data_5SWD # _entry.id 5SWD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SWD pdb_00005swd 10.2210/pdb5swd/pdb WWPDB D_1000223253 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '5E54 contains the same RNA in the ligand-free state' 5E54 unspecified PDB . 5SWE unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5SWD _pdbx_database_status.recvd_initial_deposition_date 2016-08-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 ? 'Wang, Y.-X.' 2 ? 'Liu, Y.' 3 ? 'Bhandari, Y.R.' 4 ? 'Conrad, C.E.' 5 ? 'Nelson, G.' 6 ? 'Li, C.' 7 ? 'Wendel, D.R.' 8 ? 'White, T.A.' 9 ? 'Barty, A.' 10 ? 'Tuckey, R.A.' 11 ? 'Zatsepin, N.A.' 12 ? 'Grant, T.D.' 13 ? 'Fromme, P.' 14 ? 'Tan, K.' 15 ? 'Ji, X.' 16 0000-0001-6942-1514 'Spence, J.C.H.' 17 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 541 _citation.language ? _citation.page_first 242 _citation.page_last 246 _citation.title 'Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature20599 _citation.pdbx_database_id_PubMed 27841871 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stagno, J.R.' 1 ? primary 'Liu, Y.' 2 ? primary 'Bhandari, Y.R.' 3 ? primary 'Conrad, C.E.' 4 ? primary 'Panja, S.' 5 ? primary 'Swain, M.' 6 ? primary 'Fan, L.' 7 ? primary 'Nelson, G.' 8 ? primary 'Li, C.' 9 ? primary 'Wendel, D.R.' 10 ? primary 'White, T.A.' 11 ? primary 'Coe, J.D.' 12 ? primary 'Wiedorn, M.O.' 13 ? primary 'Knoska, J.' 14 ? primary 'Oberthuer, D.' 15 ? primary 'Tuckey, R.A.' 16 ? primary 'Yu, P.' 17 ? primary 'Dyba, M.' 18 ? primary 'Tarasov, S.G.' 19 ? primary 'Weierstall, U.' 20 ? primary 'Grant, T.D.' 21 ? primary 'Schwieters, C.D.' 22 ? primary 'Zhang, J.' 23 ? primary ;Ferre-D'Amare, A.R. ; 24 ? primary 'Fromme, P.' 25 ? primary 'Draper, D.E.' 26 ? primary 'Liang, M.' 27 ? primary 'Hunter, M.S.' 28 ? primary 'Boutet, S.' 29 ? primary 'Tan, K.' 30 ? primary 'Zuo, X.' 31 ? primary 'Ji, X.' 32 0000-0001-6942-1514 primary 'Barty, A.' 33 ? primary 'Zatsepin, N.A.' 34 ? primary 'Chapman, H.N.' 35 ? primary 'Spence, J.C.' 36 ? primary 'Woodson, S.A.' 37 ? primary 'Wang, Y.X.' 38 ? # _cell.length_a 47.910 _cell.length_b 46.720 _cell.length_c 92.250 _cell.angle_alpha 90.000 _cell.angle_beta 94.060 _cell.angle_gamma 90.000 _cell.entry_id 5SWD _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 5SWD _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain' 22687.383 2 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5SWD _struct_ref.pdbx_db_accession 5SWD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5SWD A 1 ? 71 ? 5SWD 13 ? 83 ? 13 83 2 1 5SWD B 1 ? 71 ? 5SWD 13 ? 83 ? 13 83 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5SWD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, pH 6.5, 80 mM potassium chloride, 100 mM magnesium chloride, 12 mM spermine tetrahydrochloride, 65% v/v (+/-)-2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'CS-PAD CXI-1' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'KB mirror' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'FREE ELECTRON LASER' _diffrn_source.target ? _diffrn_source.type 'SLAC LCLS BEAMLINE CXI' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline CXI _diffrn_source.pdbx_synchrotron_site 'SLAC LCLS' # _reflns.B_iso_Wilson_estimate 80.9 _reflns.entry_id 5SWD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 31.06 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14357 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 346.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.49 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split 0.1410 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 1431 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 188.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split 0.8684 # _refine.entry_id 5SWD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 30.9200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6200 _refine.ls_number_reflns_obs 13212 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1969 _refine.ls_R_factor_R_work 0.1949 _refine.ls_wR_factor_R_work 0.2176 _refine.ls_R_factor_R_free 0.2294 _refine.ls_wR_factor_R_free 0.2579 _refine.ls_percent_reflns_R_free 5.5000 _refine.ls_number_reflns_R_free 768 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 90.5900 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.7300 _refine.aniso_B[2][2] 2.4100 _refine.aniso_B[3][3] 0.4000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.5800 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9660 _refine.correlation_coeff_Fo_to_Fc_free 0.9620 _refine.overall_SU_R_Cruickshank_DPI 0.6685 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.2762 _refine.pdbx_overall_ESU_R 0.6690 _refine.pdbx_overall_ESU_R_Free 0.2760 _refine.overall_SU_ML 0.3420 _refine.overall_SU_B 38.4070 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 5E54 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.6535 _refine.B_iso_max 219.210 _refine.B_iso_min 46.710 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 30.9200 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 2854 _refine_hist.pdbx_number_residues_total 133 _refine_hist.pdbx_B_iso_mean_ligand 85.09 _refine_hist.pdbx_B_iso_mean_solvent 70.49 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2826 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 3218 0.007 0.011 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 5012 1.524 1.289 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 540 0.101 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1391 0.010 0.020 ? ? 