE GLU GLU LYS VAL GLY ALA LYS LEU ASP ILE GLN TYR SEQRES 4 A 452 LEU GLY TRP GLY ASP TYR GLY LYS LYS MET SER VAL ILE SEQRES 5 A 452 THR SER SER GLY GLU ASN TYR ASP ILE ALA PHE ALA ASP SEQRES 6 A 452 ASN TYR ILE VAL ASN ALA GLN LYS GLY ALA TYR ALA ASP SEQRES 7 A 452 LEU THR GLU LEU TYR LYS LYS GLU GLY LYS ASP LEU TYR SEQRES 8 A 452 LYS ALA LEU ASP PRO ALA TYR ILE LYS GLY ASN THR VAL SEQRES 9 A 452 ASN GLY LYS ILE TYR ALA VAL PRO VAL ALA ALA ASN VAL SEQRES 10 A 452 ALA SER SER GLN ASN PHE ALA PHE ASN GLY THR LEU LEU SEQRES 11 A 452 ALA LYS TYR GLY ILE ASP ILE SER GLY VAL THR SER TYR SEQRES 12 A 452 GLU THR LEU GLU PRO VAL LEU LYS GLN ILE LYS GLU LYS SEQRES 13 A 452 ALA PRO ASP VAL VAL PRO PHE ALA ILE GLY LYS VAL PHE SEQRES 14 A 452 ILE PRO SER ASP ASN PHE ASP TYR PRO VAL ALA ASN GLY SEQRES 15 A 452 LEU PRO PHE VAL ILE ASP LEU GLU GLY ASP THR THR LYS SEQRES 16 A 452 VAL VAL ASN ARG TYR GLU VAL PRO ARG PHE LYS GLU HIS SEQRES 17 A 452 LEU LYS THR LEU HIS LYS PHE TYR GLU ALA GLY TYR ILE SEQRES 18 A 452 PRO LYS ASP VAL ALA THR SER ASP THR SER PHE ASP LEU SEQRES 19 A 452 GLN GLN ASP THR TRP PHE VAL ARG GLU GLU THR VAL GLY SEQRES 20 A 452 PRO ALA ASP TYR GLY ASN SER LEU LEU SER ARG VAL ALA SEQRES 21 A 452 ASN LYS ASP ILE GLN ILE LYS PRO ILE THR ASN PHE ILE SEQRES 22 A 452 LYS LYS ASN GLN THR THR GLN VAL ALA ASN PHE VAL ILE SEQRES 23 A 452 SER ASN ASN SER LYS ASN LYS GLU LYS SER MET GLU ILE SEQRES 24 A 452 LEU ASN LEU LEU ASN THR ASN PRO GLU LEU LEU ASN GLY SEQRES 25 A 452 LEU VAL TYR GLY PRO GLU GLY LYS ASN TRP GLU LYS ILE SEQRES 26 A 452 GLU GLY LYS GLU ASN ARG VAL ARG VAL LEU ASP GLY TYR SEQRES 27 A 452 LYS GLY ASN THR HIS MET GLY GLY TRP ASN THR GLY ASN SEQRES 28 A 452 ASN TRP ILE LEU TYR ILE ASN GLU ASN VAL THR ASP GLN SEQRES 29 A 452 GLN ILE GLU ASN SER LYS LYS GLU LEU ALA GLU ALA LYS SEQRES 30 A 452 GLU SER PRO ALA LEU GLY PHE ILE PHE ASN THR ASP ASN SEQRES 31 A 452 VAL LYS SER GLU ILE SER ALA ILE ALA ASN THR MET GLN SEQRES 32 A 452 GLN PHE ASP THR ALA ILE ASN THR GLY THR VAL ASP PRO SEQRES 33 A 452 ASP LYS ALA ILE PRO GLU LEU MET GLU LYS LEU LYS SER SEQRES 34 A 452 GLU GLY ALA TYR GLU LYS VAL LEU ASN GLU MET GLN LYS SEQRES 35 A 452 GLN TYR ASP GLU PHE LEU LYS ASN LYS LYS HET IOD A 501 1 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD A 506 1 HET IOD A 507 1 HET IOD A 508 1 HET IOD A 509 1 HET IOD A 510 1 HET IOD A 511 1 HET IOD A 512 1 HET IOD A 513 1 HET IOD A 514 1 HET IOD A 515 1 HET IOD A 516 1 HET IOD A 517 1 HET IOD A 518 1 HET IOD A 519 1 HET IOD A 520 1 HET IOD A 521 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 