HEADER DE NOVO PROTEIN 03-AUG-16 5SUS TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COVALENT TRIMER DERIVED FROM A- TITLE 2 BETA 17_36. X-RAY DIFFRACTOMETER DATA SET. (ORN)CVF(MEA)CED(ORN) TITLE 3 AIIGL(ORN)V. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16MER A-BETA PEPTIDE: ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN- COMPND 3 ALA-ILE-ILE-GLY-LEU-ORN-VAL; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: 16MER PEPTIDE DERIVED FROM A-BETA 17-36 KEYWDS AMYLOID, OLIGOMER, ALZHEIMER'S, TRIMER, PROTEIN FIBRIL, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.KREUTZER,S.YOO,J.S.NOWICK REVDAT 4 27-MAR-24 5SUS 1 JRNL LINK REVDAT 3 25-DEC-19 5SUS 1 REMARK REVDAT 2 13-SEP-17 5SUS 1 REMARK REVDAT 1 11-JAN-17 5SUS 0 JRNL AUTH A.G.KREUTZER,S.YOO,R.K.SPENCER,J.S.NOWICK JRNL TITL STABILIZATION, ASSEMBLY, AND TOXICITY OF TRIMERS DERIVED JRNL TITL 2 FROM A BETA. JRNL REF J.AM.CHEM.SOC. V. 139 966 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28001392 JRNL DOI 10.1021/JACS.6B11748 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 3727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3051 - 4.0126 1.00 1301 144 0.2114 0.2582 REMARK 3 2 4.0126 - 3.1865 1.00 1284 138 0.2145 0.2984 REMARK 3 3 3.1865 - 2.7841 1.00 1290 144 0.2253 0.2716 REMARK 3 4 2.7841 - 2.5298 1.00 1287 140 0.2434 0.3112 REMARK 3 5 2.5298 - 2.3485 1.00 1276 144 0.2197 0.2908 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 500 REMARK 3 ANGLE : 0.795 660 REMARK 3 CHIRALITY : 0.058 80 REMARK 3 PLANARITY : 0.002 80 REMARK 3 DIHEDRAL : 29.991 320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8639 18.4421 41.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.3391 T22: 0.0741 REMARK 3 T33: 0.4846 T12: 0.1158 REMARK 3 T13: -0.0479 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.6917 L22: 2.0527 REMARK 3 L33: 1.2263 L12: -2.7486 REMARK 3 L13: -1.4155 L23: 1.0915 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: 0.2154 S13: -0.0237 REMARK 3 S21: 0.4413 S22: -0.0121 S23: -1.1394 REMARK 3 S31: 0.5892 S32: 0.3761 S33: 0.0988 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5475 29.7980 40.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.2025 REMARK 3 T33: 0.4263 T12: 0.0196 REMARK 3 T13: -0.0067 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 6.2340 L22: 2.1856 REMARK 3 L33: 5.5607 L12: 2.2230 REMARK 3 L13: 2.1643 L23: 1.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.3108 S12: 0.2962 S13: -0.3412 REMARK 3 S21: 0.1685 S22: -0.2388 S23: -0.3008 REMARK 3 S31: -0.0992 S32: 0.2711 S33: -0.1146 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7478 43.2483 40.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.2670 REMARK 3 T33: 0.4228 T12: 0.0341 REMARK 3 T13: -0.0397 T23: -0.0763 REMARK 3 L TENSOR REMARK 3 L11: 8.4903 L22: 5.1113 REMARK 3 L33: 5.8292 L12: -0.7575 REMARK 3 L13: 0.6490 L23: -3.8455 REMARK 3 S TENSOR REMARK 3 S11: 0.2992 S12: 0.5693 S13: -0.0272 REMARK 3 S21: 0.4281 S22: -0.1863 S23: -0.0326 REMARK 3 S31: -0.7830 S32: 0.9569 S33: -0.3524 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1333 34.1751 28.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.4661 REMARK 3 T33: 0.4431 T12: 0.0268 REMARK 3 T13: -0.0968 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 8.0041 L22: 6.8080 REMARK 3 L33: 4.0707 L12: -5.9140 REMARK 3 L13: 1.4896 L23: -2.7830 REMARK 3 S TENSOR REMARK 3 S11: -0.5433 S12: -0.9443 S13: 0.7918 REMARK 3 S21: 0.4420 S22: -0.0336 S23: -1.2134 REMARK 3 S31: -0.5370 S32: -0.6129 S33: 0.3369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.349 REMARK 200 RESOLUTION RANGE LOW (A) : 26.