HEADER DE NOVO PROTEIN 03-AUG-16 5SUR TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COVALENT TRIMER DERIVED FROM A- TITLE 2 BETA 17_36. SYNCHROTRON DATA SET. (ORN)CVF(MEA)CED(ORN)AIIGL(ORN)V. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16MER A-BETA PEPTIDE: ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN- COMPND 3 ALA-ILE-ILE-GLY-LEU-ORN-VAL; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: 16MER PEPTIDE DERIVED FROM A-BETA 17-36 KEYWDS AMYLOID, OLIGOMER, ALZHEIMER'S, TRIMER, PROTEIN FIBRIL, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.KREUTZER,S.YOO,J.S.NOWICK REVDAT 6 27-MAR-24 5SUR 1 JRNL REVDAT 5 04-OCT-23 5SUR 1 LINK REVDAT 4 25-DEC-19 5SUR 1 REMARK REVDAT 3 27-SEP-17 5SUR 1 REMARK REVDAT 2 13-SEP-17 5SUR 1 REMARK REVDAT 1 11-JAN-17 5SUR 0 JRNL AUTH A.G.KREUTZER,S.YOO,R.K.SPENCER,J.S.NOWICK JRNL TITL STABILIZATION, ASSEMBLY, AND TOXICITY OF TRIMERS DERIVED JRNL TITL 2 FROM A BETA. JRNL REF J.AM.CHEM.SOC. V. 139 966 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28001392 JRNL DOI 10.1021/JACS.6B11748 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155: 000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 15703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1852 - 4.0045 0.95 1258 140 0.1794 0.2226 REMARK 3 2 4.0045 - 3.1792 0.98 1270 146 0.1923 0.2091 REMARK 3 3 3.1792 - 2.7776 0.97 1305 138 0.2019 0.2559 REMARK 3 4 2.7776 - 2.5237 0.98 1271 140 0.2321 0.3129 REMARK 3 5 2.5237 - 2.3428 0.98 1305 136 0.2370 0.2949 REMARK 3 6 2.3428 - 2.2047 0.99 1286 141 0.2440 0.2865 REMARK 3 7 2.2047 - 2.0943 1.00 1338 144 0.2665 0.2592 REMARK 3 8 2.0943 - 2.0032 0.98 1287 140 0.2790 0.3399 REMARK 3 9 2.0032 - 1.9261 0.98 1283 141 0.3160 0.2966 REMARK 3 10 1.9261 - 1.8596 0.98 1292 147 0.3060 0.2994 REMARK 3 11 1.8596 - 1.8015 0.96 1254 141 0.3561 0.3568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 528 REMARK 3 ANGLE : 0.997 684 REMARK 3 CHIRALITY : 0.066 80 REMARK 3 PLANARITY : 0.004 80 REMARK 3 DIHEDRAL : 30.826 340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0532 -8.7532 -5.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.4050 T22: 0.2891 REMARK 3 T33: 0.3671 T12: -0.0516 REMARK 3 T13: 0.0180 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.3118 L22: 4.0611 REMARK 3 L33: 7.2819 L12: 1.5448 REMARK 3 L13: 4.2207 L23: 4.8184 REMARK 3 S TENSOR REMARK 3 S11: 0.2131 S12: -0.0333 S13: 0.1271 REMARK 3 S21: -0.1579 S22: -0.2653 S23: 0.1440 REMARK 3 S31: 0.4432 S32: -0.4305 S33: 0.0385 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5744 3.3315 -6.