HEADER CIRCADIAN CLOCK PROTEIN 07-AUG-16 5SVW TITLE LIGHT-STATE STRUCTURE OF ARABIDOPSIS THALIANA ZEITLUPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADAGIO PROTEIN 1; COMPND 3 CHAIN: B, A, C, D; COMPND 4 FRAGMENT: LOV DOMAIN (UNP RESIDUES 29-165); COMPND 5 SYNONYM: CLOCK-ASSOCIATED PAS PROTEIN ZTL,F-BOX ONLY PROTEIN 2B, COMPND 6 FBX2B,FLAVIN-BINDING KELCH REPEAT F-BOX PROTEIN 1-LIKE PROTEIN 2, COMPND 7 FKF1-LIKE PROTEIN 2,LOV KELCH PROTEIN 1,PROTEIN ZEITLUPE; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ADO1, FKL2, LKP1, ZTL, AT5G57360, MSF19.2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV, KINETICS, PAS DOMAIN, PHOTORECEPTOR, CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.ZOLTOWSKI,A.PUDASAINI REVDAT 7 04-OCT-23 5SVW 1 LINK REVDAT 6 25-DEC-19 5SVW 1 LINK REVDAT 5 28-MAR-18 5SVW 1 JRNL REVDAT 4 28-FEB-18 5SVW 1 JRNL REVDAT 3 27-SEP-17 5SVW 1 REMARK REVDAT 2 15-MAR-17 5SVW 1 JRNL REVDAT 1 08-MAR-17 5SVW 0 JRNL AUTH A.PUDASAINI,J.S.SHIM,Y.H.SONG,H.SHI,T.KIBA,D.E.SOMERS, JRNL AUTH 2 T.IMAIZUMI,B.D.ZOLTOWSKI JRNL TITL KINETICS OF THE LOV DOMAIN OF ZEITLUPE DETERMINE ITS JRNL TITL 2 CIRCADIAN FUNCTION INARABIDOPSIS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28244872 JRNL DOI 10.7554/ELIFE.21646 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 34582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6212 - 5.3810 0.81 2526 123 0.1895 0.2348 REMARK 3 2 5.3810 - 4.2724 0.86 2550 123 0.1448 0.2152 REMARK 3 3 4.2724 - 3.7328 0.84 2478 106 0.1482 0.2045 REMARK 3 4 3.7328 - 3.3916 0.68 1973 121 0.1605 0.2024 REMARK 3 5 3.3916 - 3.1486 0.90 2608 133 0.1600 0.2203 REMARK 3 6 3.1486 - 2.9631 0.91 2597 148 0.1566 0.2387 REMARK 3 7 2.9631 - 2.8147 0.91 2620 146 0.1619 0.2139 REMARK 3 8 2.8147 - 2.6922 0.92 2644 132 0.1741 0.2475 REMARK 3 9 2.6922 - 2.5886 0.92 2632 165 0.1703 0.2274 REMARK 3 10 2.5886 - 2.4993 0.93 2633 170 0.1865 0.2542 REMARK 3 11 2.4993 - 2.4211 0.92 2609 169 0.1843 0.2479 REMARK 3 12 2.4211 - 2.3519 0.89 2527 143 0.1937 0.2751 REMARK 3 13 2.3519 - 2.2900 0.83 2379 127 0.2129 0.2820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4171 REMARK 3 ANGLE : 1.645 5673 REMARK 3 CHIRALITY : 0.068 622 REMARK 3 PLANARITY : 0.008 730 REMARK 3 DIHEDRAL : 19.012 1563 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9773 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34852 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3D72 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M SODIUM REMARK 280 ACETATE TRIHYDRATE, 30% W/V PEG 4K, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.82600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.65200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.65200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.82600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 86.22100 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 467.78200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 TYR A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 GLY A 9 REMARK 465 ASN A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 HIS A 13 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 ASP A 132 REMARK 465 ILE A 133 REMARK 465 ASP A 134 REMARK 465 LEU A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 GLY C 1 REMARK 465 GLY C 2 REMARK 465 PRO C 3 REMARK 465 ILE C 4 REMARK 465 PRO C 5 REMARK 465 TYR C 6 REMARK 465 PRO C 7 REMARK 465 VAL C 8 REMARK 465 GLY C 9 REMARK 465 ASN C 10 REMARK 465 LEU C 11 REMARK 465 LEU C 12 REMARK 465 HIS C 13 REMARK 465 THR C 14 REMARK 465 ALA C 15 REMARK 465 ASP C 134 REMARK 465 LEU C 135 REMARK 465 GLY C 136 REMARK 465 PRO C 137 REMARK 465 GLY D 1 REMARK 465 GLY D 2 REMARK 465 PRO D 3 REMARK 465 ILE D 4 REMARK 465 PRO D 5 REMARK 465 TYR D 6 REMARK 465 PRO D 7 REMARK 465 VAL D 8 REMARK 465 GLY D 9 REMARK 465 ASN D 