HEADER HYDROLASE 09-AUG-16 5SXH TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 5 EC: 3.5.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 5 10-JAN-24 5SXH 1 SOURCE REMARK LINK SITE REVDAT 5 2 1 CRYST1 ATOM REVDAT 4 04-OCT-23 5SXH 1 LINK REVDAT 3 25-DEC-19 5SXH 1 COMPND HETNAM REVDAT 2 18-APR-18 5SXH 1 COMPND REMARK HETNAM REVDAT 1 27-DEC-17 5SXH 0 JRNL AUTH K.SHI,O.DEMIR,M.A.CARPENTER,J.WAGNER,K.KURAHASHI,R.S.HARRIS, JRNL AUTH 2 R.E.AMARO,H.AIHARA JRNL TITL CONFORMATIONAL SWITCH REGULATES THE DNA CYTOSINE DEAMINASE JRNL TITL 2 ACTIVITY OF HUMAN APOBEC3B. JRNL REF SCI REP V. 7 17415 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29234087 JRNL DOI 10.1038/S41598-017-17694-3 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 32213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5700 - 4.0700 0.98 2626 144 0.1561 0.1583 REMARK 3 2 4.0700 - 3.2300 0.99 2583 124 0.1520 0.1909 REMARK 3 3 3.2300 - 2.8300 0.98 2549 133 0.1745 0.2164 REMARK 3 4 2.8300 - 2.5700 0.99 2550 144 0.1811 0.1945 REMARK 3 5 2.5700 - 2.3800 0.99 2563 132 0.1808 0.2316 REMARK 3 6 2.3800 - 2.2400 0.98 2521 126 0.1946 0.2442 REMARK 3 7 2.2400 - 2.1300 0.99 2559 128 0.2054 0.2593 REMARK 3 8 2.1300 - 2.0400 0.99 2550 117 0.2107 0.2538 REMARK 3 9 2.0400 - 1.9600 1.00 2579 148 0.2409 0.2810 REMARK 3 10 1.9600 - 1.8900 0.98 2528 119 0.2797 0.3196 REMARK 3 11 1.8900 - 1.8300 0.98 2470 153 0.2997 0.2990 REMARK 3 12 1.8300 - 1.7800 0.98 2524 143 0.3188 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3002 REMARK 3 ANGLE : 0.762 4070 REMARK 3 CHIRALITY : 0.050 414 REMARK 3 PLANARITY : 0.007 532 REMARK 3 DIHEDRAL : 12.221 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9086 1.8899 0.1168 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1975 REMARK 3 T33: 0.1885 T12: -0.0057 REMARK 3 T13: -0.0179 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.4921 L22: 2.0653 REMARK 3 L33: 1.2278 L12: -0.3224 REMARK 3 L13: -0.2455 L23: 0.4483 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.2184 S13: -0.0460 REMARK 3 S21: -0.0379 S22: -0.0124 S23: -0.0794 REMARK 3 S31: 0.0448 S32: 0.0452 S33: -0.0160 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6651 8.2784 5.5899 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.2003 REMARK 3 T33: 0.2450 T12: -0.0101 REMARK 3 T13: -0.0401 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.1498 L22: 1.8344 REMARK 3 L33: 3.0151 L12: 0.9151 REMARK 3 L13: -1.8478 L23: -1.6032 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0979 S13: 0.0184 REMARK 3 S21: -0.0197 S22: -0.0231 S23: -0.1985 REMARK 3 S31: 0.0527 S32: 0.1155 S33: 0.0366 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4192 11.4315 5.7484 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.1568 REMARK 3 T33: 0.1943 T12: 0.0032 REMARK 3 T13: -0.0078 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.3085 L22: 1.8140 REMARK 3 L33: 2.3234 L12: -0.5423 REMARK 3 L13: 0.3639 L23: 0.8246 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.0221 S13: 0.0300 REMARK 3 S21: -0.0803 S22: -0.0655 S23: 0.0931 REMARK 3 S31: -0.1328 S32: -0.0427 S33: 0.1252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2370 -3.6077 36.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.2091 REMARK 3 T33: 0.2172 T12: -0.0101 REMARK 3 T13: -0.0316 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.1347 L22: 3.3264 REMARK 3 L33: 2.7960 L12: -0.1597 REMARK 3 L13: -0.5495 L23: -0.7153 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: -0.0625 S13: -0.1814 REMARK 3 S21: -0.0806 S22: -0.0863 S23: -0.1186 REMARK 3 S31: 0.1876 S32: -0.0788 S33: 0.2253 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7474 -4.4636 41.