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.4182 T22: 0.3877 REMARK 3 T33: 0.3702 T12: -0.0069 REMARK 3 T13: -0.0328 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.6135 L22: 7.2459 REMARK 3 L33: 4.2451 L12: 5.1225 REMARK 3 L13: 4.8459 L23: 4.8379 REMARK 3 S TENSOR REMARK 3 S11: -0.5358 S12: 0.0490 S13: -0.4843 REMARK 3 S21: -0.4097 S22: 0.2957 S23: -0.1048 REMARK 3 S31: -0.1303 S32: 0.1111 S33: 0.2977 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5105 10.1568 -18.2675 REMARK 3 T TENSOR REMARK 3 T11: 0.6549 T22: 0.5079 REMARK 3 T33: 0.4532 T12: 0.0811 REMARK 3 T13: -0.0266 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 5.7214 L22: 5.2642 REMARK 3 L33: 7.7360 L12: 5.4570 REMARK 3 L13: -4.5784 L23: -4.6279 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: -0.4960 S13: -0.8187 REMARK 3 S21: 1.1446 S22: -0.4169 S23: -0.6453 REMARK 3 S31: 0.2680 S32: 0.2789 S33: 0.4661 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9141 13.3726 -6.8227 REMARK 3 T TENSOR REMARK 3 T11: 0.4608 T22: 0.4210 REMARK 3 T33: 0.3291 T12: 0.0407 REMARK 3 T13: -0.0648 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 8.7937 L22: 8.2389 REMARK 3 L33: 2.1037 L12: 0.1967 REMARK 3 L13: 1.5665 L23: -1.3705 REMARK 3 S TENSOR REMARK 3 S11: 0.6304 S12: -0.1987 S13: -0.3701 REMARK 3 S21: -0.5363 S22: 0.0113 S23: -0.6311 REMARK 3 S31: 0.7752 S32: 0.7281 S33: -0.5652 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, NON FIXED REMARK 200 EXIT SLIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.801 REMARK 200 RESOLUTION RANGE LOW (A) : 27.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01053 REMARK 200 R SYM (I) : 0.01490 REMARK 200 FOR THE DATA SET : 23.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65420 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5SUS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER AT PH 7.83, 0.2 M REMARK 280 MGCL2, 3.32 M 1,6-HEXANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.07000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.07000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.07000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.07000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -337.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 49.71072 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.40100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -47.07000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -57.40100 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -47.07000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 49.71072 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -47.07000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 -57.40100 REMARK 350 BIOMT2 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -47.07000 REMARK 350 BIOMT1 8 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 8 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -47.07000 REMARK 350 BIOMT1 9 0.500000 -0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 9 0.866025 0.500000 0.000000 49.71072 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -47.07000 REMARK 350 BIOMT1 10 -0.500000 0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 10 0.866025 0.500000 0.000000 49.71072 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.866025 0.000000 -57.40100 REMARK 350 BIOMT2 12 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 