10 REMARK 465 LEU D 11 REMARK 465 LEU D 12 REMARK 465 HIS D 13 REMARK 465 THR D 14 REMARK 465 ALA D 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD12 ILE C 20 HE22 GLN C 126 1.17 REMARK 500 OD1 ASN C 53 O2' FMN C 5201 1.40 REMARK 500 HD12 ILE C 20 NE2 GLN C 126 1.50 REMARK 500 HE ARG A 66 O HOH A 5302 1.56 REMARK 500 O HOH B 5363 O HOH B 5364 1.97 REMARK 500 OD1 ASP C 99 OG SER C 101 2.04 REMARK 500 O HOH D 5342 O HOH D 5349 2.08 REMARK 500 O HOH B 5360 O HOH A 5352 2.12 REMARK 500 O HOH B 5339 O HOH A 5356 2.14 REMARK 500 O ASP B 99 O HOH B 5301 2.16 REMARK 500 O ASP B 116 O HOH B 5302 2.16 REMARK 500 O HOH C 5351 O HOH C 5357 2.17 REMARK 500 O HOH A 5365 O HOH A 5376 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 104 CG - SD - CE ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 28 36.75 70.18 REMARK 500 ASP B 116 104.52 -160.81 REMARK 500 ASP B 117 53.80 -147.14 REMARK 500 ASP C 116 172.17 157.31 REMARK 500 ASP C 117 49.82 -107.92 REMARK 500 ASP D 117 49.63 -154.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 116 ASP A 117 -30.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A5379 DISTANCE = 6.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 5201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SVG RELATED DB: PDB REMARK 900 RELATED ID: 5SVU RELATED DB: PDB REMARK 900 RELATED ID: 5SVV RELATED DB: PDB DBREF 5SVW B 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVW A 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVW C 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVW D 1 137 UNP Q94BT6 ADO1_ARATH 29 165 SEQADV 5SVW ILE B 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVW ARG B 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVW ILE A 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVW ARG A 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVW ILE C 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVW ARG C 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVW ILE D 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVW ARG D 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQRES 1 B 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 B 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 B 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 B 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 B 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 B 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 B 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 B 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 B 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 B 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 B 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 A 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 A 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 A 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 A 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 A 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 A 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 A 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 A 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 A 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 A 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 A 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 C 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 C 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 C 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 C 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 C 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 C 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 C 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 C 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 C 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 