HEADER TRANSFERASE 16-AUG-16 5T0K TITLE STRUCTURE OF G9A SET-DOMAIN WITH H3K9M MUTANT PEPTIDE AND SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE EHMT2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EUCHROMATIC HISTONE-LYSINE N-METHYLTRANSFERASE 2,HLA-B- COMPND 5 ASSOCIATED TRANSCRIPT 8,HISTONE H3-K9 METHYLTRANSFERASE 3,H3-K9- COMPND 6 HMTASE 3,LYSINE N-METHYLTRANSFERASE 1C,PROTEIN G9A; COMPND 7 EC: 2.1.1.-,2.1.1.43; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: H3K9 MUTANT PEPTIDE; COMPND 11 CHAIN: P, Q; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EHMT2, BAT8, C6ORF30, G9A, KMT1C, NG36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HISTONE METHYLTRANSFERASE, SET DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,L.TONG REVDAT 4 04-OCT-23 5T0K 1 LINK REVDAT 3 04-DEC-19 5T0K 1 REMARK REVDAT 2 20-SEP-17 5T0K 1 REMARK REVDAT 1 05-OCT-16 5T0K 0 JRNL AUTH C.M.SHAN,J.WANG,K.XU,H.CHEN,J.X.YUE,S.ANDREWS,J.J.MORESCO, JRNL AUTH 2 J.R.YATES,P.L.NAGY,L.TONG,S.JIA JRNL TITL A HISTONE H3K9M MUTATION TRAPS HISTONE METHYLTRANSFERASE JRNL TITL 2 CLR4 TO PREVENT HETEROCHROMATIN SPREADING. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27648579 JRNL DOI 10.7554/ELIFE.17903 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 71258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4117 - 4.0927 0.98 5160 147 0.1510 0.1732 REMARK 3 2 4.0927 - 3.2487 0.99 5022 144 0.1477 0.1877 REMARK 3 3 3.2487 - 2.8381 1.00 5014 147 0.1692 0.1938 REMARK 3 4 2.8381 - 2.5786 0.99 4993 143 0.1706 0.1695 REMARK 3 5 2.5786 - 2.3938 0.99 4947 144 0.1666 0.1836 REMARK 3 6 2.3938 - 2.2526 1.00 4980 143 0.1665 0.2191 REMARK 3 7 2.2526 - 2.1398 0.99 4947 144 0.1667 0.1868 REMARK 3 8 2.1398 - 2.0467 0.99 4922 141 0.1727 0.2136 REMARK 3 9 2.0467 - 1.9679 1.00 4952 139 0.1704 0.2084 REMARK 3 10 1.9679 - 1.9000 1.00 4903 144 0.1729 0.2029 REMARK 3 11 1.9000 - 1.8406 1.00 4962 143 0.1848 0.2044 REMARK 3 12 1.8406 - 1.7880 1.00 4951 146 0.1872 0.2277 REMARK 3 13 1.7880 - 1.7409 1.00 4921 135 0.1938 0.2325 REMARK 3 14 1.7409 - 1.6984 0.93 4588 136 0.2052 0.2276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4584 REMARK 3 ANGLE : 1.037 6198 REMARK 3 CHIRALITY : 0.045 662 REMARK 3 PLANARITY : 0.004 810 REMARK 3 DIHEDRAL : 14.460 1724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 704U REMARK 200 DATA SCALING SOFTWARE : HKL-2000 704U REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 2O8J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE (PH 7.5), 18% REMARK 280 (W/V) PEG3350, 0.2 M NAF, AND 5% (V/V) ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.55050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.57150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.15350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.57150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.55050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.15350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 913 REMARK 465 ARG A 914 REMARK 465 ALA A 915 REMARK 465 ILE A 916 REMARK 465 ARG A 917 REMARK 465 THR A 918 REMARK 465 GLU A 919 REMARK 465 ASN A 1091 REMARK 465 LYS A 1092 REMARK 465 ASP A 1093 REMARK 465 GLY A 1094 REMARK 465 ARG A 1188 REMARK 465 LEU A 1189 REMARK 465 ALA A 1190 REMARK 465 ARG A 1191 REMARK 465 LEU A 1192 REMARK 465 ASP A 1193 REMARK 465 ASN B 913 REMARK 465 ARG B 914 REMARK 465 ALA B 915 REMARK 465 ILE B 916 REMARK 465 ARG B 917 REMARK 465 THR B 918 REMARK 465 GLU B 919 REMARK 465 LYS B 920 REMARK 465 GLN B 1004 REMARK 465 GLU B 1005 REMARK 465 PHE B 1006 REMARK 465 ASN B 1007 REMARK 465 LYS B 1008 REMARK 465 ILE B 1009 REMARK 465 GLU B 1010 REMARK 465 ASP B 1193 REMARK 465 ALA P 1 REMARK 465 ARG P 2 REMARK 465 GLY P 13 REMARK 465 LYS P 14 REMARK 465 ALA P 15 REMARK 465 ALA Q 1 REMARK 465 ARG Q 2 REMARK 465 GLY Q 13 REMARK 465 LYS Q 14 REMARK 465 ALA Q 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY P 12 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1724 O HOH A 1725 1.88 REMARK 500 O HOH B 1739 O HOH B 1740 1.95 REMARK 500 O HOH A 1648 O HOH A 1664 1.96 REMARK 500 O HOH A 1471 O HOH A 1637 1.97 REMARK 500 O HOH B 1544 O HOH B 1591 1.99 REMARK 500 O HOH A 1405 O HOH A 1439 2.01 REMARK 500 O HOH A 1411 O HOH A 1655 2.02 REMARK 500 O HOH A 1684 O HOH A 1716 2.02 REMARK 500 O HOH A 1671 O HOH A 1722 2.03 REMARK 500 N THR Q 3 O HOH Q 101 2.06 REMARK 500 NH2 ARG B 924 O HOH B 1401 2.08 REMARK 500 O HOH B 1681 O HOH B 1697 2.09 REMARK 500 O HOH B 1664 O HOH B 1691 2.10 REMARK 500 O ASP A 1090 O HOH A 1401 2.10 REMARK 500 O HOH B 1706 O HOH B 1730 2.11 REMARK 500 N GLY P 12 O HOH P 101 2.12 REMARK 500 N LYS A 920 O HOH A 1402 2.12 REMARK 500 NH1 ARG B 924 O HOH B 1402 2.13 REMARK 500 NE2 GLN B 1019 O HOH B 1403 2.13 REMARK 500 OD1 ASP B 999 O HOH B 1404 2.14 REMARK 500 O HOH B 1634 O HOH Q 107 2.14 REMARK 500 O THR P 3 O HOH P 102 2.14 REMARK 500 O HOH A 1582 O HOH B 1504 2.15 REMARK 500 O HOH A 1524 O HOH A 1700 2.17 REMARK 500 O HOH A 1614 O HOH A 1689 2.18 REMARK 500 O HOH A 1485 O HOH A 1513 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1456 O HOH B 1524 4455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 949 32.56 -92.83 REMARK 500 ASP A 978 -149.51 -116.09 REMARK 500 ILE A 992 -59.80 77.81 REMARK 500 