HEADER SIGNALING PROTEIN 04-AUG-16 5SUY TITLE DOMAIN-SWAPPED DIMER OF HUMAN DISHEVELLED2 DEP DOMAIN: MONOCLINIC TITLE 2 CRYSTAL FORM CRYSTALLISED FROM DIMERIC FRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 416-510; COMPND 5 SYNONYM: DISHEVELLED-2,DSH HOMOLOG 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DVL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-41 KEYWDS DISHEVELLED, DEP DOMAIN, WNT SIGNALLING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,M.V.GAMMONS,M.BIENZ REVDAT 3 01-MAY-24 5SUY 1 REMARK REVDAT 2 19-OCT-16 5SUY 1 JRNL REVDAT 1 12-OCT-16 5SUY 0 JRNL AUTH M.V.GAMMONS,M.RENKO,C.M.JOHNSON,T.J.RUTHERFORD,M.BIENZ JRNL TITL WNT SIGNALOSOME ASSEMBLY BY DEP DOMAIN SWAPPING OF JRNL TITL 2 DISHEVELLED. JRNL REF MOL.CELL V. 64 92 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27692984 JRNL DOI 10.1016/J.MOLCEL.2016.08.026 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 32604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 11.53000 REMARK 3 B33 (A**2) : -11.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3104 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2933 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4204 ; 1.591 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6735 ; 1.002 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;31.246 ;22.374 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;14.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3451 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 1.482 ; 2.398 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1513 ; 1.482 ; 2.397 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1887 ; 2.269 ; 3.582 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1888 ; 2.268 ; 3.583 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 1.933 ; 2.755 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1578 ; 1.914 ; 2.733 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2297 ; 3.053 ; 3.980 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3373 ; 4.766 ;19.618 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3358 ; 4.768 ;19.555 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.202 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, H+L REMARK 3 TWIN FRACTION : 0.798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0228 8.9213 -26.4713 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0154 REMARK 3 T33: 0.0438 T12: -0.0037 REMARK 3 T13: 0.0020 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.4432 L22: 0.5703 REMARK 3 L33: 1.5619 L12: 0.3335 REMARK 3 L13: 1.7237 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0336 S13: -0.0543 REMARK 3 S21: 0.0602 S22: -0.0536 S23: 0.0410 REMARK 3 S31: -0.0992 S32: 0.0654 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 449 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4027 5.6856 -2.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0364 REMARK 3 T33: 0.0506 T12: 0.0055 REMARK 3 T13: -0.0099 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.7854 L22: 2.0742 REMARK 3 L33: 11.5819 L12: 0.8632 REMARK 3 L13: -2.9388 L23: -4.7609 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.1219 S13: 0.2338 REMARK 3 S21: 0.1108 S22: 0.0634 S23: -0.0583 REMARK 3 S31: -0.2025 S32: -0.2245 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 450 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9330 13.6484 12.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0407 REMARK 3 T33: 0.0569 T12: -0.0212 REMARK 3 T13: 0.0028 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.5351 L22: 2.4438 REMARK 3 L33: 1.9445 L12: 2.0336 REMARK 3 L13: 1.3308 L23: 1.2300 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.1651 S13: 0.2372 REMARK 3 S21: -0.0310 S22: 0.0348 S23: 0.0934 REMARK 3 S31: -0.2228 S32: 0.0424 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 476 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8593 3.2391 7.7716 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0767 REMARK 3 T33: 0.0564 T12: 0.0163 REMARK 3 T13: 0.0242 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.8214 L22: 2.0342 REMARK 3 L33: 2.6966 L12: 0.7933 REMARK 3 L13: 0.2577 L23: 0.7525 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.1842 S13: -0.0886 REMARK 3 S21: -0.0505 S22: 0.0897 S23: -0.0862 REMARK 3 S31: 0.1065 S32: 0.2237 S33: -0.0766 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 415 B 441 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9580 8.6688 20.