49.71072 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.40100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -28.70050 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 49.71072 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -57.40100 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HN3 ORN A 1 HN3 ORN A 1 8555 1.15 REMARK 500 O HOH A 206 O HOH B 114 2455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 7 OE1 REMARK 620 2 HOH D 206 O 37.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SUS RELATED DB: PDB REMARK 900 RELATED ID: 5SUT RELATED DB: PDB REMARK 900 RELATED ID: 5SUU RELATED DB: PDB DBREF 5SUR A 1 16 PDB 5SUR 5SUR 1 16 DBREF 5SUR B 1 16 PDB 5SUR 5SUR 1 16 DBREF 5SUR C 1 16 PDB 5SUR 5SUR 1 16 DBREF 5SUR D 1 16 PDB 5SUR 5SUR 1 16 SEQRES 1 A 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 A 16 LEU ORN VAL SEQRES 1 B 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 B 16 LEU ORN VAL SEQRES 1 C 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 C 16 LEU ORN VAL SEQRES 1 D 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 D 16 LEU ORN VAL HET ORN A 1 19 HET MEA A 5 23 HET ORN A 9 19 HET ORN A 15 19 HET ORN B 1 19 HET MEA B 5 23 HET ORN B 9 19 HET ORN B 15 19 HET ORN C 1 19 HET MEA C 5 23 HET ORN C 9 19 HET ORN C 15 19 HET ORN D 1 19 HET MEA D 5 23 HET ORN D 9 19 HET ORN D 15 19 HET NA A 101 1 HET HEZ A 102 22 HET HEZ A 103 22 HET CL C 101 1 HET HEZ C 102 22 HET HEZ C 103 22 HET CL D 101 1 HET NA D 102 1 HETNAM ORN L-ORNITHINE HETNAM MEA N-METHYLPHENYLALANINE HETNAM NA SODIUM ION HETNAM HEZ HEXANE-1,6-DIOL HETNAM CL CHLORIDE ION FORMUL 1 ORN 12(C5 H12 N2 O2) FORMUL 1 MEA 4(C10 H13 N O2) FORMUL 5 NA 2(NA 1+) FORMUL 6 HEZ 4(C6 H14 O2) FORMUL 8 CL 2(CL 1-) FORMUL 13 HOH *35(H2 O) SHEET 1 AA1 2 CYS A 2 GLU A 7 0 SHEET 2 AA1 2 ILE A 11 VAL A 16 -1 O VAL A 16 N CYS A 2 SHEET 1 AA2 4 CYS B 2 GLU B 7 0 SHEET 2 AA2 4 ILE B 11 VAL B 16 -1 O VAL B 16 N CYS B 2 SHEET 3 AA2 4 ALA D 10 VAL D 16 -1 O GLY D 13 N ILE B 11 SHEET 4 AA2 4 CYS D 2 GLU D 7 -1 N CYS D 2 O VAL D 16 SHEET 1 AA3 4 CYS B 2 GLU B 7 0 SHEET 2 AA3 4 ILE B 11 VAL B 16 -1 O VAL B 16 N CYS B 2 SHEET 3 AA3 4 ALA C 10 VAL C 16 -1 O ILE C 11 N GLY B 13 SHEET 4 AA3 4 CYS C 2 CYS C 6 -1 N CYS C 2 O VAL C 16 SHEET 1 AA4 4 CYS C 2 CYS C 6 0 SHEET 2 AA4 4 ALA C 10 VAL C 16 -1 O VAL C 16 N CYS C 2 SHEET 3 AA4 4 ALA D 10 VAL D 16 -1 O ILE D 11 N GLY C 13 SHEET 4 AA4 4 CYS D 2 GLU D 7 -1 N CYS D 2 O VAL D 16 SSBOND 1 CYS A 2 CYS B 6 1555 8555 2.05 SSBOND 2 CYS A 6 CYS D 2 1555 7455 2.03 SSBOND 3 CYS B 2 CYS D 6 1555 3455 2.03 SSBOND 4 CYS C 2 CYS C 6 1555 2565 2.04 LINK C ORN A 1 N CYS A 2 1555 1555 1.37 LINK NE ORN A 1 C VAL A 16 1555 1555 1.37 LINK C PHE A 4 N MEA A 5 1555 1555 1.33 LINK C MEA A 5 N CYS A 6 1555 1555 1.33 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK C LEU A 14 N ORN A 15 1555 1555 1.34 LINK C ORN A 15 N VAL A 16 1555 1555 1.33 LINK C ORN B 1 N CYS B 2 1555 1555 1.38 