'X-RAY DIFFRACTION' r_scbond_it 3218 5.272 7.064 ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 'X-RAY DIFFRACTION' 1 1 'interatomic distance' A 3441 0.050 0.050 ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' 1 2 'interatomic distance' B 3441 0.050 0.050 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 2.5030 _refine_ls_shell.d_res_low 2.5680 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 73.3500 _refine_ls_shell.number_reflns_R_work 735 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.5480 _refine_ls_shell.R_factor_R_free 0.7350 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 779 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 0 A G 1 . A A 64 . A G 13 A A 76 0 ? 1 2 0 B G 1 . B A 64 . B G 13 B A 76 0 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 5SWD _struct.title 'Structure of the adenine riboswitch aptamer domain in an intermediate-bound state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5SWD _struct_keywords.text 'adenine riboswitch, purine riboswitch, ligand mixing, intermediate state, RNA, gene regulation, X-ray free electron laser' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 25 OP1 ? ? ? 1_555 D MG . MG ? ? A G 37 A MG 102 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc2 metalc ? ? A A 40 OP1 ? ? ? 1_555 E MG . MG ? ? A A 52 A MG 103 1_555 ? ? ? ? ? ? ? 1.800 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 205 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 B U 56 OP1 ? ? A MG 102 B U 68 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 B HOH 204 1_555 ? ? ? ? ? ? ? 1.875 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 B HOH 207 1_555 ? ? ? ? ? ? ? 1.964 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 201 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 207 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 B HOH 205 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 B HOH 206 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 B HOH 208 1_455 ? ? ? ? ? ? ? 1.733 ? ? metalc13 metalc ? ? B A 12 OP2 ? ? ? 1_555 F MG . MG ? ? B A 24 B MG 101 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 201 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 202 1_555 ? ? ? ? ? ? ? 1.877 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 203 1_555 ? ? ? ? ? ? ? 1.904 ? ? hydrog1 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog2 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 9 N1 A ? ? 1_555 A U 63 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 9 N6 A ? ? 1_555 A U 63 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog21 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog22 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog23 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog24 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog25 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog26 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog27 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog28 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog35 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog36 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 47 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 35 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 47 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 49 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 49 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog59 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 68 N3 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 68 O4 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 67 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 67 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 64 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 64 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 63 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 63 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B A 11 N6 ? ? ? 1_555 B U 62 O2 ? ? B A 23 B U 74 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog73 hydrog ? ? B A 11 N7 ? ? ? 1_555 B U 62 N3 ? ? B A 23 B U 74 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog74 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 16 N3 ? ? ? 1_555 B G 30 O6 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? B U 16 O2 ? ? ? 