ASN A1029 47.58 -106.41 REMARK 500 ARG A1030 40.34 -144.34 REMARK 500 ILE A1064 -63.42 -101.95 REMARK 500 ASN A1106 -161.99 -113.45 REMARK 500 ASP A1116 73.95 -111.42 REMARK 500 MET A1126 -91.14 -129.36 REMARK 500 ASP B 925 102.60 -167.07 REMARK 500 ASP B 978 -134.28 -142.71 REMARK 500 ILE B 992 -52.34 68.82 REMARK 500 ILE B1064 -61.13 -109.22 REMARK 500 ASN B1106 -162.07 -110.89 REMARK 500 ASP B1116 73.52 -114.29 REMARK 500 MET B1126 -96.07 -128.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1725 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1726 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1727 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B1744 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 987 SG 113.9 REMARK 620 3 CYS A1017 SG 109.0 113.1 REMARK 620 4 CYS A1021 SG 106.1 98.6 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 976 SG 106.2 REMARK 620 3 CYS A 980 SG 107.9 107.5 REMARK 620 4 CYS A 985 SG 110.7 108.6 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 980 SG REMARK 620 2 CYS A1017 SG 111.5 REMARK 620 3 CYS A1023 SG 105.2 107.8 REMARK 620 4 CYS A1027 SG 112.4 106.7 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1115 SG REMARK 620 2 CYS A1168 SG 114.2 REMARK 620 3 CYS A1170 SG 107.3 105.4 REMARK 620 4 CYS A1175 SG 105.2 108.9 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 976 SG 107.2 REMARK 620 3 CYS B 980 SG 107.7 103.9 REMARK 620 4 CYS B 985 SG 112.1 110.7 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 987 SG 112.0 REMARK 620 3 CYS B1017 SG 109.3 114.2 REMARK 620 4 CYS B1021 SG 105.9 98.8 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 980 SG REMARK 620 2 CYS B1017 SG 111.8 REMARK 620 3 CYS B1023 SG 102.9 106.7 REMARK 620 4 CYS B1027 SG 112.3 106.6 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1115 SG REMARK 620 2 CYS B1168 SG 112.8 REMARK 620 3 CYS B1170 SG 107.8 105.1 REMARK 620 4 CYS B1175 SG 105.5 110.5 115.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 1304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T0M RELATED DB: PDB DBREF 5T0K A 913 1193 UNP Q96KQ7 EHMT2_HUMAN 879 1159 DBREF 5T0K B 913 1193 UNP Q96KQ7 EHMT2_HUMAN 879 1159 DBREF 5T0K P 1 15 PDB 5T0K 5T0K 1 15 DBREF 5T0K Q 1 15 PDB 5T0K 5T0K 1 15 SEQRES 1 A 281 ASN ARG ALA ILE ARG THR GLU LYS ILE ILE CYS ARG ASP SEQRES 2 A 281 VAL ALA ARG GLY TYR GLU ASN VAL PRO ILE PRO CYS VAL SEQRES 3 A 281 ASN GLY VAL ASP GLY GLU PRO CYS PRO GLU ASP TYR LYS SEQRES 4 A 281 TYR ILE SER GLU ASN CYS GLU THR SER THR MET ASN ILE SEQRES 5 A 281 ASP ARG ASN ILE THR HIS LEU GLN HIS CYS THR CYS VAL SEQRES 6 A 281 ASP ASP CYS SER SER SER ASN