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.00887 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.04055 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER AT PH 7.7, 0.2 M REMARK 280 MGCL2, 3.45 M 1,6-HEXANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.84100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.84100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.84100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.84100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.84100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.84100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.68200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 57.08500 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 93.68200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 28.54250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 28.54250 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.84100 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 46.84100 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 46.84100 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -269.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 28.54250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 28.54250 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.84100 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 46.84100 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 49.43706 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 46.84100 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 28.54250 REMARK 350 BIOMT2 7 0.000000 -1.000000 0.000000 49.43706 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -46.84100 REMARK 350 BIOMT1 8 0.500000 0.866025 0.000000 -28.54250 REMARK 350 BIOMT2 8 -0.866025 0.500000 0.000000 49.43706 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -46.84100 REMARK 350 BIOMT1 9 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 9 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -46.84100 REMARK 350 BIOMT1 10 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 10 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 93.68200 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 -28.54250 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 49.43706 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 93.68200 REMARK 350 BIOMT1 12 -0.500000 -0.866025 0.000000 28.54250 REMARK 350 BIOMT2 12 -0.866025 0.500000 0.000000 49.43706 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 93.68200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 108 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 103 O HOH D 105 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 1 and VAL B 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 1 and CYS B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE B 4 and MEA B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA B 5 and CYS B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP B 8 and ORN B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 9 and ALA B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 14 and ORN B REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 15 and VAL B REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 1 and CYS C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 1 and VAL C 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 4 and MEA C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA C 5 and CYS C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP C 8 and ORN C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 9 and ALA C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 14 and ORN C REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 15 and VAL C REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 1 and CYS D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 1 and VAL D 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE D 4 and