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0401 REMARK 3 T33: 0.0727 T12: 0.0170 REMARK 3 T13: -0.0002 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.5240 L22: 0.4131 REMARK 3 L33: 2.9360 L12: 0.1921 REMARK 3 L13: 1.1683 L23: 0.7516 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0587 S13: -0.0025 REMARK 3 S21: -0.0555 S22: -0.0737 S23: 0.0390 REMARK 3 S31: -0.0744 S32: 0.0435 S33: 0.0661 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 442 B 466 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1378 9.8007 -13.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0204 REMARK 3 T33: 0.0477 T12: -0.0108 REMARK 3 T13: 0.0057 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.4870 L22: 0.2125 REMARK 3 L33: 3.4128 L12: -0.5563 REMARK 3 L13: 2.6319 L23: -0.3546 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.0290 S13: 0.0860 REMARK 3 S21: -0.0227 S22: -0.0243 S23: -0.0177 REMARK 3 S31: -0.1718 S32: -0.0036 S33: 0.0880 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 467 B 494 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7008 6.4865 -15.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.1165 REMARK 3 T33: 0.0394 T12: 0.0043 REMARK 3 T13: 0.0175 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.3807 L22: 2.8476 REMARK 3 L33: 1.9472 L12: -2.3273 REMARK 3 L13: 1.7743 L23: -0.8323 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: -0.5159 S13: -0.0677 REMARK 3 S21: 0.1121 S22: 0.1441 S23: 0.0103 REMARK 3 S31: -0.0187 S32: -0.3080 S33: -0.0726 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 495 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8510 4.0207 -13.9109 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0947 REMARK 3 T33: 0.0300 T12: 0.0064 REMARK 3 T13: 0.0036 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.9738 L22: 2.0799 REMARK 3 L33: 2.6424 L12: 0.7459 REMARK 3 L13: 0.9109 L23: -1.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.4412 S13: -0.1739 REMARK 3 S21: -0.0405 S22: 0.1132 S23: -0.0206 REMARK 3 S31: -0.0254 S32: -0.0362 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 415 C 437 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8921 21.0329 28.4746 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.0322 REMARK 3 T33: 0.0152 T12: -0.0075 REMARK 3 T13: 0.0316 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.7942 L22: 0.9789 REMARK 3 L33: 1.8712 L12: -1.0717 REMARK 3 L13: -1.6192 L23: -0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.1053 S13: 0.1007 REMARK 3 S21: -0.0780 S22: 0.0236 S23: -0.0555 REMARK 3 S31: 0.1278 S32: -0.1445 S33: -0.0251 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 438 C 446 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1189 21.1439 11.4423 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.0434 REMARK 3 T33: 0.0264 T12: 0.0524 REMARK 3 T13: -0.0200 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.1490 L22: 0.9845 REMARK 3 L33: 8.4626 L12: 0.9319 REMARK 3 L13: -1.7154 L23: -0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0050 S13: -0.0564 REMARK 3 S21: 0.0689 S22: 0.0821 S23: -0.0738 REMARK 3 S31: 0.4530 S32: 0.4074 S33: -0.0769 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 447 C 494 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4027 20.1140 -10.0812 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0465 REMARK 3 T33: 0.0317 T12: 0.0297 REMARK 3 T13: 0.0290 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.4281 L22: 0.5419 REMARK 3 L33: 2.1692 L12: -0.6056 REMARK 3 L13: -1.6319 L23: 0.2606 REMARK 3 S TENSOR REMARK 3 S11: -0.1476 S12: -0.2627 S13: -0.0221 REMARK 3 S21: 0.0243 S22: -0.0021 S23: -0.0234 