HEADER DE NOVO PROTEIN 08-AUG-16 5SWK TITLE CRYSTAL STRUCTURE OF P53 EPITOPE-SCAFFOLD BASED ON A INHIBITOR OF TITLE 2 CYSTEINE PROTEASES IN COMPLEX WITH HUMAN MDM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-150; COMPND 5 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING COMPND 6 PROTEIN MDM2; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DE NOVO PROTEIN BASED ON THE INHIBITOR AMOEBIASIN-1; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: CYSTEINE PROTEASE INHIBITOR 1,EHICP1,ICP-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 10 ORGANISM_TAXID: 5759; SOURCE 11 GENE: AMS, ICP1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDOMIMETICS, BIOSENSOR, SCAFFOLD, DESIGNED, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.JIMENEZ-SANDOVAL,L.G.BRIEBA REVDAT 4 04-OCT-23 5SWK 1 REMARK REVDAT 3 15-JAN-20 5SWK 1 REMARK REVDAT 2 01-MAY-19 5SWK 1 JRNL REVDAT 1 18-OCT-17 5SWK 0 JRNL AUTH P.JIMENEZ-SANDOVAL,E.A.MADRIGAL-CARRILLO, JRNL AUTH 2 H.A.SANTAMARIA-SUAREZ,D.MATURANA,I.RENTERIA-GONZALEZ, JRNL AUTH 3 C.G.BENITEZ-CARDOZA,A.TORRES-LARIOS,L.G.BRIEBA JRNL TITL MIMICKING A P53-MDM2 INTERACTION BASED ON A STABLE JRNL TITL 2 IMMUNOGLOBULIN-LIKE DOMAIN SCAFFOLD. JRNL REF PROTEINS V. 86 802 2018 JRNL REFN ESSN 1097-0134 JRNL PMID 29696695 JRNL DOI 10.1002/PROT.25519 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0049 - 5.0381 1.00 2762 170 0.2215 0.2512 REMARK 3 2 5.0381 - 3.9995 1.00 2609 140 0.1703 0.2069 REMARK 3 3 3.9995 - 3.4941 1.00 2574 134 0.1907 0.2153 REMARK 3 4 3.4941 - 3.1747 1.00 2583 131 0.2121 0.2337 REMARK 3 5 3.1747 - 2.9472 1.00 2532 140 0.2272 0.2476 REMARK 3 6 2.9472 - 2.7734 1.00 2550 130 0.2272 0.2345 REMARK 3 7 2.7734 - 2.6345 1.00 2506 145 0.2275 0.2562 REMARK 3 8 2.6345 - 2.5198 1.00 2521 143 0.2377 0.2792 REMARK 3 9 2.5198 - 2.4228 1.00 2510 129 0.2227 0.2482 REMARK 3 10 2.4228 - 2.3392 1.00 2522 138 0.2318 0.2446 REMARK 3 11 2.3392 - 2.2661 1.00 2499 132 0.2319 0.2638 REMARK 3 12 2.2661 - 2.2013 1.00 2509 124 0.2423 0.2965 REMARK 3 13 2.2013 - 2.1434 1.00 2519 110 0.2549 0.2959 REMARK 3 14 2.1434 - 2.0911 1.00 2481 143 0.2697 0.2991 REMARK 3 15 2.0911 - 2.0435 1.00 2507 142 0.2923 0.3088 REMARK 3 16 2.0435 - 2.0000 1.00 2463 159 0.3028 0.3142 REMARK 3 17 2.0000 - 1.9600 1.00 2488 132 0.3102 0.3642 REMARK 3 18 1.9600 - 1.9231 1.00 2484 132 0.3297 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2960 REMARK 3 ANGLE : 0.832 4031 REMARK 3 CHIRALITY : 0.033 471 REMARK 3 PLANARITY : 0.005 501 REMARK 3 DIHEDRAL : 11.945 1033 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000222782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 61.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : 0.16000 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 2.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: MODIFIED 3EQS AND 3M86 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL 0.1 M HEPES PH 7.5 1.6 M REMARK 280 (NH4)2SO4, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.42000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.68050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.68050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.63000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.68050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.68050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.21000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.68050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.68050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.63000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.68050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.68050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.21000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 CYS A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ILE A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 25 REMARK 465 THR A 26 REMARK 465 ASN A 111 REMARK 465 GLN A 112 REMARK 465 GLN A 113 REMARK 465 GLU A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 ASP A 117 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 SER A 121 REMARK 465 VAL A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 ARG A 126 REMARK 465 CYS A 127 REMARK 465 HIS A 128 REMARK 465 LEU A 129 REMARK 465 GLU A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 ASP A 134 REMARK 465 GLN A 135 REMARK 465 LYS A 136 REMARK 465 ASP A 137 REMARK 465 LEU A 138 REMARK 465 VAL A 139 REMARK 465 GLN A 140 REMARK 465 GLU A 141 REMARK 465 LEU A 142 REMARK 465 GLN A 143 REMARK 465 GLU A 144 REMARK 465 GLU A 145 REMARK 465 LYS A 146 REMARK 465 PRO A 147 REMARK 465 SER A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 CYS B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 ASN B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 9 REMARK 465 THR B 10 REMARK 465 ASP B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 ILE B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 SER B 22 REMARK 465 GLU B 23 REMARK 465 GLN B 24 REMARK 465 GLU B 25 REMARK 465 ASN B 111 REMARK 465 GLN B 112 REMARK 465 GLN B 113 REMARK 465 GLU B 114 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 ASP B 117 REMARK 465 SER B 118 REMARK 465 GLY B 119 REMARK 465 THR B 120 REMARK 465 SER B 121 REMARK 465 VAL B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 ASN B 125 REMARK 465 ARG B 126 REMARK 465 CYS B 127 REMARK 465 HIS B 128 REMARK 465 LEU B 129 REMARK 465 GLU B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 SER B 133 REMARK 465 ASP B 134 REMARK 465 GLN B 135 REMARK 465 LYS B 136 REMARK 465 ASP B 137 REMARK 465 LEU B 138 REMARK 465 VAL B 139 REMARK 465 GLN B 140 REMARK 465 GLU B 141 REMARK 465 LEU B 142 REMARK 465 GLN B 143 REMARK 465 GLU B 144 REMARK 465 GLU B 145 REMARK 465 LYS B 146 REMARK 465 PRO B 147 REMARK 465 SER B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 GLY C -2 REMARK 465 PRO C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 54 REMARK 465 PRO C 55 REMARK 465 GLY C 56 REMARK 465 ILE C 57 REMARK 465 SER C 58 REMARK 465 GLY C 59 REMARK 465 GLY D -2 REMARK 465 PRO D -1 REMARK 465 HIS D 0 REMARK 465 ALA D 54 REMARK 465 PRO D 55 REMARK 465 GLY D 56 REMARK 465 ILE D 57 REMARK 465 SER D 58 REMARK 465 GLY D 59 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 36 CE NZ REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 VAL A 108 CG1 CG2 REMARK 470 VAL A 109 CG1 CG2 REMARK 470 VAL A 110 CG1 CG2 REMARK 470 THR B 26 OG1 CG2 REMARK 470 LEU B 27 CD1 CD2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 SER C 2 OG REMARK 470 THR C 13 