1_555 B G 30 N1 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog84 hydrog ? ? B A 17 N1 ? ? ? 1_555 B U 29 N3 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B A 17 N6 ? ? ? 1_555 B U 29 O4 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 19 N3 ? ? ? 1_555 B U 27 O4 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog89 hydrog ? ? B U 19 O2 ? ? ? 1_555 B U 27 N3 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog90 hydrog ? ? B A 21 N1 ? ? ? 1_555 B A 54 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog91 hydrog ? ? B A 21 N6 ? ? ? 1_555 B A 54 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog92 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 53 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog93 hydrog ? ? B U 22 O2 ? ? ? 1_555 B A 53 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog94 hydrog ? ? B A 23 N6 ? ? ? 1_555 B A 52 N1 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog95 hydrog ? ? B A 23 N7 ? ? ? 1_555 B A 52 N6 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog96 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 26 N2 ? ? ? 1_555 B A 54 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog103 hydrog ? ? B G 26 N3 ? ? ? 1_555 B A 54 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog104 hydrog ? ? B G 34 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 34 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 34 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B U 35 N3 ? ? ? 1_555 B A 40 N1 ? ? B U 47 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B U 35 O4 ? ? ? 1_555 B A 40 N6 ? ? B U 47 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B U 36 N3 ? ? ? 1_555 B U 63 O2 ? ? B U 48 B U 75 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog110 hydrog ? ? B U 37 N3 ? ? ? 1_555 B A 61 N1 ? ? B U 49 B A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 37 O4 ? ? ? 1_555 B A 61 N6 ? ? B U 49 B A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 60 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 60 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 60 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B A 43 N1 ? ? ? 1_555 B U 59 N3 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B A 43 N6 ? ? ? 1_555 B U 59 O4 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B A 44 N1 ? ? ? 1_555 B U 58 N3 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B A 44 N6 ? ? ? 1_555 B U 58 O4 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 45 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 45 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 45 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B A 46 N1 ? ? ? 1_555 B U 56 N3 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B A 46 N6 ? ? ? 1_555 B U 56 O4 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 47 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B G 47 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 47 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B C 49 O2 ? ? ? 1_555 B A 53 N6 ? ? B C 61 B A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADE 101 ? 7 'binding site for residue ADE A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 7 'binding site for residue MG A 103' AC4 Software B MG 101 ? 4 'binding site for residue MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 A A 9 ? A A 21 . ? 1_555 ? 2 AC1 7 U A 10 ? U A 22 . ? 1_555 ? 3 AC1 7 U A 36 ? U A 48 . ? 1_555 ? 4 AC1 7 U A 37 ? U A 49 . ? 1_555 ? 5 AC1 7 A A 61 ? A A 73 . ? 1_555 ? 6 AC1 7 U A 62 ? U A 74 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 204 . ? 1_555 ? 8 AC2 6 G A 25 ? G A 37 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 205 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 206 . ? 1_555 ? 11 AC2 6 U B 56 ? U B 68 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH B 204 . ? 1_555 ? 13 AC2 6 HOH H . ? HOH B 207 . ? 1_555 ? 14 AC3 7 U A 39 ? U A 51 . ? 1_555 ? 15 AC3 7 A A 40 ? A A 52 . ? 1_555 ? 16 AC3 7 HOH G . ? HOH A 201 . ? 1_555 ? 17 AC3 7 HOH G . ? HOH A 207 . ? 1_555 ? 18 AC3 7 HOH H . ? HOH B 205 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH B 206 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH B 208 . ? 1_455 ? 21 AC4 4 A B 12 ? A B 24 . ? 1_555 ? 22 AC4 4 HOH H . ? HOH B 201 . ? 1_555 ? 23 AC4 4 HOH H . ? HOH B 202 . ? 1_555 ? 24 AC4 4 HOH H . ? HOH B 203 . ? 