MEA D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA D 5 and CYS D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP D 8 and ORN D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 9 and ALA D 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 14 and ORN D REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 15 and VAL D REMARK 800 16 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SUR RELATED DB: PDB REMARK 900 RELATED ID: 5SUT RELATED DB: PDB REMARK 900 RELATED ID: 5SUU RELATED DB: PDB DBREF 5SUS A 1 16 PDB 5SUS 5SUS 1 16 DBREF 5SUS B 1 16 PDB 5SUS 5SUS 1 16 DBREF 5SUS C 1 16 PDB 5SUS 5SUS 1 16 DBREF 5SUS D 1 16 PDB 5SUS 5SUS 1 16 SEQRES 1 A 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 A 16 LEU ORN VAL SEQRES 1 B 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 B 16 LEU ORN VAL SEQRES 1 C 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 C 16 LEU ORN VAL SEQRES 1 D 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 D 16 LEU ORN VAL HET ORN A 1 19 HET MEA A 5 23 HET ORN A 9 19 HET ORN A 15 19 HET ORN B 1 19 HET MEA B 5 23 HET ORN B 9 19 HET ORN B 15 19 HET ORN C 1 19 HET MEA C 5 23 HET ORN C 9 19 HET ORN C 15 19 HET ORN D 1 19 HET MEA D 5 23 HET ORN D 9 19 HET ORN D 15 19 HET CL B 101 1 HET NA C 101 1 HETNAM ORN L-ORNITHINE HETNAM MEA N-METHYLPHENYLALANINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 ORN 12(C5 H12 N2 O2) FORMUL 1 MEA 4(C10 H13 N O2) FORMUL 5 CL CL 1- FORMUL 6 NA NA 1+ FORMUL 7 HOH *27(H2 O) SHEET 1 AA1 2 CYS A 2 GLU A 7 0 SHEET 2 AA1 2 ILE A 11 VAL A 16 -1 O ILE A 12 N CYS A 6 SHEET 1 AA2 4 CYS B 2 GLU B 7 0 SHEET 2 AA2 4 ILE B 11 VAL B 16 -1 O VAL B 16 N CYS B 2 SHEET 3 AA2 4 ALA D 10 VAL D 16 -1 O ILE D 11 N GLY B 13 SHEET 4 AA2 4 CYS D 2 GLU D 7 -1 N CYS D 2 O VAL D 16 SHEET 1 AA3 4 CYS B 2 GLU B 7 0 SHEET 2 AA3 4 ILE B 11 VAL B 16 -1 O VAL B 16 N CYS B 2 SHEET 3 AA3 4 ALA C 10 VAL C 16 -1 O GLY C 13 N ILE B 11 SHEET 4 AA3 4 CYS C 2 GLU C 7 -1 N PHE C 4 O LEU C 14 SHEET 1 AA4 4 CYS C 2 GLU C 7 0 SHEET 2 AA4 4 ALA C 10 VAL C 16 -1 O LEU C 14 N PHE C 4 SHEET 3 AA4 4 ALA D 10 VAL D 16 -1 O GLY D 13 N ILE C 11 SHEET 4 AA4 4 CYS D 2 GLU D 7 -1 N CYS D 2 O VAL D 16 SSBOND 1 CYS A 2 CYS B 6 1555 7556 2.03 SSBOND 2 CYS A 6 CYS C 2 1555 9656 2.03 SSBOND 3 CYS B 2 CYS C 6 1555 3565 2.03 SSBOND 4 CYS D 2 CYS D 6 1555 2665 2.03 LINK C ORN A 1 N CYS A 2 1555 1555 1.37 LINK NE ORN A 1 C VAL A 16 1555 1555 1.38 LINK C PHE A 4 N MEA A 5 1555 1555 1.33 LINK C MEA A 5 N CYS A 6 1555 1555 1.33 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK C LEU A 14 N ORN A 15 1555 1555 1.33 LINK C ORN A 15 N VAL A 16 1555 1555 1.33 LINK C ORN B 1 N CYS B 2 1555 1555 1.37 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C PHE B 4 N MEA B 5 1555 1555 1.33 LINK C MEA B 5 N CYS B 6 1555 1555 1.33 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK C LEU B 14 N ORN B 15 1555 1555 1.33 LINK C ORN B 15 N VAL B 16 1555 1555 1.33 LINK C ORN C 1 N CYS C 2 1555 1555 1.37 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C PHE C 4 N MEA C 5 1555 1555 1.33 LINK C MEA C 5 N CYS C 6 1555 1555 1.33 LINK C ASP C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 LINK C LEU C 14 N ORN C 15 1555 1555 1.33 LINK C ORN C 15 N VAL C 16 1555 1555 1.33 LINK C ORN D 1 N CYS D 2 1555 1555 1.38 LINK NE ORN D 1 C VAL D 16 1555 1555 1.38 LINK C PHE D 4 N MEA D 5 1555 1555 1.33 LINK C MEA D 5 N CYS D 6 1555 1555 1.33 LINK C ASP D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N ALA D 10 1555 1555 1.37 LINK C LEU D 14 N ORN D 15 1555 1555 1.33 LINK C ORN D 15 N VAL D 16 1555 1555 1.33 SITE 1 AC1 3 ORN B 15 GLU C 7 ORN D 15 SITE 1 AC2 1 VAL B 3 SITE 1 AC3 6 CYS B 2 PHE B 4 LEU B 14 ORN B 15 SITE 2 AC3 6 CYS C 6 GLU C 7 SITE 1 AC4 8 VAL B 3 PHE B 4 LEU B 14 ORN B 15 