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C PHE B 4 N MEA B 5 1555 1555 1.33 LINK C MEA B 5 N CYS B 6 1555 1555 1.33 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK C LEU B 14 N ORN B 15 1555 1555 1.33 LINK C ORN B 15 N VAL B 16 1555 1555 1.33 LINK C ORN C 1 N CYS C 2 1555 1555 1.37 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C PHE C 4 N MEA C 5 1555 1555 1.34 LINK C MEA C 5 N CYS C 6 1555 1555 1.33 LINK C ASP C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 LINK C LEU C 14 N ORN C 15 1555 1555 1.33 LINK C ORN C 15 N VAL C 16 1555 1555 1.33 LINK C ORN D 1 N CYS D 2 1555 1555 1.37 LINK NE ORN D 1 C VAL D 16 1555 1555 1.38 LINK C PHE D 4 N MEA D 5 1555 1555 1.33 LINK C MEA D 5 N CYS D 6 1555 1555 1.33 LINK C ASP D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N ALA D 10 1555 1555 1.37 LINK C LEU D 14 N ORN D 15 1555 1555 1.34 LINK C ORN D 15 N VAL D 16 1555 1555 1.33 LINK OE1 GLU A 7 NA NA D 102 1555 7455 2.65 LINK NA NA D 102 O HOH D 206 1555 1555 2.40 SITE 1 AC1 1 CL D 101 SITE 1 AC2 5 GLU A 7 ILE A 11 GLU B 7 ILE B 11 SITE 2 AC2 5 NA D 102 SITE 1 AC3 2 HEZ C 103 GLU D 7 SITE 1 AC4 2 ILE C 11 HOH C 207 SITE 1 AC5 5 GLU C 7 ILE C 11 CL C 101 GLU D 7 SITE 2 AC5 5 ILE D 11 SITE 1 AC6 3 GLU A 7 NA A 101 HOH B 102 SITE 1 AC7 3 GLU A 7 HEZ A 103 HOH D 206 CRYST1 57.401 57.401 94.140 90.00 90.00 120.00 P 63 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017421 0.010058 0.000000 0.00000 SCALE2 0.000000 0.020116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010622 0.00000 HETATM 1 N ORN A 1 -20.221 -0.924 -1.276 1.00 32.50 N ANISOU 1 N ORN A 1 3659 3405 5285 -379 886 -245 N HETATM 2 CA ORN A 1 -21.445 -1.465 -1.793 1.00 33.07 C ANISOU 2 CA ORN A 1 3908 3419 5238 -341 803 -90 C HETATM 3 CB ORN A 1 -21.109 -2.490 -2.867 1.00 31.81 C ANISOU 3 CB ORN A 1 3783 3415 4889 -373 893 -150 C HETATM 4 CG ORN A 1 -20.431 -1.861 -4.074 1.00 33.99 C ANISOU 4 CG ORN A 1 4063 3821 5030 -654 1061 -116 C HETATM 5 CD ORN A 1 -21.412 -0.980 -4.849 1.00 38.45 C ANISOU 5 CD ORN A 1 4885 4210 5513 -823 978 185 C HETATM 6 NE ORN A 1 -22.518 -1.800 -5.319 1.00 32.99 N ANISOU 6 NE ORN A 1 4323 3486 4724 -691 875 258 N HETATM 7 C ORN A 1 -22.246 -2.160 -0.679 1.00 37.60 C ANISOU 7 C ORN A 1 4491 3946 5847 -150 673 -125 C HETATM 8 O ORN A 1 -21.742 -2.446 0.421 1.00 37.70 O ANISOU 8 O ORN A 1 4422 3970 5931 -34 636 -262 O HETATM 9 H2 ORN A 1 -19.771 -0.261 -1.913 1.00 39.00 H HETATM 10 H ORN A 1 -19.513 -1.637 -1.083 1.00 39.00 H HETATM 11 HA ORN A 1 -22.029 -0.618 -2.164 1.00 39.68 H HETATM 12 HB2 ORN A 1 -22.034 -2.974 -3.210 1.00 38.17 H HETATM 13 HB3 ORN A 1 -20.420 -3.231 -2.439 1.00 38.17 H HETATM 14 HG2 ORN A 1 -20.064 -2.654 -4.736 1.00 40.79 H HETATM 15 HG3 ORN A 1 -19.584 -1.253 -3.737 1.00 40.79 H HETATM 16 HD2 ORN A 1 -21.794 -0.196 -4.188 1.00 46.14 H HETATM 17 HD3 ORN A 1 -20.898 -0.551 -5.714 1.00 46.14 H HETATM 18 HE1 ORN A 1 -22.346 -2.294 -6.192 1.00 39.58 H HETATM 19 HN3 ORN A 1 -20.342 -0.415 -0.397 1.00 39.00 H