HEADER SIGNALING PROTEIN 18-AUG-16 5T1A
TITLE STRUCTURE OF CC CHEMOKINE RECEPTOR 2 WITH ORTHOSTERIC AND ALLOSTERIC
TITLE 2 ANTAGONISTS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CHIMERA PROTEIN OF CC CHEMOKINE RECEPTOR TYPE 2 ISOFORM B
COMPND 3 AND T4-LYSOZYME,LYSOZYME;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: UNP P41597-2 RESIDUES 2-328 WITH UNP P00720 RESIDUES 2-161
COMPND 6 INSERTED AFTER RESIDUES 233;
COMPND 7 SYNONYM: CCR2,MONOCYTE CHEMOATTRACTANT PROTEIN 1 RECEPTOR,MCP-1-R,
COMPND 8 CCR2,MONOCYTE CHEMOATTRACTANT PROTEIN 1 RECEPTOR,MCP-1-R;
COMPND 9 EC: 3.2.1.17;
COMPND 10 ENGINEERED: YES;
COMPND 11 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 10665;
SOURCE 5 GENE: CCR2, CMKBR2, E, T4TP126;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS C-C CHEMOKINE RECEPTOR TYPE 2, DUAL ANTAGONIST, INTRACELLULAR
KEYWDS 2 ALLOSTERIC ANTAGONIST, COOPERATIVE BINDING, LIPIDIC CUBIC PHASE,
KEYWDS 3 MEMBRANE PROTEIN, GPCR, STRUCTURAL GENOMICS, PSI-2, PROTEIN
KEYWDS 4 STRUCTURE INITIATIVE, GPCR NETWORK, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.ZHENG,L.QIN,N.V.ORTIZ ZACARIAS,H.DE VRIES,G.W.HAN,M.GUSTAVSSON,
AUTHOR 2 M.DABROS,C.ZHAO,R.J.CHERNEY,P.CARTER,D.STAMOS,R.ABAGYAN,V.CHEREZOV,
AUTHOR 3 R.C.STEVENS,A.P.IJZERMAN,L.H.HEITMAN,A.TEBBEN,I.KUFAREVA,T.M.HANDEL
REVDAT 7 04-OCT-23 5T1A 1 LINK
REVDAT 6 11-DEC-19 5T1A 1 REMARK
REVDAT 5 13-SEP-17 5T1A 1 REMARK
REVDAT 4 04-JAN-17 5T1A 1 JRNL
REVDAT 3 28-DEC-16 5T1A 1 AUTHOR
REVDAT 2 21-DEC-16 5T1A 1 COMPND AUTHOR
REVDAT 1 14-DEC-16 5T1A 0
JRNL AUTH Y.ZHENG,L.QIN,N.V.ZACARIAS,H.DE VRIES,G.W.HAN,M.GUSTAVSSON,
JRNL AUTH 2 M.DABROS,C.ZHAO,R.J.CHERNEY,P.CARTER,D.STAMOS,R.ABAGYAN,
JRNL AUTH 3 V.CHEREZOV,R.C.STEVENS,A.P.IJZERMAN,L.H.HEITMAN,A.TEBBEN,
JRNL AUTH 4 I.KUFAREVA,T.M.HANDEL
JRNL TITL STRUCTURE OF CC CHEMOKINE RECEPTOR 2 WITH ORTHOSTERIC AND
JRNL TITL 2 ALLOSTERIC ANTAGONISTS.