1_555 ? # _atom_sites.entry_id 5SWD _atom_sites.fract_transf_matrix[1][1] 0.020872 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021404 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010867 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G A . n A 1 2 G 2 14 14 G G A . n A 1 3 G 3 15 15 G G A . n A 1 4 A 4 16 16 A A A . n A 1 5 A 5 17 17 A A A . n A 1 6 G 6 18 18 G G A . n A 1 7 A 7 19 19 A A A . n A 1 8 U 8 20 20 U U A . n A 1 9 A 9 21 21 A A A . n A 1 10 U 10 22 22 U U A . n A 1 11 A 11 23 23 A A A . n A 1 12 A 12 24 24 A A A . n A 1 13 U 13 25 25 U U A . n A 1 14 C 14 26 26 C C A . n A 1 15 C 15 27 27 C C A . n A 1 16 U 16 28 28 U U A . n A 1 17 A 17 29 29 A A A . n A 1 18 A 18 30 30 A A A . n A 1 19 U 19 31 31 U U A . n A 1 20 G 20 32 32 G G A . n A 1 21 A 21 33 33 A A A . n A 1 22 U 22 34 34 U U A . n A 1 23 A 23 35 35 A A A . n A 1 24 U 24 36 36 U U A . n A 1 25 G 25 37 37 G G A . n A 1 26 G 26 38 38 G G A . n A 1 27 U 27 39 39 U U A . n A 1 28 U 28 40 40 U U A . n A 1 29 U 29 41 41 U U A . n A 1 30 G 30 42 42 G G A . n A 1 31 G 31 43 43 G G A . n A 1 32 G 32 44 44 G G A . n A 1 33 A 33 45 45 A A A . n A 1 34 G 34 46 46 G G A . n A 1 35 U 35 47 47 U U A . n A 1 36 U 36 48 48 U U A . n A 1 37 U 37 49 49 U U A . n A 1 38 C 38 50 50 C C A . n A 1 39 U 39 51 51 U U A . n A 1 40 A 40 52 52 A A A . n A 1 41 C 41 53 53 C C A . n A 1 42 C 42 54 54 C C A . n A 1 43 A 43 55 55 A A A . n A 1 44 A 44 56 56 A A A . n A 1 45 G 45 57 57 G G A . n A 1 46 A 46 58 58 A A A . n A 1 47 G 47 59 59 G G A . n A 1 48 C 48 60 60 C C A . n A 1 49 C 49 61 61 C C A . n A 1 50 U 50 62 62 U U A . n A 1 51 U 51 63 63 U U A . n A 1 52 A 52 64 64 A A A . n A 1 53 A 53 65 65 A A A . n A 1 54 A 54 66 66 A A A . n A 1 55 C 55 67 67 C C A . n A 1 56 U 56 68 68 U U A . n A 1 57 C 57 69 69 C C A . n A 1 58 U 58 70 70 U U A . n A 1 59 U 59 71 71 U U A . n A 1 60 G 60 72 72 G G A . n A 1 61 A 61 73 73 A A A . n A 1 62 U 62 74 74 U U A . n A 1 63 U 63 75 75 U U A . n A 1 64 A 64 76 76 A A A . n A 1 65 U 65 77 77 U U A . n A 1 66 C 66 78 ? ? ? A . n A 1 67 U 67 79 ? ? ? A . n A 1 68 U 68 80 ? ? ? A . n A 1 69 C 69 81 ? ? ? A . n A 1 70 C 70 82 ? ? ? A . n A 1 71 C 71 83 ? ? ? A . n B 1 1 G 1 13 13 G G B . n B 1 2 G 2 14 14 G G B . n B 1 3 G 3 15 15 G G B . n B 1 4 A 4 16 16 A A B . n B 1 5 A 5 17 17 A A B . n B 1 6 G 6 18 18 G G B . n B 1 7 A 7 19 19 A A B . n B 1 8 U 8 20 20 U U B . n B 1 9 A 9 21 21 A A B . n B 1 10 U 10 22 22 U U B . n B 1 11 A 11 23 23 A A B . n B 1 12 A 12 24 24 A A B . n B 1 13 U 13 25 25 U U B . n B 1 14 C 14 26 26 C C B . n B 1 15 C 15 27 27 C C B . n B 1 16 U 16 28 28 U U B . n B 1 17 A 17 29 29 A A B . n B 1 18 A 18 30 30 A A B . n B 1 19 U 19 31 31 U U B . n B 1 20 G 20 32 32 G G B . n B 1 21 A 21 33 33 A A B . n B 1 22 U 22 34 34 U U B . n B 1 23 A 23 35 35 A A B . n B 1 24 U 24 36 36 U U B . n B 1 25 G 25 37 37 G G B . n B 1 26 G 26 38 38 G G B . n B 1 27 U 27 39 39 U U B . n B 1 28 U 28 40 40 U U B . n B 1 29 U 29 41 41 U U B . n B 1 30 G 30 42 42 G G B . n B 1 31 G 31 43 43 G G B . n B 1 32 G 32 44 44 G G B . n B 1 33 A 33 45 45 A A B . n B 1 34 G 34 46 46 G G B . n B 1 35 U 35 47 47 U U B . n B 1 36 U 36 48 48 U U B . n B 1 37 U 37 49 49 U U B . n B 1 38 C 38 50 50 C C B . n B 1 39 U 39 51 51 U U B . n B 1 40 A 40 52 52 A A B . n B 1 41 C 41 53 53 C C B . n B 1 42 C 42 54 54 C C B . n B 1 43 A 43 55 55 A A B . n B 1 44 A 44 56 56 A A B . n B 1 45 G 45 57 57 G G B . n B 1 46 A 46 58 58 A A B . n B 1 47 G 47 59 59 G G B . n B 1 48 C 48 60 60 C C B . n B 1 49 C 49 61 61 C C B . n B 1 50 U 50 62 62 U U B . n B 1 51 U 51 63 63 U U B . n B 1 52 A 52 64 64 A A B . n B 1 53 A 53 65 65 A A B . n B 1 54 A 54 66 66 A A B . n B 1 55 C 55 67 67 C C B . n B 1 56 U 56 68 68 U U B . n B 1 57 C 57 69 69 C C B . n B 1 58 U 58 70 70 U U B . n B 1 59 U 59 71 71 U U B . n B 1 60 G 60 72 72 G G B . n B 1 61 A 61 73 73 A A B . n B 1 62 U 62 74 74 U U B . n B 1 63 U 63 75 75 U U B . n B 1 64 A 64 76 76 A A B . n B 1 65 U 65 77 77 U U B . n B 1 66 C 66 78 78 C C B . n B 1 67 U 67 79 79 U U B . n B 1 68 U 68 80 80 U U B . n B 1 69 C 69 81 ? ? ? B . n B 1 70 C 70 82 ? ? ? B . n B 1 71 C 71 83 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADE 1 101 101 ADE A A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 2 MG MG A . F 3 MG 1 101 3 MG MG B . G 4 HOH 1 201 6 HOH HOH A . G 4 HOH 2 202 11 HOH HOH A . G 4 HOH 3 203 15 HOH HOH A . G 4 HOH 4 204 12 HOH HOH A . G 4 HOH 5 205 2 HOH HOH A . G 4 HOH 6 206 10 HOH HOH A . G 4 HOH 7 207 7 HOH HOH A . H 4 HOH 1 201 9 HOH HOH B . H 4 HOH 2 202 14 HOH HOH B . H 4 HOH 3 203 13 HOH HOH B . H 4 HOH 4 204 3 HOH HOH B . H 4 HOH 5 205 5 HOH HOH B . H 4 HOH 6 206 4 HOH HOH B . H 4 HOH 7 207 1 HOH HOH B . H 4 HOH 8 208 8 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,G 2 1 B,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 25 ? A G 37 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 76.1 ? 2 OP1 ? A G 25 ? A G 37 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 103.7 ? 3 O ? G HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 73.5 ? 4 OP1 ? A G 25 ? A G 37 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP1 ? B U 56 ? B U 68 ? 1_555 90.5 ? 5 O ? G HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP1 ? B U 56 ? B U 68 ? 1_555 77.5 ? 6 O ? G HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP1 ? B U 56 ? B U 68 ? 1_555 143.4 ? 7 OP1 ? A G 25 ? A G 37 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 166.1 ? 8 O ? G HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 92.8 ? 9 O ? G HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 80.8 ? 