OG1 CG2 REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 LYS C 20 CD CE NZ REMARK 470 GLU C 40 CG CD OE1 OE2 REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 SER C 60 OG REMARK 470 LYS C 63 CD CE NZ REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 GLN C 72 CG CD OE1 NE2 REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 ARG C 83 NE CZ NH1 NH2 REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 103 CD CE NZ REMARK 470 GLU D 40 CG CD OE1 OE2 REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 SER D 60 OG REMARK 470 LYS D 67 CD CE NZ REMARK 470 GLU D 75 CG CD OE1 OE2 REMARK 470 LYS D 77 CE NZ REMARK 470 ARG D 83 NE CZ NH1 NH2 REMARK 470 LYS D 103 CD CE NZ REMARK 470 GLN D 107 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 77 15.68 -145.15 REMARK 500 SER C 39 66.37 -156.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 202 DBREF 5SWK A 1 150 UNP Q00987 MDM2_HUMAN 1 150 DBREF 5SWK B 1 150 UNP Q00987 MDM2_HUMAN 1 150 DBREF 5SWK C -2 107 PDB 5SWK 5SWK -2 107 DBREF 5SWK D -2 107 PDB 5SWK 5SWK -2 107 SEQADV 5SWK GLY A -2 UNP Q00987 EXPRESSION TAG SEQADV 5SWK PRO A -1 UNP Q00987 EXPRESSION TAG SEQADV 5SWK HIS A 0 UNP Q00987 EXPRESSION TAG SEQADV 5SWK GLY B -2 UNP Q00987 EXPRESSION TAG SEQADV 5SWK PRO B -1 UNP Q00987 EXPRESSION TAG SEQADV 5SWK HIS B 0 UNP Q00987 EXPRESSION TAG SEQRES 1 A 153 GLY PRO HIS MET CYS ASN THR ASN MET SER VAL PRO THR SEQRES 2 A 153 ASP GLY ALA VAL THR THR SER GLN ILE PRO ALA SER GLU SEQRES 3 A 153 GLN GLU THR LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS SEQRES 4 A 153 LEU LEU LYS SER VAL GLY ALA GLN LYS ASP THR TYR THR SEQRES 5 A 153 MET LYS GLU VAL LEU PHE TYR LEU GLY GLN TYR ILE MET SEQRES 6 A 153 THR LYS ARG LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL SEQRES 7 A 153 TYR CYS SER ASN ASP LEU LEU GLY ASP LEU PHE GLY VAL SEQRES 8 A 153 PRO SER PHE SER VAL LYS GLU HIS ARG LYS ILE TYR THR SEQRES 9 A 153 MET ILE TYR ARG ASN LEU VAL VAL VAL ASN GLN GLN GLU SEQRES 10 A 153 SER SER ASP SER GLY THR SER VAL SER GLU ASN ARG CYS SEQRES 11 A 153 HIS LEU GLU GLY GLY SER ASP GLN LYS ASP LEU VAL GLN SEQRES 12 A 153 GLU LEU GLN GLU GLU LYS PRO SER SER SER SEQRES 1 B 153 GLY PRO HIS MET CYS ASN THR ASN MET SER VAL PRO THR SEQRES 2 B 153 ASP GLY ALA VAL THR THR SER GLN ILE PRO ALA SER GLU SEQRES 3 B 153 GLN GLU THR LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS SEQRES 4 B 153 LEU LEU LYS SER VAL GLY ALA GLN LYS ASP THR TYR THR SEQRES 5 B 153 MET LYS GLU VAL LEU PHE TYR LEU GLY GLN TYR ILE MET SEQRES 6 B 153 THR LYS ARG LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL SEQRES 7 B 153 TYR CYS SER ASN ASP LEU LEU GLY ASP LEU PHE GLY VAL SEQRES 8 B 153 PRO SER PHE SER VAL LYS GLU HIS ARG LYS ILE TYR THR SEQRES 9 B 153 MET ILE TYR ARG ASN LEU VAL VAL VAL ASN GLN GLN GLU SEQRES 10 B 153 SER SER ASP SER GLY THR SER VAL SER GLU ASN ARG CYS SEQRES 11 B 153 HIS LEU GLU GLY GLY SER ASP GLN LYS ASP LEU VAL GLN SEQRES 12 B 153 GLU LEU GLN GLU GLU LYS PRO SER SER SER SEQRES 1 C 110 GLY PRO HIS MET SER LEU THR GLU ASP ASN ASN ASN THR SEQRES 2 C 110 THR ILE THR ILE ALA LYS GLY GLU ASN LYS GLU ILE ILE SEQRES 3 C 110 LEU HIS GLY ASN PRO THR THR GLY TYR SER TRP VAL VAL SEQRES 4 C 110 ASP SER SER GLU GLY LEU SER ASN THR VAL GLU TYR VAL SEQRES 5 C 110 ALA