JRNL REF NATURE V. 540 458 2016
JRNL REFN ESSN 1476-4687
JRNL PMID 27926736
JRNL DOI 10.1038/NATURE20605
REMARK 2
REMARK 2 RESOLUTION. 2.81 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.32
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2
REMARK 3 NUMBER OF REFLECTIONS : 14487
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.236
REMARK 3 R VALUE (WORKING SET) : 0.234
REMARK 3 FREE R VALUE : 0.274
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 742
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.3215 - 4.7879 0.99 3260 178 0.2055 0.2141
REMARK 3 2 4.7879 - 3.8050 0.99 3140 153 0.2030 0.2581
REMARK 3 3 3.8050 - 3.3254 1.00 3126 169 0.2435 0.3032
REMARK 3 4 3.3254 - 3.0220 0.99 3062 155 0.3036 0.3343
REMARK 3 5 3.0220 - 2.8057 0.38 1157 87 0.3235 0.3926
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.600
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 40.35
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 3643
REMARK 3 ANGLE : 0.845 4961
REMARK 3 CHIRALITY : 0.032 577
REMARK 3 PLANARITY : 0.003 603
REMARK 3 DIHEDRAL : 12.851 1267
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 233 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.6724 23.8183 170.4808
REMARK 3 T TENSOR
REMARK 3 T11: 0.3676 T22: 0.3114
REMARK 3 T33: 0.0923 T12: 0.0007
REMARK 3 T13: 0.0208 T23: 0.0216
REMARK 3 L TENSOR
REMARK 3 L11: 1.1336 L22: 1.1581
REMARK 3 L33: 1.9287 L12: 0.1155
REMARK 3 L13: -0.3861 L23: -0.3647
REMARK 3 S TENSOR
REMARK 3 S11: 0.0343 S12: 0.1441 S13: 0.1260
REMARK 3 S21: -0.1301 S22: 0.0035 S23: -0.0079
REMARK 3 S31: -0.1247 S32: -0.0548 S33: -0.0712
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1002 THROUGH 1162 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.9811 12.4267 214.5599
REMARK 3 T TENSOR
REMARK 3 T11: 0.4979 T22: 0.4515
REMARK 3 T33: -0.0008 T12: 0.0472
REMARK 3 T13: -0.0943 T23: -0.0229
REMARK 3 L TENSOR
REMARK 3 L11: 0.6985 L22: 1.2603
REMARK 3 L33: 1.5096 L12: -0.4384
REMARK 3 L13: -0.7029 L23: -0.1469
REMARK 3 S TENSOR
REMARK 3 S11: -0.0174 S12: -0.3179 S13: 0.1816
REMARK 3 S21: 0.3363 S22: 0.1725 S23: -0.4702
REMARK 3 S31: 0.0138 S32: 0.3401 S33: 0.1500
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 320 )
REMARK 3 ORIGIN FOR THE GROUP (A): 2.3465 20.7634 171.3347
REMARK 3 T TENSOR
REMARK 3 T11: 0.3414 T22: 0.4002
REMARK 3 T33: -0.0532 T12: -0.0021
REMARK 3 T13: 0.0222 T23: -0.0679
REMARK 3 L TENSOR
REMARK 3 L11: 1.5216 L22: 1.3690
REMARK 3 L33: 3.2509 L12: 0.0271
REMARK 3 L13: 0.0571 L23: 0.1016
REMARK 3 S TENSOR
REMARK 3 S11: -0.1300 S12: 0.3555 S13: -0.1375
REMARK 3 S21: -0.0037 S22: 0.0876 S23: -0.0406
REMARK 3 S31: -0.1402 S32: -0.1438 S33: -0.1384
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5T1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-16.