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.2733 REMARK 3 T33: 0.2431 T12: 0.0144 REMARK 3 T13: 0.0057 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.1593 L22: 6.0315 REMARK 3 L33: 0.6779 L12: -2.3561 REMARK 3 L13: -0.6173 L23: -0.9014 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: -0.2888 S13: -0.1140 REMARK 3 S21: 0.2264 S22: 0.0838 S23: 0.2447 REMARK 3 S31: -0.0549 S32: -0.0943 S33: 0.0453 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 266 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4853 3.3959 36.5349 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.3019 REMARK 3 T33: 0.2353 T12: 0.0051 REMARK 3 T13: -0.0317 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 5.0761 L22: 2.2319 REMARK 3 L33: 2.7684 L12: -1.6550 REMARK 3 L13: -1.8286 L23: 1.1751 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.2844 S13: 0.0660 REMARK 3 S21: -0.0084 S22: -0.0305 S23: 0.1725 REMARK 3 S31: 0.0330 S32: -0.2514 S33: 0.0086 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3229 4.5148 30.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.2014 REMARK 3 T33: 0.1902 T12: 0.0122 REMARK 3 T13: 0.0164 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.1164 L22: 1.6352 REMARK 3 L33: 1.7338 L12: 0.0171 REMARK 3 L13: 0.8962 L23: -0.4212 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.0849 S13: -0.0361 REMARK 3 S21: -0.0511 S22: -0.0812 S23: -0.0424 REMARK 3 S31: -0.0223 S32: -0.0002 S33: 0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 190 through 224 or REMARK 3 resid 233 through 301 or resid 303 REMARK 3 through 314 or resid 316 through 378 or REMARK 3 resid 401 through 402)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 190 and (name N or REMARK 3 name CA or name C or name O )) or resid REMARK 3 191 through 301 or resid 303 through 314 REMARK 3 or resid 316 through 378 or resid 401 REMARK 3 through 402)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 75.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 ASN A 225 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 LYS A 230 REMARK 465 MET A 231 REMARK 465 SER B 186 REMARK 465 GLU B 187 REMARK 465 ILE B 188 REMARK 465 LEU B 189 REMARK 465 ASP B 224 REMARK 465 ASN B 225 REMARK 465 GLY B 226 REMARK 465 THR B 227 REMARK 465 SER B 228 REMARK 465 VAL B 229 REMARK 465 LYS B 230 REMARK 465 MET B 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 190 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 191 O HOH B 502 1.49 REMARK 500 HG1 THR B 337 OE1 GLU B 340 1.53 REMARK 500 O PRO A 269 HD1 HIS A 302 1.56 REMARK 500 HH TYR A 191 O HOH A 503 1.60 REMARK 500 O HOH A 588 O HOH A 611 2.06 REMARK 500 OE2 GLU A 219 OH TYR A 343 2.08 REMARK 500 O HOH A 518 O HOH A 534 2.09 REMARK 500 O HOH B 501 O HOH B 506 2.10 REMARK 500 O HOH B 591 O HOH B 592 2.16 REMARK 500 O HOH B 547 O HOH B 592 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 501 O HOH A 511 2655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 233 85.50 55.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 119.2 REMARK 620 3 CYS A 289 SG 109.9 113.6 REMARK 620 4 HOH A 504 O 98.1 108.8 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 253 ND1 REMARK 620 2 CYS B 284 SG 114.5 REMARK 620 3 CYS B 289 SG 105.1 120.0 REMARK 620 4 HOH B 570 O 93.7 100.0 120.9 REMARK 620 N 1 2 3 DBREF 5SXH A 191 378 UNP Q9UH17 ABC3B_HUMAN 191 378 DBREF 5SXH B 191 378 UNP Q9UH17 ABC3B_HUMAN 191 378 SEQADV 5SXH SER A 186 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH GLU A 187 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH ILE A 188 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH LEU A 189 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH ARG A 190 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5SXH SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5SXH LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5SXH A UNP Q9UH17 ALA 242 DELETION SEQADV 5SXH A UNP Q9UH17 LYS 243 DELETION SEQADV 5SXH A UNP Q9UH17 ASN 244 DELETION SEQADV 5SXH A UNP Q9UH17 LEU 245 DELETION SEQADV 5SXH A UNP Q9UH17 LEU 246 DELETION SEQADV 5SXH A UNP Q9UH17 CYS 247 DELETION SEQADV 5SXH A UNP Q9UH17 GLY 248 DELETION SEQADV 5SXH A UNP Q9UH17 PHE 249 DELETION SEQADV 5SXH SER A 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5SXH LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5SXH SER B 186 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH GLU B 187 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH ILE B 188 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH LEU B 189 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH ARG B 190 UNP Q9UH17 EXPRESSION