REMARK 3 S31: 0.2036 S32: 0.2133 S33: 0.1497 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 495 C 509 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4255 25.0519 -7.6389 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0160 REMARK 3 T33: 0.0185 T12: 0.0109 REMARK 3 T13: 0.0226 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.3700 L22: 1.0038 REMARK 3 L33: 3.3967 L12: -0.0796 REMARK 3 L13: -0.6785 L23: 0.6309 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.1267 S13: 0.0753 REMARK 3 S21: 0.1321 S22: 0.0605 S23: 0.0508 REMARK 3 S31: -0.1213 S32: 0.1102 S33: -0.0625 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 416 D 439 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4778 20.5522 -20.6685 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.0244 REMARK 3 T33: 0.0522 T12: 0.0116 REMARK 3 T13: 0.0674 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.2422 L22: 0.6669 REMARK 3 L33: 2.1513 L12: 0.4152 REMARK 3 L13: -2.3870 L23: 0.0820 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0541 S13: 0.0672 REMARK 3 S21: -0.0252 S22: -0.0278 S23: 0.0310 REMARK 3 S31: 0.1351 S32: -0.0590 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 440 D 446 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0039 20.8605 -1.2834 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0651 REMARK 3 T33: 0.0388 T12: 0.0355 REMARK 3 T13: -0.0170 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1099 L22: 2.0440 REMARK 3 L33: 13.1008 L12: 0.0397 REMARK 3 L13: -1.1159 L23: 1.4422 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0104 S13: 0.0091 REMARK 3 S21: 0.0869 S22: 0.2074 S23: -0.0082 REMARK 3 S31: 0.5878 S32: 0.2912 S33: -0.1603 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 447 D 487 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5211 19.7599 18.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0593 REMARK 3 T33: 0.0179 T12: -0.0389 REMARK 3 T13: 0.0239 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.4422 L22: 0.6131 REMARK 3 L33: 2.5328 L12: 0.4975 REMARK 3 L13: -1.2498 L23: -0.5351 REMARK 3 S TENSOR REMARK 3 S11: -0.1489 S12: 0.2478 S13: 0.0019 REMARK 3 S21: 0.0152 S22: 0.0223 S23: 0.0412 REMARK 3 S31: 0.3120 S32: -0.2427 S33: 0.1267 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 488 D 509 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0595 27.8162 13.5588 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.0423 REMARK 3 T33: 0.0256 T12: 0.0047 REMARK 3 T13: 0.0157 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.4818 L22: 1.2603 REMARK 3 L33: 2.9322 L12: 0.2539 REMARK 3 L13: 0.1454 L23: 0.0492 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.1806 S13: 0.1499 REMARK 3 S21: -0.0257 S22: -0.0475 S23: 0.0515 REMARK 3 S31: -0.0273 S32: -0.1005 S33: 0.1050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5SUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000217707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928190 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 41.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES 0.1 M NACL 0.1 M LI2SO4 22 REMARK 280 -26% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.08700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 414 REMARK 465 GLY A 510 REMARK 465 SER B 414 REMARK 465 SER B 509 REMARK 465 GLY B 510 REMARK 465 SER C 414 REMARK 465 GLY C 510 REMARK 465 SER D 414 REMARK 465 SER D 415 REMARK 465 GLY D 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 460 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 476 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 493 80.36 -69.85 REMARK 500 ASP B 441 47.07 -86.83 REMARK 500 ASN D 493 82.47 -66.