CYS LEU CYS GLY GLN LEU SEQRES 7 A 281 SER ILE ARG CYS TRP TYR ASP LYS ASP GLY ARG LEU LEU SEQRES 8 A 281 GLN GLU PHE ASN LYS ILE GLU PRO PRO LEU ILE PHE GLU SEQRES 9 A 281 CYS ASN GLN ALA CYS SER CYS TRP ARG ASN CYS LYS ASN SEQRES 10 A 281 ARG VAL VAL GLN SER GLY ILE LYS VAL ARG LEU GLN LEU SEQRES 11 A 281 TYR ARG THR ALA LYS MET GLY TRP GLY VAL ARG ALA LEU SEQRES 12 A 281 GLN THR ILE PRO GLN GLY THR PHE ILE CYS GLU TYR VAL SEQRES 13 A 281 GLY GLU LEU ILE SER ASP ALA GLU ALA ASP VAL ARG GLU SEQRES 14 A 281 ASP ASP SER TYR LEU PHE ASP LEU ASP ASN LYS ASP GLY SEQRES 15 A 281 GLU VAL TYR CYS ILE ASP ALA ARG TYR TYR GLY ASN ILE SEQRES 16 A 281 SER ARG PHE ILE ASN HIS LEU CYS ASP PRO ASN ILE ILE SEQRES 17 A 281 PRO VAL ARG VAL PHE MET LEU HIS GLN ASP LEU ARG PHE SEQRES 18 A 281 PRO ARG ILE ALA PHE PHE SER SER ARG ASP ILE ARG THR SEQRES 19 A 281 GLY GLU GLU LEU GLY PHE ASP TYR GLY ASP ARG PHE TRP SEQRES 20 A 281 ASP ILE LYS SER LYS TYR PHE THR CYS GLN CYS GLY SER SEQRES 21 A 281 GLU LYS CYS LYS HIS SER ALA GLU ALA ILE ALA LEU GLU SEQRES 22 A 281 GLN SER ARG LEU ALA ARG LEU ASP SEQRES 1 B 281 ASN ARG ALA ILE ARG THR GLU LYS ILE ILE CYS ARG ASP SEQRES 2 B 281 VAL ALA ARG GLY TYR GLU ASN VAL PRO ILE PRO CYS VAL SEQRES 3 B 281 ASN GLY VAL ASP GLY GLU PRO CYS PRO GLU ASP TYR LYS SEQRES 4 B 281 TYR ILE SER GLU ASN CYS GLU THR SER THR MET ASN ILE SEQRES 5 B 281 ASP ARG ASN ILE THR HIS LEU GLN HIS CYS THR CYS VAL SEQRES 6 B 281 ASP ASP CYS SER SER SER ASN CYS LEU CYS GLY GLN LEU SEQRES 7 B 281 SER ILE ARG CYS TRP TYR ASP LYS ASP GLY ARG LEU LEU SEQRES 8 B 281 GLN GLU PHE ASN LYS ILE GLU PRO PRO LEU ILE PHE GLU SEQRES 9 B 281 CYS ASN GLN ALA CYS SER CYS TRP ARG ASN CYS LYS ASN SEQRES 10 B 281 ARG VAL VAL GLN SER GLY ILE LYS VAL ARG LEU GLN LEU SEQRES 11 B 281 TYR ARG THR ALA LYS MET GLY TRP GLY VAL ARG ALA LEU SEQRES 12 B 281 GLN THR ILE PRO GLN GLY THR PHE ILE CYS GLU TYR VAL SEQRES 13 B 281 GLY GLU LEU ILE SER ASP ALA GLU ALA ASP VAL ARG GLU SEQRES 14 B 281 ASP ASP SER TYR LEU PHE ASP LEU ASP ASN LYS ASP GLY SEQRES 15 B 281 GLU VAL TYR CYS ILE ASP ALA ARG TYR TYR GLY ASN ILE SEQRES 16 B 281 SER ARG PHE ILE ASN HIS LEU CYS ASP PRO ASN ILE ILE SEQRES 17 B 281 PRO VAL ARG VAL PHE MET LEU HIS GLN ASP LEU ARG PHE SEQRES 18 B 281 PRO ARG ILE ALA PHE PHE SER SER ARG ASP ILE ARG THR SEQRES 19 B 281 GLY GLU GLU LEU GLY PHE ASP TYR GLY ASP ARG PHE TRP SEQRES 20 B 281 ASP ILE LYS SER LYS TYR PHE THR CYS GLN CYS GLY SER SEQRES 21 B 281 GLU LYS CYS LYS HIS SER ALA GLU ALA ILE ALA LEU GLU SEQRES 22 B 281 GLN SER ARG LEU ALA ARG LEU ASP SEQRES 1 P 15 ALA ARG THR LYS GLN THR ALA ARG MET SER THR GLY GLY SEQRES 