ASP GLN HIS ALA PRO GLY ILE SER GLY SER GLY GLY SEQRES 6 C 110 LYS TYR HIS ILE LYS ILE THR GLY THR GLN THR GLY GLU SEQRES 7 C 110 GLY LYS ILE VAL LEU VAL TYR ARG ARG THR SER PHE ALA SEQRES 8 C 110 GLU TYR TRP ASN LEU LEU SER PRO ASP ARG THR PHE THR SEQRES 9 C 110 LEU LYS VAL ASN VAL GLN SEQRES 1 D 110 GLY PRO HIS MET SER LEU THR GLU ASP ASN ASN ASN THR SEQRES 2 D 110 THR ILE THR ILE ALA LYS GLY GLU ASN LYS GLU ILE ILE SEQRES 3 D 110 LEU HIS GLY ASN PRO THR THR GLY TYR SER TRP VAL VAL SEQRES 4 D 110 ASP SER SER GLU GLY LEU SER ASN THR VAL GLU TYR VAL SEQRES 5 D 110 ALA ASP GLN HIS ALA PRO GLY ILE SER GLY SER GLY GLY SEQRES 6 D 110 LYS TYR HIS ILE LYS ILE THR GLY THR GLN THR GLY GLU SEQRES 7 D 110 GLY LYS ILE VAL LEU VAL TYR ARG ARG THR SER PHE ALA SEQRES 8 D 110 GLU TYR TRP ASN LEU LEU SER PRO ASP ARG THR PHE THR SEQRES 9 D 110 LEU LYS VAL ASN VAL GLN HET CL A 201 1 HET CL A 202 1 HET SO4 B 201 10 HET CL B 202 1 HET CL B 203 1 HET CL B 204 1 HET CL B 205 1 HET SO4 C 201 5 HET CL D 201 1 HET GOL D 202 6 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL 7(CL 1-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *157(H2 O) HELIX 1 AA1 LYS A 31 SER A 40 1 10 HELIX 2 AA2 THR A 49 LYS A 64 1 16 HELIX 3 AA3 ASP A 80 GLY A 87 1 8 HELIX 4 AA4 GLU A 95 ARG A 105 1 11 HELIX 5 AA5 LYS B 31 VAL B 41 1 11 HELIX 6 AA6 MET B 50 LYS B 64 1 15 HELIX 7 AA7 ASP B 80 GLY B 87 1 8 HELIX 8 AA8 GLU B 95 ARG B 105 1 11 HELIX 9 AA9 THR C 4 ASN C 8 5 5 HELIX 10 AB1 ASN C 27 GLY C 31 5 5 HELIX 11 AB2 SER C 86 LEU C 93 1 8 HELIX 12 AB3 THR D 4 ASN D 8 5 5 HELIX 13 AB4 ASN D 27 GLY D 31 5 5 HELIX 14 AB5 SER D 86 LEU D 93 1 8 SHEET 1 AA1 2 VAL A 28 PRO A 30 0 SHEET 2 AA1 2 LEU A 107 VAL A 109 -1 O VAL A 108 N ARG A 29 SHEET 1 AA2 2 ILE A 74 TYR A 76 0 SHEET 2 AA2 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 AA3 3 TYR B 48 THR B 49 0 SHEET 2 AA3 3 LEU B 27 PRO B 30 -1 N VAL B 28 O TYR B 48 SHEET 3 AA3 3 LEU B 107 VAL B 109 -1 O VAL B 108 N ARG B 29 SHEET 1 AA4 2 ILE B 74 TYR B 76 0 SHEET 2 AA4 2 SER B 90 SER B 92 -1 O PHE B 91 N VAL B 75 SHEET 1 AA5 4 THR C 10 ILE C 14 0 SHEET 2 AA5 4 ARG D 98 VAL D 106 1 O ASN D 105 N ILE C 12 SHEET 3 AA5 4 GLY C 74 ARG C 83 -1 N LEU C 80 O PHE D 100 SHEET 4 AA5 4 SER C 33 GLU C 40 -1 N ASP C 37 O VAL C 79 SHEET 1 AA6 3 ASN C 19 GLY C 26 0 SHEET 2 AA6 3 GLY C 62 GLY C 70 -1 O TYR C 64 N LEU C 24 SHEET 3 AA6 3 LEU C 42 ALA C 50 -1 N GLU C 47 O HIS C 65 SHEET 1 AA7 4 THR D 10 ALA D 15 0 SHEET 2 AA7 4 ARG C 98 GLN C 107 1 N ASN C 105 O ILE D 12 SHEET 3 AA7 4 GLY D 74 ARG D 83 -1 O LEU D 80 N PHE C 100 SHEET 4 AA7 4 SER D 33 GLU D 40 -1 N SER D 38 O VAL D 79 SHEET 1 AA8 3 ASN D 19 GLY D 26 0 SHEET 2 AA8 3 GLY D 62 GLY D 70 -1 O TYR D 64 N LEU D 24 SHEET 3 AA8 3 LEU D 42 ALA D 50 -1 N GLU D 47 O HIS D 65 SITE 1 AC1 3 LYS A 45 ASP A 46 THR A 47 SITE 1 AC2 2 GLN A 71 HIS A 73 SITE 1 AC3 5 LYS B 94 GLU B 95 HIS B 96 ARG B 97 SITE 2 AC3 5 LYS B 98 SITE 1 AC4 2 ASP B 46 THR B 47 SITE 1 AC5 2 MET B 62 HOH B 329 SITE 1 AC6 2 GLU B 95 LYS B 98 SITE 1 AC7 2 GLN B 71 HIS B 73 SITE 1 AC8 5 GLU C 40 GLY C 41 GLY D 41 HOH D 302 SITE 2 AC8 5 HOH D 325 SITE 1 AC9 1 THR D 11 SITE 1 AD1 4 THR C 73 LYS D 16 GLN D 72 THR D 73 CRYST1 87.361 87.361 160.840 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006217 0.00000