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 101 DBREF 5SUY A 416 510 UNP O14641 DVL2_HUMAN 416 510 DBREF 5SUY B 416 510 UNP O14641 DVL2_HUMAN 416 510 DBREF 5SUY C 416 510 UNP O14641 DVL2_HUMAN 416 510 DBREF 5SUY D 416 510 UNP O14641 DVL2_HUMAN 416 510 SEQADV 5SUY SER A 414 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER A 415 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER B 414 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER B 415 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER C 414 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER C 415 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER D 414 UNP O14641 EXPRESSION TAG SEQADV 5SUY SER D 415 UNP O14641 EXPRESSION TAG SEQRES 1 A 97 SER SER GLY LEU SER VAL HIS THR ASP MET ALA SER VAL SEQRES 2 A 97 THR LYS ALA MET ALA ALA PRO GLU SER GLY LEU GLU VAL SEQRES 3 A 97 ARG ASP ARG MET TRP LEU LYS ILE THR ILE PRO ASN ALA SEQRES 4 A 97 PHE LEU GLY SER ASP VAL VAL ASP TRP LEU TYR HIS HIS SEQRES 5 A 97 VAL GLU GLY PHE PRO GLU ARG ARG GLU ALA ARG LYS TYR SEQRES 6 A 97 ALA SER GLY LEU LEU LYS ALA GLY LEU ILE ARG HIS THR SEQRES 7 A 97 VAL ASN LYS ILE THR PHE SER GLU GLN CYS TYR TYR VAL SEQRES 8 A 97 PHE GLY ASP LEU SER GLY SEQRES 1 B 97 SER SER GLY LEU SER VAL HIS THR ASP MET ALA SER VAL SEQRES 2 B 97 THR LYS ALA MET ALA ALA PRO GLU SER GLY LEU GLU VAL SEQRES 3 B 97 ARG ASP ARG MET TRP LEU LYS ILE THR ILE PRO ASN ALA SEQRES 4 B 97 PHE LEU GLY SER ASP VAL VAL ASP TRP LEU TYR HIS HIS SEQRES 5 B 97 VAL GLU GLY PHE PRO GLU ARG ARG GLU ALA ARG LYS TYR SEQRES 6 B 97 ALA SER GLY LEU LEU LYS ALA GLY LEU ILE ARG HIS THR SEQRES 7 B 97 VAL ASN LYS ILE THR PHE SER GLU GLN CYS TYR TYR VAL SEQRES 8 B 97 PHE GLY ASP LEU SER GLY SEQRES 1 C 97 SER SER GLY LEU SER VAL HIS THR ASP MET ALA SER VAL SEQRES 2 C 97 THR LYS ALA MET ALA ALA PRO GLU SER GLY LEU GLU VAL SEQRES 3 C 97 ARG ASP ARG MET TRP LEU LYS ILE THR ILE PRO ASN ALA SEQRES 4 C 97 PHE LEU GLY SER ASP VAL VAL ASP TRP LEU TYR HIS HIS SEQRES 5 C 97 VAL GLU GLY PHE PRO GLU ARG ARG GLU ALA ARG LYS TYR SEQRES 6 C 97 ALA SER GLY LEU LEU LYS ALA GLY LEU ILE ARG HIS THR SEQRES 7 C 97 VAL ASN LYS ILE THR PHE SER GLU GLN CYS TYR TYR VAL SEQRES 8 C 97 PHE GLY ASP LEU SER GLY SEQRES 1 D 97 SER SER GLY LEU SER VAL HIS THR ASP MET ALA SER VAL SEQRES 2 D 97 THR LYS ALA MET ALA ALA PRO GLU SER GLY LEU GLU VAL SEQRES 3 D 97 ARG ASP ARG MET TRP LEU LYS ILE THR ILE PRO ASN ALA SEQRES 4 D 97 PHE LEU GLY SER ASP VAL VAL ASP TRP LEU TYR HIS HIS SEQRES 5 D 97 VAL GLU GLY PHE PRO GLU ARG ARG GLU ALA ARG LYS TYR SEQRES 6 D 97 ALA SER GLY LEU LEU LYS ALA GLY LEU ILE ARG HIS THR SEQRES 7 D 97 VAL ASN LYS ILE THR PHE SER GLU GLN CYS TYR TYR VAL SEQRES 8 D 97 PHE GLY ASP LEU SER GLY HET SO4 C 101 5 HET SO4 C 102 5 HET SO4 D 101 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *117(H2 O) HELIX 1 AA1 ASP A 422 ALA A 432 1 11 HELIX 2 AA2 GLY A 455 VAL A 466 1 12 HELIX 3 AA3 GLU A 471 ALA A 485 1 15 HELIX 4 AA4 ASP B 422 ALA B 432 1 11 HELIX 5 AA5 GLY B 455 VAL B 466 1 12 HELIX 6 AA6 GLU B 471 ALA B 485 1 15 HELIX 7 AA7 ASP C 422 ALA C 432 1 11 HELIX 8 AA8 GLY C 455 VAL C 466 1 12 HELIX 9 AA9 GLU C 471 ALA C 485 1 15 HELIX 10 AB1 ASP D 422 ALA D 432 1 11 HELIX 11 AB2 GLY D 455 VAL D 466 1 12 HELIX 12 AB3 GLU D 471 ALA D 485 1 15 SHEET 1 AA1 4 ARG A 440 ILE A 447 0 SHEET 2 AA1 4 MET B 443 LEU B 454 -1 O ILE B 447 N MET A 443 SHEET 3 AA1 4 TYR B 502 PHE B 505 -1 O TYR B 503 N PHE B 453 SHEET 4 AA1 4 ILE B 488 HIS B 490 -1 N ARG B 489 O VAL B 504 SHEET 1 AA2 3 PHE A 453 LEU A 454 0 SHEET 2 AA2 3 TYR A 502 PHE A 505 -1 O TYR A 503 N PHE A 453 SHEET 3 AA2 3 ILE A 488 HIS A 490 -1 N ARG A 489 O VAL A 504 SHEET 1 AA3 4 ILE C 488 HIS C 490 0 SHEET 2 AA3 4 TYR C 502 PHE C 505 -1 O VAL C 504 N ARG C 489 SHEET 3 AA3 4 MET C 443 LEU C 454 -1 N PHE C 453 O TYR C 503 SHEET 4 AA3 4 ARG D 440 ILE D 447 -1 O MET D 443 N ILE C 447 SHEET 1 AA4 3 PHE D 453 LEU D 454 0 SHEET 2 AA4 3 TYR D 502 PHE D 505 -1 O TYR D 503 N PHE D 453 SHEET 3 AA4 3 ILE D 488 HIS D 490 -1 N ARG D 489 O VAL D 504 SITE 1 AC1 6 ARG A 473 ARG A 476 ARG C 476 SER C 498 SITE 2 AC1 6 GLU C 499 GLN C 500 SITE 1 AC2 3 LYS C 494 ILE C 495 THR C 496 SITE 1 AC3 3 LYS D 494 ILE D 495 THR D 496 CRYST1 61.671 60.174 66.128 90.00 117.62 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016215 0.000000 0.008485 0.00000 SCALE2 0.000000 0.016618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017068 0.00000