2 P 15 LYS ALA SEQRES 1 Q 15 ALA ARG THR LYS GLN THR ALA ARG MET SER THR GLY GLY SEQRES 2 Q 15 LYS ALA HET ZN A1300 1 HET ZN A1301 1 HET ZN A1302 1 HET ZN A1303 1 HET SAM A1304 27 HET ZN B1300 1 HET ZN B1301 1 HET ZN B1302 1 HET ZN B1303 1 HET SAM B1304 27 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 5 ZN 8(ZN 2+) FORMUL 9 SAM 2(C15 H22 N6 O5 S) FORMUL 15 HOH *688(H2 O) HELIX 1 AA1 ASN A 967 LEU A 971 5 5 HELIX 2 AA2 CYS A 985 SER A 991 1 7 HELIX 3 AA3 VAL A 1031 GLY A 1035 5 5 HELIX 4 AA4 ASP A 1074 ASP A 1078 1 5 HELIX 5 AA5 ILE A 1107 ILE A 1111 5 5 HELIX 6 AA6 GLY A 1155 SER A 1163 1 9 HELIX 7 AA7 SER A 1178 SER A 1187 1 10 HELIX 8 AA8 ILE B 921 ASP B 925 5 5 HELIX 9 AA9 ASN B 967 LEU B 971 5 5 HELIX 10 AB1 CYS B 985 SER B 991 1 7 HELIX 11 AB2 VAL B 1031 GLY B 1035 5 5 HELIX 12 AB3 ASP B 1074 ASP B 1078 1 5 HELIX 13 AB4 ILE B 1107 ILE B 1111 5 5 HELIX 14 AB5 GLY B 1155 SER B 1163 1 9 HELIX 15 AB6 SER B 1178 ARG B 1191 1 14 SHEET 1 AA1 3 CYS A 937 VAL A 938 0 SHEET 2 AA1 3 LEU A1040 ARG A1044 1 O LEU A1042 N VAL A 938 SHEET 3 AA1 3 TRP A1050 ALA A1054 -1 O GLY A1051 N TYR A1043 SHEET 1 AA2 4 LYS A 951 TYR A 952 0 SHEET 2 AA2 4 TYR A1097 GLY A1105 1 O TYR A1103 N LYS A 951 SHEET 3 AA2 4 GLY A1069 SER A1073 -1 N ILE A1072 O CYS A1098 SHEET 4 AA2 4 CYS A 957 GLU A 958 1 N CYS A 957 O LEU A1071 SHEET 1 AA3 3 LYS A 951 TYR A 952 0 SHEET 2 AA3 3 TYR A1097 GLY A1105 1 O TYR A1103 N LYS A 951 SHEET 3 AA3 3 LEU A1086 ASP A1088 -1 N PHE A1087 O ILE A1099 SHEET 1 AA4 4 ILE A1014 PHE A1015 0 SHEET 2 AA4 4 ILE A1119 PHE A1125 1 O PHE A1125 N ILE A1014 SHEET 3 AA4 4 ARG A1135 SER A1140 -1 O ALA A1137 N VAL A1122 SHEET 4 AA4 4 PHE A1063 TYR A1067 -1 N ILE A1064 O PHE A1138 SHEET 1 AA5 2 ASN A1112 HIS A1113 0 SHEET 2 AA5 2 GLY A1151 PHE A1152 1 O PHE A1152 N ASN A1112 SHEET 1 AA6 3 CYS B 937 VAL B 938 0 SHEET 2 AA6 3 LEU B1040 ARG B1044 1 O LEU B1042 N VAL B 938 SHEET 3 AA6 3 TRP B1050 ALA B1054 -1 O GLY B1051 N TYR B1043 SHEET 1 AA7 4 LYS B 951 TYR B 952 0 SHEET 2 AA7 4 TYR B1097 GLY B1105 1 O TYR B1103 N LYS B 951 SHEET 3 AA7 4 GLY B1069 SER B1073 -1 N GLU B1070 O ASP B1100 SHEET 4 AA7 4 CYS B 957 GLU B 958 1 N CYS B 957 O LEU B1071 SHEET 1 AA8 3 LYS B 951 TYR B 952 0 SHEET 2 AA8 3 TYR B1097 GLY B1105 1 O TYR B1103 N LYS B 951 SHEET 3 AA8 3 LEU B1086 ASP B1088 -1 N PHE B1087 O ILE B1099 SHEET 1 AA9 4 ILE B1014 PHE B1015 0 SHEET 2 AA9 4 ILE B1119 PHE B1125 1 O PHE B1125 N ILE B1014 SHEET 3 AA9 4 ARG B1135 SER B1140 -1 O ALA B1137 N VAL B1122 SHEET 4 AA9 4 PHE B1063 TYR B1067 -1 N ILE B1064 O PHE B1138 SHEET 1 AB1 2 ASN B1112 HIS B1113 0 SHEET 2 AB1 2 GLY B1151 PHE B1152 1 O PHE