21(I 1-) FORMUL 23 HOH *227(H2 O) HELIX 1 AA1 ASN A 54 GLY A 71 1 18 HELIX 2 AA2 ASP A 83 SER A 94 1 12 HELIX 3 AA3 ASN A 105 LYS A 112 1 8 HELIX 4 AA4 ASP A 117 TYR A 122 1 6 HELIX 5 AA5 GLY A 126 LEU A 133 1 8 HELIX 6 AA6 ASP A 134 ASN A 141 1 8 HELIX 7 AA7 GLY A 166 GLY A 173 1 8 HELIX 8 AA8 SER A 181 ALA A 196 1 16 HELIX 9 AA9 VAL A 241 ALA A 257 1 17 HELIX 10 AB1 GLY A 286 TYR A 290 5 5 HELIX 11 AB2 ASN A 292 ASN A 300 1 9 HELIX 12 AB3 LYS A 314 GLN A 319 1 6 HELIX 13 AB4 ASN A 331 ASN A 345 1 15 HELIX 14 AB5 ASN A 345 GLY A 355 1 11 HELIX 15 AB6 ASP A 375 GLY A 379 5 5 HELIX 16 AB7 ASN A 390 LEU A 394 5 5 HELIX 17 AB8 THR A 401 ALA A 415 1 15 HELIX 18 AB9 VAL A 430 THR A 450 1 21 HELIX 19 AC1 ASP A 454 SER A 468 1 15 HELIX 20 AC2 GLY A 470 ASN A 489 1 20 SHEET 1 AA1 5 LYS A 73 TYR A 78 0 SHEET 2 AA1 5 VAL A 42 GLN A 47 1 N MET A 45 O ASP A 75 SHEET 3 AA1 5 ILE A 100 PHE A 102 1 O ILE A 100 N LYS A 44 SHEET 4 AA1 5 ASN A 322 ILE A 325 -1 O VAL A 324 N ALA A 101 SHEET 5 AA1 5 VAL A 150 PRO A 151 -1 N VAL A 150 O PHE A 323 SHEET 1 AA2 2 THR A 142 VAL A 143 0 SHEET 2 AA2 2 LYS A 146 ILE A 147 -1 O LYS A 146 N VAL A 143 SHEET 1 AA3 4 VAL A 200 PHE A 202 0 SHEET 2 AA3 4 TRP A 278 VAL A 285 1 O VAL A 280 N PRO A 201 SHEET 3 AA3 4 ALA A 157 ASN A 165 -1 N ALA A 163 O ARG A 281 SHEET 4 AA3 4 ILE A 303 PRO A 307 -1 O GLN A 304 N PHE A 164 SHEET 1 AA4 5 VAL A 200 PHE A 202 0 SHEET 2 AA4 5 TRP A 278 VAL A 285 1 O VAL A 280 N PRO A 201 SHEET 3 AA4 5 ALA A 157 ASN A 165 -1 N ALA A 163 O ARG A 281 SHEET 4 AA4 5 ILE A 312 LYS A 313 -1 O ILE A 312 N SER A 158 SHEET 5 AA4 5 LYS A 416 GLU A 417 1 O LYS A 416 N LYS A 313 SHEET 1 AA5 3 PHE A 214 ASP A 215 0 SHEET 2 AA5 3 PHE A 224 ASP A 227 -1 O ILE A 226 N ASP A 215 SHEET 3 AA5 3 VAL A 235 ASN A 237 -1 O VAL A 236 N VAL A 225 SHEET 1 AA6 3 TRP A 361 LYS A 363 0 SHEET 2 AA6 3 ARG A 370 VAL A 373 -1 O ARG A 372 N GLU A 362 SHEET 3 AA6 3 ILE A 396 ASN A 397 1 O ILE A 396 N VAL A 371 CISPEP 1 ASN A 220 GLY A 221 0 -1.26 SITE 1 AC1 1 GLY A 291 SITE 1 AC2 1 GLY A 205 SITE 1 AC3 1 LYS A 367 SITE 1 AC4 1 ASN A 310 SITE 1 AC5 1 ARG A 243 SITE 1 AC6 2 ALA A 436 THR A 440 SITE 1 AC7 1 ASP A 198 SITE 1 AC8 1 ASN A 345 SITE 1 AC9 1 GLY A 258 SITE 1 AD1 1 TYR A 78 SITE 1 AD2 2 HOH A 695 HOH A 699 SITE 1 AD3 3 TYR A 216 LYS A 314 HOH A 798 SITE 1 AD4 1 ASP A 456 CRYST1 60.910 40.200 93.890 90.00 98.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016418 0.000000 0.002533 0.00000 SCALE2 0.000000 0.024876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010777 0.00000