10 OP1 ? B U 56 ? B U 68 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 78.7 ? 11 OP1 ? A G 25 ? A G 37 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 85.7 ? 12 O ? G HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 152.5 ? 13 O ? G HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 131.7 ? 14 OP1 ? B U 56 ? B U 68 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 82.3 ? 15 O ? H HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 101.3 ? 16 OP1 ? A A 40 ? A A 52 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 201 ? 1_555 82.5 ? 17 OP1 ? A A 40 ? A A 52 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 109.3 ? 18 O ? G HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 207 ? 1_555 72.1 ? 19 OP1 ? A A 40 ? A A 52 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 205 ? 1_555 87.4 ? 20 O ? G HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 205 ? 1_555 86.7 ? 21 O ? G HOH . ? A HOH 207 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 205 ? 1_555 150.5 ? 22 OP1 ? A A 40 ? A A 52 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 152.4 ? 23 O ? G HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 75.7 ? 24 O ? G HOH . ? A HOH 207 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 80.1 ? 25 O ? H HOH . ? B HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 74.8 ? 26 OP1 ? A A 40 ? A A 52 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_455 128.6 ? 27 O ? G HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_455 146.5 ? 28 O ? G HOH . ? A HOH 207 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_455 84.2 ? 29 O ? H HOH . ? B HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_455 104.7 ? 30 O ? H HOH . ? B HOH 206 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_455 77.2 ? 31 OP2 ? B A 12 ? B A 24 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 201 ? 1_555 157.5 ? 32 OP2 ? B A 12 ? B A 24 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 202 ? 1_555 73.8 ? 33 O ? H HOH . ? B HOH 201 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 202 ? 1_555 84.0 ? 34 OP2 ? B A 12 ? B A 24 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 203 ? 1_555 103.0 ? 35 O ? H HOH . ? B HOH 201 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 203 ? 1_555 71.0 ? 36 O ? H HOH . ? B HOH 202 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 203 ? 1_555 86.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-23 2 'Structure model' 1 1 2017-01-25 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2018-02-14 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' reflns 2 3 'Structure model' reflns_shell 3 4 'Structure model' diffrn_source 4 5 'Structure model' audit_author 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' citation_author 8 5 'Structure model' database_2 9 5 'Structure model' diffrn_radiation_wavelength 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_ncs_dom_lim 13 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns.pdbx_R_split' 2 3 'Structure model' '_reflns_shell.pdbx_R_split' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_audit_author.identifier_ORCID' 5 5 'Structure model' '_citation_author.identifier_ORCID' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_symmetry' 39 5 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 40 5 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 41 5 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 42 5 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 43 5 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 44 5 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 45 5 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 46 5 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -2.7437 -0.0121 28.5524 0.0941 0.1413 0.1033 0.0387 -0.0269 0.0757 3.0175 1.3655 1.1423 -0.0517 -0.6103 0.4111 0.0841 -0.1055 0.0214 0.5586 0.4289 0.1040 -0.2960 -0.2571 -0.1125 'X-RAY DIFFRACTION' 2 ? refined 7.0972 -21.2493 23.2953 0.0746 0.2179 0.0848 0.0071 -0.0078 -0.1153 3.3817 1.4932 0.8662 -0.1576 -0.2733 -0.3329 0.0045 -0.0186 0.0142 0.7867 -0.4591 0.0152 -0.3224 0.0843 -0.0418 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 13 A 77 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 13 B 80 ? ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? 0.6.2 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? 0.6.2 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 13 ? ? OP3 A G 13 ? ? 1.485 1.607 -0.122 0.012 N 2 1 P B G 13 ? ? OP3 B G 13 ? ? 