B1152 N ASN B1112 SSBOND 1 CYS A 937 CYS A 946 1555 1555 2.04 SSBOND 2 CYS B 937 CYS B 946 1555 1555 2.04 LINK SG CYS A 974 ZN ZN A1300 1555 1555 2.39 LINK SG CYS A 974 ZN ZN A1302 1555 1555 2.33 LINK SG CYS A 976 ZN ZN A1302 1555 1555 2.35 LINK SG CYS A 980 ZN ZN A1301 1555 1555 2.32 LINK SG CYS A 980 ZN ZN A1302 1555 1555 2.37 LINK SG CYS A 985 ZN ZN A1302 1555 1555 2.27 LINK SG CYS A 987 ZN ZN A1300 1555 1555 2.30 LINK SG CYS A1017 ZN ZN A1300 1555 1555 2.38 LINK SG CYS A1017 ZN ZN A1301 1555 1555 2.35 LINK SG CYS A1021 ZN ZN A1300 1555 1555 2.32 LINK SG CYS A1023 ZN ZN A1301 1555 1555 2.29 LINK SG CYS A1027 ZN ZN A1301 1555 1555 2.28 LINK SG CYS A1115 ZN ZN A1303 1555 1555 2.42 LINK SG CYS A1168 ZN ZN A1303 1555 1555 2.28 LINK SG CYS A1170 ZN ZN A1303 1555 1555 2.35 LINK SG CYS A1175 ZN ZN A1303 1555 1555 2.29 LINK SG CYS B 974 ZN ZN B1300 1555 1555 2.36 LINK SG CYS B 974 ZN ZN B1301 1555 1555 2.42 LINK SG CYS B 976 ZN ZN B1300 1555 1555 2.36 LINK SG CYS B 980 ZN ZN B1300 1555 1555 2.36 LINK SG CYS B 980 ZN ZN B1302 1555 1555 2.34 LINK SG CYS B 985 ZN ZN B1300 1555 1555 2.31 LINK SG CYS B 987 ZN ZN B1301 1555 1555 2.28 LINK SG CYS B1017 ZN ZN B1301 1555 1555 2.35 LINK SG CYS B1017 ZN ZN B1302 1555 1555 2.38 LINK SG CYS B1021 ZN ZN B1301 1555 1555 2.35 LINK SG CYS B1023 ZN ZN B1302 1555 1555 2.33 LINK SG CYS B1027 ZN ZN B1302 1555 1555 2.32 LINK SG CYS B1115 ZN ZN B1303 1555 1555 2.43 LINK SG CYS B1168 ZN ZN B1303 1555 1555 2.29 LINK SG CYS B1170 ZN ZN B1303 1555 1555 2.34 LINK SG CYS B1175 ZN ZN B1303 1555 1555 2.31 SITE 1 AC1 4 CYS A 974 CYS A 987 CYS A1017 CYS A1021 SITE 1 AC2 4 CYS A 980 CYS A1017 CYS A1023 CYS A1027 SITE 1 AC3 4 CYS A 974 CYS A 976 CYS A 980 CYS A 985 SITE 1 AC4 4 CYS A1115 CYS A1168 CYS A1170 CYS A1175 SITE 1 AC5 20 MET A1048 TRP A1050 SER A1084 TYR A1085 SITE 2 AC5 20 ARG A1109 PHE A1110 ILE A1111 ASN A1112 SITE 3 AC5 20 HIS A1113 TYR A1154 PHE A1158 PHE A1166 SITE 4 AC5 20 THR A1167 CYS A1168 GLN A1169 HOH A1454 SITE 5 AC5 20 HOH A1483 HOH A1486 HOH A1593 HOH A1595 SITE 1 AC6 4 CYS B 974 CYS B 976 CYS B 980 CYS B 985 SITE 1 AC7 4 CYS B 974 CYS B 987 CYS B1017 CYS B1021 SITE 1 AC8 4 CYS B 980 CYS B1017 CYS B1023 CYS B1027 SITE 1 AC9 4 CYS B1115 CYS B1168 CYS B1170 CYS B1175 SITE 1 AD1 21 MET B1048 TRP B1050 SER B1084 TYR B1085 SITE 2 AD1 21 ARG B1109 PHE B1110 ILE B1111 ASN B1112 SITE 3 AD1 21 HIS B1113 TYR B1154 PHE B1158 PHE B1166 SITE 4 AD1 21 THR B1167 CYS B1168 GLN B1169 HOH B1419 SITE 5 AD1 21 HOH B1472 HOH B1534 HOH B1556 HOH B1583 SITE 6 AD1 21 HOH B1609 CRYST1 75.101 92.307 93.143 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010736 0.00000