TAG SEQADV 5SXH SER B 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5SXH SER B 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5SXH LYS B 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5SXH B UNP Q9UH17 ALA 242 DELETION SEQADV 5SXH B UNP Q9UH17 LYS 243 DELETION SEQADV 5SXH B UNP Q9UH17 ASN 244 DELETION SEQADV 5SXH B UNP Q9UH17 LEU 245 DELETION SEQADV 5SXH B UNP Q9UH17 LEU 246 DELETION SEQADV 5SXH B UNP Q9UH17 CYS 247 DELETION SEQADV 5SXH B UNP Q9UH17 GLY 248 DELETION SEQADV 5SXH B UNP Q9UH17 PHE 249 DELETION SEQADV 5SXH SER B 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5SXH LYS B 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQRES 1 A 185 SER GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 185 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 185 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 185 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 185 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 185 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 185 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 185 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 185 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 185 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 185 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 185 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 185 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 185 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 185 ILE LEU GLN SEQRES 1 B 185 SER GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 B 185 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 B 185 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 B 185 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 B 185 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 B 185 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 B 185 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 B 185 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 B 185 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 B 185 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 B 185 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 B 185 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 B 185 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 B 185 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 B 185 ILE LEU GLN HET ZN A 401 1 HET EDO A 402 10 HET EDO A 403 10 HET ZN B 401 1 HET EDO B 402 10 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *207(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 HIS A 253 VAL A 262 1 10 HELIX 3 AA3 PRO A 263 GLN A 266 5 4 HELIX 4 AA4 GLY A 288 ASN A 300 1 13 HELIX 5 AA5 LEU A 318 ALA A 329 1 12 HELIX 6 AA6 THR A 337 VAL A 349 1 13 HELIX 7 AA7 GLY A 361 GLN A 378 1 18 HELIX 8 AA8 ASP B 194 ASN B 203 1 10 HELIX 9 AA9 HIS B 253 GLN B 266 1 14 HELIX 10 AB1 GLY B 288 ASN B 300 1 13 HELIX 11 AB2 LEU B 318 ALA B 329 1 12 HELIX 12 AB3 THR B 337 VAL B 349 1 13 HELIX 13 AB4 GLY B 361 GLN B 378 1 18 SHEET 1 AA1 5 GLN A 233 CYS A 239 0 SHEET 2 AA1 5 TYR A 215 ARG A 222 -1 N LEU A 216 O LEU A 238 SHEET 3 AA1 5 TYR A 273 TRP A 281 -1 O PHE A 278 N CYS A 217 SHEET 4 AA1 5 VAL A 303 ARG A 311 1 O LYS A 308 N TRP A 277 SHEET 5 AA1 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 SHEET 1 AA2 5 HIS B 234 CYS B 239 0 SHEET 2 AA2 5 TYR B 215 ARG B 222 -1 N LEU B 216 O LEU B 238 SHEET 3 AA2 5 TYR B 273 TRP B 281 -1 O ARG B 274 N GLU B 221 SHEET 4 AA2 5 VAL B 303 ARG B 311 1 O LYS B 308 N TRP B 277 SHEET 5 AA2 5 GLN B 332 ILE B 335 1 O SER B 334 N ALA B 309 LINK ND1 HIS A 253 ZN ZN A 401 1555 1555 2.04 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 289 ZN ZN A 401 1555 1555 2.24 LINK ZN ZN A 401 O HOH A 504 1555 1555 2.33 LINK ND1 HIS B 253 ZN ZN B 401 1555 1555 2.03 LINK SG CYS B 284 ZN ZN B 401 1555 1555 2.40 LINK SG CYS B 289 ZN ZN B 401 1555 1555 2.32 LINK ZN ZN B 401 O HOH B 570 1555 1555 2.42 CRYST1 44.390 50.990 77.410 90.00 101.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022528 0.000000 0.004772 0.00000 SCALE2 0.000000 0.019612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013205 0.00000