1.490 1.607 -0.117 0.012 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 78 ? A C 66 2 1 Y 1 A U 79 ? A U 67 3 1 Y 1 A U 80 ? A U 68 4 1 Y 1 A C 81 ? A C 69 5 1 Y 1 A C 82 ? A C 70 6 1 Y 1 A C 83 ? A C 71 7 1 Y 1 B C 81 ? B C 69 8 1 Y 1 B C 82 ? B C 70 9 1 Y 1 B C 83 ? B C 71 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 MG MG MG N N 129 U OP3 O N N 130 U P P N N 131 U OP1 O N N 132 U OP2 O N N 133 U "O5'" O N N 134 U "C5'" C N N 135 U "C4'" C N R 136 U "O4'" O N N 137 U "C3'" C N S 138 U "O3'" O N N 139 U "C2'" C N R 140 U "O2'" O N N 141 U "C1'" C N R 142 U N1 N N N 143 U C2 C N N 144 U O2 O N N 145 U N3 N N N 146 U C4 C N N 147 U O4 O N N 148 U C5 C N N 149 U C6 C N N 150 U HOP3 H N N 151 U HOP2 H N N 152 U "H5'" H N N 153 U "H5''" H N N 154 U "H4'" H N N 155 U "H3'" H N N 156 U "HO3'" H N N 157 U "H2'" H N N 158 U "HO2'" H N N 159 U "H1'" H N N 160 U H3 H N N 161 U H5 H N N 162 U H6 H N N 163 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 U OP3 P sing N N 134 U OP3 HOP3 sing N N 135 U P OP1 doub N N 136 U P OP2 sing N N 137 U P "O5'" sing N N 138 U OP2 HOP2 sing N N 139 U "O5'" "C5'" sing N N 140 U "C5'" "C4'" sing N N 141 U "C5'" "H5'" sing N N 142 U "C5'" "H5''" sing N N 143 U "C4'" "O4'" sing N N 144 U "C4'" "C3'" sing N N 145 U "C4'" "H4'" sing N N 146 U "O4'" "C1'" sing N N 147 U "C3'" "O3'" sing N N 148 U "C3'" "C2'" sing N N 149 U "C3'" "H3'" sing N N 150 U "O3'" "HO3'" sing N N 151 U "C2'" "O2'" sing N N 152 U "C2'" "C1'" sing N N 153 U "C2'" "H2'" sing N N 154 U "O2'" "HO2'" sing N N 155 U "C1'" N1 sing N N 156 U "C1'" "H1'" sing N N 157 U N1 C2 sing N N 158 U N1 C6 sing N N 159 U C2 O2 doub N N 160 U C2 N3 sing N N 161 U N3 C4 sing N N 162 U N3 H3 sing N N 163 U C4 O4 doub N N 164 U C4 C5 sing N N 165 U C5 C6 doub N N 166 U C5 H5 sing N N 167 U C6 H6 sing N N 168 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5SWD 'double helix' 5SWD 'a-form double helix' 5SWD 'hairpin loop' 5SWD 'mismatched base pair' 5SWD 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 7 1_555 A U 65 1_555 -0.742 0.230 -1.835 -24.700 -12.410 -3.302 1 A_A19:U77_A A 19 ? A 77 ? ? ? 1 A U 8 1_555 A A 64 1_555 -0.326 -0.174 -0.003 -2.413 -10.037 0.043 2 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 -0.263 -0.327 0.973 13.373 -4.474 -3.605 3 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 27 1_555 A U 19 1_555 -2.532 -1.950 0.303 -2.956 -20.084 16.208 4 A_U39:U31_A A 39 ? A 31 ? 16 1 1 A U 28 1_555 A A 18 1_555 0.022 -0.238 0.074 -9.796 -11.921 5.875 5 A_U40:A30_A A 40 ? A 30 ? 20 1 1 A U 29 1_555 A A 17 1_555 0.095 -0.296 -0.002 1.405 -5.735 2.564 6 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 30 1_555 A U 16 1_555 -2.625 -0.678 0.260 4.610 -8.527 -0.195 7 A_G42:U28_A A 42 ? A 28 ? 28 1 1 A G 31 1_555 A C 15 1_555 -0.268 -0.267 0.082 -0.536 -5.732 2.416 8 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A G 32 1_555 A C 14 1_555 -0.444 -0.321 -0.278 -6.835 -11.950 2.731 9 A_G44:C26_A A 44 ? A 26 ? 19 1 1 A A 33 1_555 A U 13 1_555 0.179 -0.292 0.043 -3.501 -2.226 1.746 10 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A G 34 1_555 A C 41 1_555 -0.636 -0.205 -0.231 -15.285 -7.879 1.463 11 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A U 35 1_555 A A 40 1_555 -0.065 -0.090 -0.021 12.645 3.711 5.328 12 A_U47:A52_A A 47 ? A 52 ? 20 1 1 A A 23 1_555 A A 52 1_555 -4.230 1.091 0.367 -7.282 1.476 -106.130 13 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A C 49 1_555 A G 25 1_555 0.080 -0.346 0.636 -1.691 -15.136 -5.579 14 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A U 22 1_555 A A 53 1_555 4.030 -1.664 -0.407 -5.790 -6.950 -102.299 15 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A U 37 1_555 A A 61 1_555 -0.111 -0.042 -0.052 -19.126 -8.389 12.043 16 A_U49:A73_A A 49 ? A 73 ? 20 1 1 A G 26 1_555 A C 48 1_555 0.128 -0.093 0.504 14.743 -14.651 -3.424 17 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A C 55 1_555 A G 47 1_555 0.109 -0.407 -0.111 10.583 -21.145 3.561 18 A_C67:G59_A A 67 ? A 59 ? 19 1 1 A U 56 1_555 A A 46 1_555 0.166 -0.295 0.306 -3.566 -8.752 2.766 19 A_U68:A58_A A 68 ? A 58 ? 20 1 1 A C 57 1_555 A G 45 1_555 0.210 -0.218 0.345 2.390 -11.851 0.284 20 A_C69:G57_A A 69 ? A 57 ? 19 1 1 A U 58 1_555 A A 44 1_555 -0.234 -0.334 0.584 -5.735 -9.728 -4.148 21 A_U70:A56_A A 70 ? A 56 ? 20 1 1 A U 59 1_555 A A 43 1_555 0.571 -0.160 0.282 4.353 -13.505 1.031 22 A_U71:A55_A A 71 ? A 55 ? 20 1 1 A G 60 1_555 A C 42 1_555 -0.291 -0.281 -0.109 6.373 -4.335 1.580 23 A_G72:C54_A A 72 ? A 54 ? 19 1 1 B A 4 1_555 B U 68 1_555 0.575 0.352 -0.667 -18.874 10.090 -3.232 24 B_A16:U80_B B 16 ? B 80 ? 20 1 1 B A 5 1_555 B U 67 1_555 -0.962 -0.392 -0.905 -14.259 -24.563 -9.415 25 B_A17:U79_B B 17 ? B 79 ? 20 1 1 B G 6 1_555 B C 66 1_555 -0.043 0.038 -0.403 -12.924 -24.789 1.175 26 B_G18:C78_B B 18 ? B 78 ? 19 1 1 B A 7 1_555 B U 65 1_555 -0.134 -0.395 -0.117 -5.859 -15.927 1.321 27 B_A19:U77_B B 19 ? B 77 ? 20 1 1 B U 8 1_555 B A 64 1_555 -0.380 -0.128 0.191 -10.669 -14.196 -0.360 28 B_U20:A76_B B 20 ? B 76 ? 20 1 1 B A 9 1_555 B U 63 1_555 -0.313 -0.275 0.760 5.041 -12.396 -3.620 29 B_A21:U75_B B 21 ? B 75 ? 20 1 1 B A 11 1_555 B U 62 1_555 -4.509 -2.929 -0.681 21.019 -9.987 -92.483 30 B_A23:U74_B B 23 ? B 74 ? 24 4 1 B U 37 1_555 B A 61 1_555 -0.053 -0.048 0.424 -20.561 -13.568 8.025 31 B_U49:A73_B B 49 ? B 73 ? 