SITE 2 AC4 8 VAL B 16 MEA C 5 CYS C 6 GLU C 7 SITE 1 AC5 10 CYS A 2 VAL A 3 PHE A 4 CYS B 2 SITE 2 AC5 10 VAL B 3 CYS B 6 ILE B 12 GLY B 13 SITE 3 AC5 10 LEU B 14 VAL B 16 SITE 1 AC6 11 ORN A 1 CYS A 2 VAL A 3 VAL A 16 SITE 2 AC6 11 VAL B 3 PHE B 4 GLU B 7 ALA B 10 SITE 3 AC6 11 ILE B 11 ILE B 12 GLY B 13 SITE 1 AC7 4 GLU B 7 ALA B 10 HOH B 201 HOH B 203 SITE 1 AC8 8 CYS B 6 GLU B 7 ASP B 8 ILE B 11 SITE 2 AC8 8 ILE B 12 HOH B 203 ILE C 12 GLY C 13 SITE 1 AC9 11 ORN A 1 VAL A 16 CYS B 2 VAL B 3 SITE 2 AC9 11 PHE B 4 ILE B 12 GLY B 13 VAL B 16 SITE 3 AC9 11 CL B 101 ORN D 9 ILE D 11 SITE 1 AD1 7 ORN B 1 CYS B 2 PHE B 4 LEU B 14 SITE 2 AD1 7 CL B 101 ORN D 9 ILE D 11 SITE 1 AD2 7 MEA A 5 CYS A 6 GLU A 7 VAL C 3 SITE 2 AD2 7 LEU C 14 ORN C 15 VAL C 16 SITE 1 AD3 7 CYS A 6 GLU A 7 CYS C 2 PHE C 4 SITE 2 AD3 7 LEU C 14 ORN C 15 HOH C 203 SITE 1 AD4 8 CYS B 2 VAL B 3 VAL C 3 CYS C 6 SITE 2 AD4 8 ILE C 12 GLY C 13 LEU C 14 VAL C 16 SITE 1 AD5 7 ORN B 1 CYS B 2 VAL B 3 PHE C 4 SITE 2 AD5 7 GLU C 7 ILE C 11 ILE C 12 SITE 1 AD6 4 GLU C 7 ALA C 10 ILE C 11 ORN D 15 SITE 1 AD7 6 GLU C 7 ASP C 8 ILE C 11 HOH C 202 SITE 2 AD7 6 GLY D 13 ORN D 15 SITE 1 AD8 8 GLU A 7 HOH A 101 CYS C 2 VAL C 3 SITE 2 AD8 8 PHE C 4 ILE C 12 GLY C 13 VAL C 16 SITE 1 AD9 7 GLU A 7 HOH A 101 ORN C 1 CYS C 2 SITE 2 AD9 7 PHE C 4 LEU C 14 HOH C 203 SITE 1 AE1 9 VAL D 3 PHE D 4 MEA D 5 CYS D 6 SITE 2 AE1 9 GLU D 7 ASP D 8 LEU D 14 ORN D 15 SITE 3 AE1 9 VAL D 16 SITE 1 AE2 7 CYS D 2 PHE D 4 CYS D 6 GLU D 7 SITE 2 AE2 7 ASP D 8 LEU D 14 ORN D 15 SITE 1 AE3 7 CYS D 2 VAL D 3 CYS D 6 ILE D 12 SITE 2 AE3 7 GLY D 13 LEU D 14 VAL D 16 SITE 1 AE4 9 ORN D 1 CYS D 2 VAL D 3 PHE D 4 SITE 2 AE4 9 GLU D 7 ILE D 11 ILE D 12 GLY D 13 SITE 3 AE4 9 VAL D 16 SITE 1 AE5 5 ORN B 15 ORN D 1 GLU D 7 ALA D 10 SITE 2 AE5 5 HOH D 101 SITE 1 AE6 5 GLY B 13 ORN B 15 GLU D 7 ASP D 8 SITE 2 AE6 5 ILE D 11 SITE 1 AE7 10 CL B 101 GLU C 7 ORN C 9 CYS D 2 SITE 2 AE7 10 VAL D 3 PHE D 4 ILE D 12 GLY D 13 SITE 3 AE7 10 VAL D 16 HOH D 102 SITE 1 AE8 9 CL B 101 GLU C 7 ORN C 9 ORN D 1 SITE 2 AE8 9 CYS D 2 PHE D 4 CYS D 6 LEU D 14 SITE 3 AE8 9 HOH D 102 CRYST1 57.085 57.085 93.682 90.00 90.00 120.00 P 63 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017518 0.010114 0.000000 0.00000 SCALE2 0.000000 0.020228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010674 0.00000 HETATM 1 N ORN A 1 19.619 31.690 45.726 1.00 46.21 N ANISOU 1 N ORN A 1 4844 4488 8226 -10 -164 390 N HETATM 2 CA ORN A 1 19.239 30.401 45.154 1.00 23.93 C ANISOU 2 CA ORN A 1 2300 1731 5061 30 -129 449 C HETATM 3 CB ORN A 1 20.138 30.101 43.941 1.00 30.43 C ANISOU 3 CB ORN A 1 2876 2517 6171 81 83 512 C HETATM 4 CG ORN A 1 19.859 31.011 42.735 1.00 36.27 C ANISOU 4 CG ORN A 1 3411 3370 7001 92 481 643 C HETATM 5 CD ORN A 1 18.631 30.560 41.935 1.00 31.60 C ANISOU 5 CD ORN A 1 3087 2973 5945 149 628 712 C HETATM 6 NE ORN A 1 18.839 29.244 41.380 1.00 36.18 N ANISOU 6 NE ORN A 1 3789 3542 6415 193 612 727 N HETATM 7 C ORN A 1 19.373 29.268 46.205 1.00 38.62 C ANISOU 7 C ORN A 1 4398 3520 6755 71 -449 361 C HETATM 8 O ORN A 1 19.766 29.483 47.351 1.00 22.03 O ANISOU 8 O ORN A 1 2241 1335 4794 73 -725 252 O HETATM 9 H2 ORN A 1 20.630 31.802 45.834 1.00 55.46 H HETATM 10 H ORN A 1 19.227 31.851 46.657 1.00 55.46 H HETATM 11 HA ORN A 1 18.181 30.487 44.887 1.00 28.71 H HETATM 12 HB2 ORN A 1 21.196 30.204 44.223 1.00 36.52 H HETATM 13 HB3 ORN A 1 19.929 29.071 43.620 1.00 36.52 H HETATM 14 HG2 ORN A 1 19.700 32.035 43.092 1.00 43.53 H HETATM 15 HG3 ORN A 1 20.732 30.998 42.073 1.00 43.53 H HETATM 16 HD2 ORN A 1 17.763 30.535 42.600 1.00 37.92 H HETATM 17 HD3 ORN A 1 18.471 31.263 41.113 1.00 37.92 H HETATM 18 HE1 ORN A 1 19.317 29.221 40.481 1.00 43.42 H HETATM 19 HN3 ORN A 1 19.317 32.489 45.162 1.00 55.46 H