C 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 C 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 D 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 D 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 D 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 D 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 D 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 D 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 D 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 D 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 D 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 D 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 D 137 THR ASP ILE ASP LEU GLY PRO HET FMN B5201 50 HET FMN A5201 50 HET FMN C5201 50 HET FMN D5201 50 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *267(H2 O) HELIX 1 AA1 LEU B 11 ALA B 15 5 5 HELIX 2 AA2 ASN B 35 GLY B 43 1 9 HELIX 3 AA3 ARG B 45 LEU B 50 1 6 HELIX 4 AA4 ASN B 53 CYS B 59 5 7 HELIX 5 AA5 ASP B 72 GLU B 85 1 14 HELIX 6 AA6 ASN A 35 GLY A 43 1 9 HELIX 7 AA7 ARG A 45 LEU A 50 1 6 HELIX 8 AA8 ASN A 53 CYS A 59 5 7 HELIX 9 AA9 ASP A 72 GLU A 85 1 14 HELIX 10 AB1 ASN C 35 GLY C 43 1 9 HELIX 11 AB2 ARG C 45 LEU C 50 1 6 HELIX 12 AB3 ASN C 53 CYS C 59 5 7 HELIX 13 AB4 ASP C 72 GLY C 86 1 15 HELIX 14 AB5 ASN D 35 GLY D 43 1 9 HELIX 15 AB6 ARG D 45 LEU D 50 1 6 HELIX 16 AB7 ASN D 53 CYS D 59 5 7 HELIX 17 AB8 ASP D 72 GLY D 86 1 15 SHEET 1 AA1 5 ILE B 31 VAL B 34 0 SHEET 2 AA1 5 GLY B 18 ASP B 23 -1 N VAL B 21 O ILE B 32 SHEET 3 AA1 5 ILE B 119 ILE B 129 -1 O GLY B 124 N ILE B 20 SHEET 4 AA1 5 PRO B 102 TYR B 113 -1 N ILE B 112 O HIS B 121 SHEET 5 AA1 5 PHE B 89 PHE B 96 -1 N ASN B 95 O LEU B 103 SHEET 1 AA2 5 ILE A 31 VAL A 34 0 SHEET 2 AA2 5 GLY A 18 ASP A 23 -1 N VAL A 21 O ILE A 32 SHEET 3 AA2 5 ILE A 119 ILE A 129 -1 O GLY A 124 N ILE A 20 SHEET 4 AA2 5 PRO A 102 TYR A 113 -1 N ILE A 112 O HIS A 121 SHEET 5 AA2 5 PHE A 89 PHE A 96 -1 N ASN A 95 O LEU A 103 SHEET 1 AA3 5 ILE C 31 VAL C 34 0 SHEET 2 AA3 5 GLY C 18 ASP C 23 -1 N VAL C 21 O ILE C 32 SHEET 3 AA3 5 ILE C 119 GLU C 130 -1 O GLN C 126 N GLY C 18 SHEET 4 AA3 5 PRO C 102 TYR C 113 -1 N ILE C 112 O HIS C 121 SHEET 5 AA3 5 PHE C 89 PHE C 96 -1 N ASN C 95 O LEU C 103 SHEET 1 AA4 5 ILE D 31 VAL D 34 0 SHEET 2 AA4 5 GLY D 18 ASP D 23 -1 N VAL D 21 O ILE D 32 SHEET 3 AA4 5 ILE D 119 ILE D 129 -1 O GLY D 124 N ILE D 20 SHEET 4 AA4 5 PRO D 102 TYR D 113 -1 N ARG D 106 O PHE D 127 SHEET 5 AA4 5 PHE D 89 PHE D 96 -1 N ASN D 95 O LEU D 103 LINK SG ACYS B 54 C4A FMN B5201 1555 1555 2.04 LINK SG ACYS C 54 C4A FMN C5201 1555 1555 1.87 CISPEP 1 ASP B 116 ASP B 117 0 -16.66 CISPEP 2 ASP C 116 ASP C 117 0 -14.71 CISPEP 3 ASP D 116 ASP D 117 0 -13.68 SITE 1 AC1 21 ILE B 20 THR B 22 ASN B 53 CYS B 54 SITE 2 AC1 21 ARG B 55 LEU B 57 GLN B 58 VAL B 76 SITE 3 AC1 21 ILE B 83 LEU B 93 ASN B 95 ASN B 105 SITE 4 AC1 21 LEU B 109 ILE B 122 GLY B 124 GLN B 126 SITE 5 AC1 21 HOH B5314 HOH B5315 HOH B5326 HOH B5330 SITE 6 AC1 21 HOH B5345 SITE 1 AC2 24 ILE A 20 THR A 22 ASN A 53 CYS A 54 SITE 2 AC2 24 ARG A 55 GLN A 58 VAL A 76 ILE A 79 SITE 3 AC2 24 ARG A 80 ILE A 83 LEU A 93 ASN A 95 SITE 4 AC2 24 ASN A 105 LEU A 107 LEU A 109 ILE A 122 SITE 5 AC2 24 GLY A 124 GLN A 126 HOH A5310 HOH A5312 SITE 6 AC2 24 HOH A5347 ARG B 67 SER B 73 HOH B5340 SITE 1 AC3 22 THR D 22 ASN D 53 CYS D 54 ARG D 55 SITE 2 AC3 22 LEU D 57 GLN D 58 VAL D 76 ARG D 80 SITE 3 AC3 22 ILE D 83 LEU D 93 ASN D 95 ASN D 105 SITE 4 AC3 22 LEU D 107 LEU D 109 ILE D 122 GLN D 126 SITE 5 AC3 22 HOH D5302 HOH D5318 HOH D5321 HOH D5322 SITE 6 AC3 22 HOH D5323 HOH D5328 CRYST1 86.221 86.221 200.478 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011598 0.006696 0.000000 0.00000 SCALE2 0.000000 0.013392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004988 0.00000