20 1 1 B C 42 1_555 B G 60 1_555 0.230 -0.289 -0.135 -9.924 -1.626 0.528 32 B_C54:G72_B B 54 ? B 72 ? 19 1 1 B A 43 1_555 B U 59 1_555 -0.564 -0.148 0.260 -6.384 -11.655 0.451 33 B_A55:U71_B B 55 ? B 71 ? 20 1 1 B A 44 1_555 B U 58 1_555 0.249 -0.346 0.560 5.114 -9.197 -4.759 34 B_A56:U70_B B 56 ? B 70 ? 20 1 1 B G 45 1_555 B C 57 1_555 -0.163 -0.210 0.308 -3.056 -12.225 -1.978 35 B_G57:C69_B B 57 ? B 69 ? 19 1 1 B A 46 1_555 B U 56 1_555 -0.110 -0.327 0.338 3.438 -10.073 -0.078 36 B_A58:U68_B B 58 ? B 68 ? 20 1 1 B G 47 1_555 B C 55 1_555 -0.149 -0.462 -0.057 -10.983 -21.572 1.439 37 B_G59:C67_B B 59 ? B 67 ? 19 1 1 B C 48 1_555 B G 26 1_555 -0.203 -0.085 0.559 -15.077 -15.653 -3.958 38 B_C60:G38_B B 60 ? B 38 ? 19 1 1 B C 49 1_555 B G 25 1_555 -0.035 -0.280 0.595 -1.934 -14.420 -6.451 39 B_C61:G37_B B 61 ? B 37 ? 19 1 1 B A 52 1_555 B A 23 1_555 4.231 1.057 0.337 8.374 0.406 -106.051 40 B_A64:A35_B B 64 ? B 35 ? 5 4 1 B U 27 1_555 B U 19 1_555 -2.581 -1.944 0.293 -3.748 -19.136 16.385 41 B_U39:U31_B B 39 ? B 31 ? 16 1 1 B U 28 1_555 B A 18 1_555 0.011 -0.252 0.062 -9.711 -11.624 4.384 42 B_U40:A30_B B 40 ? B 30 ? 20 1 1 B U 29 1_555 B A 17 1_555 0.059 -0.280 -0.010 1.403 -6.306 1.912 43 B_U41:A29_B B 41 ? B 29 ? 20 1 1 B G 30 1_555 B U 16 1_555 -2.581 -0.722 0.248 4.044 -7.976 -1.974 44 B_G42:U28_B B 42 ? B 28 ? 28 1 1 B G 31 1_555 B C 15 1_555 -0.217 -0.280 0.024 -1.698 -5.703 -0.365 45 B_G43:C27_B B 43 ? B 27 ? 19 1 1 B G 32 1_555 B C 14 1_555 -0.416 -0.349 -0.231 -5.936 -10.388 1.445 46 B_G44:C26_B B 44 ? B 26 ? 19 1 1 B A 33 1_555 B U 13 1_555 0.233 -0.308 0.127 -0.679 -1.671 1.830 47 B_A45:U25_B B 45 ? B 25 ? 20 1 1 B G 34 1_555 B C 41 1_555 -0.617 -0.187 -0.284 -18.530 -5.673 0.120 48 B_G46:C53_B B 46 ? B 53 ? 19 1 1 B U 35 1_555 B A 40 1_555 0.082 -0.099 0.023 11.155 4.681 3.810 49 B_U47:A52_B B 47 ? B 52 ? 20 1 1 B U 22 1_555 B A 53 1_555 4.063 -1.784 -0.384 -4.979 -6.284 -100.995 50 B_U34:A65_B B 34 ? B 65 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 0.731 -0.647 2.684 -13.155 14.121 34.934 -2.187 -2.225 1.912 21.606 20.129 39.764 1 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.631 -1.520 2.584 -2.677 8.091 31.053 -3.791 -1.486 2.072 14.768 4.886 32.174 2 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A U 27 1_555 A U 19 1_555 A U 28 1_555 A A 18 1_555 -0.652 -1.017 3.394 0.445 7.574 44.870 -1.992 0.883 3.184 9.840 -0.578 45.474 3 AA_U39U40:A30U31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A U 28 1_555 A A 18 1_555 A U 29 1_555 A A 17 1_555 -0.004 -1.814 3.084 2.945 1.401 23.650 -4.809 0.902 2.951 3.397 -7.141 23.871 4 AA_U40U41:A29A30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 29 1_555 A A 17 1_555 A G 30 1_555 A U 16 1_555 0.375 -2.010 3.051 -2.110 7.787 19.060 -8.342 -1.789 2.026 22.269 6.035 20.682 5 AA_U41G42:U28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 30 1_555 A U 16 1_555 A G 31 1_555 A C 15 1_555 0.240 -1.681 3.410 -0.940 4.437 40.540 -2.908 -0.449 3.210 6.379 1.352 40.782 6 AA_G42G43:C27U28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A G 31 1_555 A C 15 1_555 A G 32 1_555 A C 14 1_555 0.257 -1.948 3.419 3.458 9.044 28.523 -5.532 0.185 2.700 17.723 -6.776 30.089 7 AA_G43G44:C26C27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A G 32 1_555 A C 14 1_555 A A 33 1_555 A U 13 1_555 0.009 -1.795 3.153 -4.394 2.718 34.711 -3.363 -0.636 2.985 4.524 7.315 35.082 8 AA_G44A45:U25C26_AA A 44 ? A 26 ? A 45 ? A 25 ? 1 A A 33 1_555 A U 13 1_555 A G 34 1_555 A C 41 1_555 2.266 -0.734 3.404 11.659 12.674 47.035 -1.882 -1.753 3.543 15.294 -14.069 49.919 9 AA_A45G46:C53U25_AA A 45 ? A 25 ? A 46 ? A 53 ? 1 A G 34 1_555 A C 41 1_555 A U 35 1_555 A A 40 1_555 0.144 -0.295 2.673 -2.485 18.406 24.807 -3.382 -0.653 1.970 36.946 4.988 30.902 10 AA_G46U47:A52C53_AA A 46 ? A 53 ? A 47 ? A 52 ? 1 A A 23 1_555 A A 52 1_555 A C 49 1_555 A G 25 1_555 4.214 0.276 -3.724 -0.705 -4.903 135.116 0.114 -2.274 -3.739 -2.652 0.381 135.161 11 AA_A35C61:G37A64_AA A 35 ? A 64 ? A 61 ? A 37 ? 1 A C 49 1_555 A G 25 1_555 A U 22 1_555 A A 53 1_555 -5.494 -4.617 0.983 -4.315 -22.185 -114.313 2.772 -3.252 0.275 13.133 -2.554 -115.742 12 AA_C61U34:A65G37_AA A 61 ? A 37 ? A 34 ? A 65 ? 1 A G 26 1_555 A C 48 1_555 A C 55 1_555 A G 47 1_555 -1.646 -0.357 3.271 1.402 1.137 54.474 -0.459 1.882 3.223 1.242 -1.531 54.501 13 AA_G38C67:G59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A C 55 1_555 A G 47 1_555 A U 56 1_555 A A 46 1_555 -0.624 -1.845 3.511 -5.319 8.881 34.061 -4.344 0.230 3.011 14.745 8.830 35.555 14 AA_C67U68:A58G59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A U 56 1_555 A A 46 1_555 A C 57 1_555 A G 45 1_555 -0.305 -1.498 3.103 -0.254 -0.112 31.484 -2.742 0.518 3.110 -0.207 0.467 31.485 15 AA_U68C69:G57A58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A C 57 1_555 A G 45 1_555 A U 58 1_555 A A 44 1_555 -0.372 -1.590 3.444 -2.818 2.828 30.008 -3.638 0.121 3.304 5.432 5.412 30.267 16 AA_C69U70:A56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A U 58 1_555 A A 44 1_555 A U 59 1_555 A A 43 1_555 0.044 -1.278 2.980 2.032 -1.539 36.796 -1.829 0.183 3.027 -2.434 -3.214 36.881 17 AA_U70U71:A55A56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A U 59 1_555 A A 43 1_555 A G 60 1_555 A C 42 1_555 0.017 -1.531 3.201 1.851 7.409 25.870 -5.019 0.398 2.662 16.108 -4.024 26.955 18 AA_U71G72:C54A55_AA A 71 ? A 55 ? A 72 ? A 54 ? 1 B A 4 1_555 B U 68 1_555 B A 5 1_555 B U 67 1_555 -0.033 -1.683 3.495 1.998 15.926 23.732 -6.735 0.484 1.985 34.171 -4.287 28.586 19 BB_A16A17:U79U80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 B A 5 1_555 B U 67 1_555 B G 6 1_555 B C 66 1_555 0.846 -1.324 3.433 -4.166 15.600 35.785 -3.770 -1.742 2.551 23.943 6.393 39.151 20 BB_A17G18:C78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 B G 6 1_555 B C 66 1_555 B A 7 1_555 B U 65 1_555 0.022 -1.348 3.188 -3.017 4.036 30.151 -3.316 -0.609 2.970 7.691 5.749 30.559 21 BB_G18A19:U77C78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 B A 7 1_555 B U 65 1_555 B U 8 1_555 B A 64 1_555 0.469 -1.290 3.379 -0.529 13.368 32.936 -4.000 -0.844 2.664 22.459 0.889 35.480 22 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 B U 8 1_555 B A 64 1_555 B A 9 1_555 B U 63 1_555 0.612 -1.710 2.600 2.427 13.759 28.201 -4.933 -0.818 1.652 26.294 -4.637 31.409 23 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 B A 9 1_555 B U 63 1_555 B A 11 1_555 B U 62 1_555 -3.077 -2.848 3.090 2.430 12.557 -1.001 -14.481 -8.502 3.612 -83.984 16.254 -12.829 24 BB_A21A23:U74U75_BB B 21 ? B 75 ? B 23 ? B 74 ? 1 B A 11 1_555 B U 62 1_555 B U 37 1_555 B A 61 1_555 1.467 -2.514 4.013 -12.120 5.838 96.682 -1.790 -1.218 3.741 3.893 8.082 97.382 25 BB_A23U49:A73U74_BB B 23 ? B 74 ? B 49 ? B 73 ? 1 B U 37 1_555 B A 61 1_555 B C 42 1_555 B G 60 1_555 -0.912 -3.069 6.770 34.559 5.228 36.640 -4.356 5.963 4.100 6.738 -44.541 50.219 26 BB_U49C54:G72A73_BB B 49 ? B 73 ? B 54 ? B 72 ? 1 B C 42 1_555 B G 60 1_555 B A 43 1_555 B U 59 1_555 -0.027 -1.606 3.216 -1.180 5.596 25.332 -5.011 -0.243 2.800 12.557 2.648 25.959 27 BB_C54A55:U71G72_BB B 54 ? B 72 ? B 55 ? B 71 ? 1 B A 43 1_555 B U 59 1_555 B A 44 1_555 B U 58 1_555 -0.083 -1.304 2.978 -1.749 -2.091 35.873 -1.836 -0.096 3.047 -3.389 2.835 35.973 28 BB_A55A56:U70U71_BB B 55 ? B 71 ? B 56 ? B 70 ? 1 B A 44 1_555 B U 58 1_555 B G 45 1_555 B C 57 1_555 0.306 -1.599 3.454 3.162 3.198 30.323 -3.678 0.068 3.286 6.071 -6.003 30.647 29 BB_A56G57:C69U70_BB B 56 ? B 70 ? B 57 ? B 69 ? 1 B G 45 1_555 B C 57 1_555 B A 46 1_555 B U 56 1_555 0.241 -1.451 3.078 0.044 -0.750 32.595 -2.461 -0.423 3.110 -1.336 -0.078 32.604 30 BB_G57A58:U68C69_BB B 57 ? B 69 ? B 58 ? B 68 ? 1 B A 46 1_555 B U 56 1_555 B G 47 1_555 B C 55 1_555 0.625 -1.806 3.488 5.273 8.539 35.617 -4.021 -0.261 3.048 13.629 -8.416 36.960 31 BB_A58G59:C67U68_BB B 58 ? B 68 ? B 59 ? B 67 ? 1 B G 47 1_555 B C 55 1_555 B C 48 1_555 B G 26 1_555 1.701 -0.334 3.234 -1.154 2.004 54.830 -0.480 -1.913 3.187 2.175 1.253 54.875 32 BB_G59C60:G38C67_BB B 59 ? B 67 ? B 60 ? B 38 ? 1 B C 48 1_555 B G 26 1_555 B C 49 1_555 B G 25 1_555 -0.553 -0.907 3.114 -2.077 8.134 28.459 -3.353 0.677 2.786 16.108 4.114 29.647 33 BB_C60C61:G37G38_BB B 60 ? B 38 ? B 61 ? B 37 ? 1 B C 49 1_555 B G 25 1_555 B A 52 1_555 B A 23 1_555 -3.859 -0.344 4.090 -66.929 161.783 154.393 -0.604 1.751 4.244 80.948 33.488 178.910 34 BB_C61A64:A35G37_BB B 61 ? B 37 ? B 64 ? B 35 ? 1 B U 27 1_555 B U 19 1_555 B U 28 1_555 B A 18 1_555 -0.728 -0.974 3.384 0.626 6.974 45.038 -1.879 0.996 3.197 9.039 -0.812 45.551 35 BB_U39U40:A30U31_BB B 39 ? B 31 ? B 40 ? B 30 ? 1 B U 28 1_555 B A 18 1_555 B U 29 1_555 B A 17 1_555 -0.110 -1.677 3.087 2.937 1.155 26.500 -3.915 0.951 2.983 2.508 -6.379 26.684 36 BB_U40U41:A29A30_BB B 40 ? B 30 ? B 41 ? B 29 ? 1 B U 29 1_555 B A 17 1_555 B G 30 1_555 B U 16 1_555 0.360 -1.973 3.088 -2.324 7.218 19.617 -7.944 -1.803 2.174 20.235 6.514 21.018 37 BB_U41G42:U28A29_BB B 41 ? B 29 ? B 42 ? B 28 ? 1 B G 30 1_555 B U 16 1_555 B G 31 1_555 B C 15 1_555 0.224 -1.689 3.444 -0.066 4.198 41.489 -2.828 -0.321 3.265 5.908 0.093 41.692 38 BB_G42G43:C27U28_BB B 42 ? B 28 ? B 43 ? B 27 ? 1 B G 31 1_555 B C 15 1_555 B G 32 1_555 B C 14 1_555 0.256 -1.930 3.400 2.551 7.786 27.886 -5.501 0.030 2.782 15.731 -5.155 29.041 39 BB_G43G44:C26C27_BB B 43 ? B 27 ? B 44 ? B 26 ? 1 B G 32 1_555 B C 14 1_555 B A 33 1_555 B U 13 1_555 0.042 -1.833 3.114 -4.955 2.404 34.750 -3.367 -0.758 2.951 3.994 8.232 35.170 40 BB_G44A45:U25C26_BB B 44 ? B 26 ? B 45 ? B 25 ? 1 B A 33 1_555 B U 13 1_555 B G 34 1_555 B C 41 1_555 2.346 -0.751 3.510 14.866 11.927 47.511 -1.834 -1.526 3.763 14.158 -17.646 50.984 41 BB_A45G46:C53U25_BB B 45 ? B 25 ? B 46 ? B 53 ? 1 B G 34 1_555 B C 41 1_555 B U 35 1_555 B A 40 1_555 0.177 -0.306 2.671 -2.803 16.850 25.831 -3.165 -0.764 2.062 33.437 5.562 30.888 42 BB_G46U47:A52C53_BB B 46 ? B 53 ? B 47 ? B 52 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5E54 _pdbx_initial_refinement_model.details ? #