REMARK 100 THE DEPOSITION ID IS D_1000222819.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.1
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.03321
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15550
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 23.321
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1
REMARK 200 DATA REDUNDANCY : 5.300
REMARK 200 R MERGE (I) : 0.24100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95
REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6
REMARK 200 DATA REDUNDANCY IN SHELL : 1.80
REMARK 200 R MERGE FOR SHELL (I) : 1.13200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4MBS
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.86
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: LIPIDIC CUBIC PHASE MADE OF MONOOLEIN
REMARK 280 AND CHOLESTEROL, 100 MM 2-(N-MORPHOLINO)ETHANESULFONIC ACID, PH
REMARK 280 6.5, 30-32% (V/V) PEG 400, 75-85 MM LITHIUM SULFATE, PH 6.1,
REMARK 280 TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.61500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.99000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.99000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.61500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21310 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A -9
REMARK 465 TYR A -8
REMARK 465 LYS A -7
REMARK 465 ASP A -6
REMARK 465 ASP A -5
REMARK 465 ASP A -4
REMARK 465 ASP A -3
REMARK 465 LYS A -2
REMARK 465 PRO A -1
REMARK 465 GLY A 0
REMARK 465 THR A 1
REMARK 465 LEU A 2
REMARK 465 SER A 3
REMARK 465 THR A 4
REMARK 465 SER A 5
REMARK 465 ARG A 6
REMARK 465 SER A 7
REMARK 465 ARG A 8
REMARK 465 PHE A 9
REMARK 465 ILE A 10
REMARK 465 ARG A 11
REMARK 465 ASN A 12
REMARK 465 THR A 13
REMARK 465 ASN A 14
REMARK 465 GLU A 15
REMARK 465 SER A 16
REMARK 465 GLY A 17
REMARK 465 GLU A 18
REMARK 465 GLU A 19
REMARK 465 VAL A 20
REMARK 465 THR A 21
REMARK 465 THR A 22
REMARK 465 PHE A 23
REMARK 465 PHE A 24
REMARK 465 ASP A 25
REMARK 465 TYR A 26
REMARK 465 ASP A 27
REMARK 465 TYR A 28
REMARK 465 GLY A 29
REMARK 465 ALA A 30
REMARK 465 PRO A 31
REMARK 465 CYS A 32
REMARK 465 HIS A 33
REMARK 465 LYS A 34
REMARK 465 PHE A 35
REMARK 465 ASP A 36
REMARK 465 ARG A 321
REMARK 465 LYS A 322
REMARK 465 HIS A 323
REMARK 465 ILE A 324
REMARK 465 THR A 325
REMARK 465 LYS A 326
REMARK 465 ARG A 327
REMARK 465 PHE A 328
REMARK 465 GLY A 329
REMARK 465 ARG A 330
REMARK 465 PRO A 331
REMARK 465 LEU A 332
REMARK 465 GLU A 333
REMARK 465 VAL A 334
REMARK 465 LEU A 335
REMARK 465 PHE A 336
REMARK 465 GLN A 337
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 38 CG CD CE NZ
REMARK 470 GLN A 39 CG CD OE1 NE2
REMARK 470 LYS A 74 CG CD CE NZ
REMARK 470 LYS A 150 CE NZ
REMARK 470 LYS A 183 CG CD CE NZ
REMARK 470 ASP A 185 CG OD1 OD2
REMARK 470 SER A 186 OG
REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2
REMARK 470 SER A 223 OG
REMARK 470 LYS A 230 CG CD CE NZ
REMARK 470 LYS A1016 CE NZ
REMARK 470 THR A1021 OG1 CG2
REMARK 470 TYR A1024 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LEU A1039 CG CD1 CD2
REMARK 470 GLU A1045 CG CD OE1 OE2
REMARK 470 LYS A1048 CE NZ
REMARK 470 ASN A1053 CG OD1 ND2
REMARK 470 LYS A1060 CE NZ
REMARK 470 LYS A1065 CG CD CE NZ
REMARK 470 ARG A1080 CG CD NE CZ NH1 NH2
REMARK 470 GLU A1128 CG CD OE1 OE2
REMARK 470 PHE A 268 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 PHE A 271 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ASN A 276 CG OD1 ND2
REMARK 470 GLU A 278 CG CD OE1 OE2
REMARK 470 GLN A 285 CD OE1 NE2
REMARK 470 PHE A 319 CG CD1 CD2 CE1 CE2 CZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 70 -53.09 -124.95
REMARK 500 ASN A 104 -109.99 -124.61
REMARK 500 LEU A 211 -61.69 -147.52
REMARK 500 SER A 236 -63.77 -101.14
REMARK 500 THR A 267 -78.64 -112.78
REMARK 500 CYS A 298 1.75 -68.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1208 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 144 NE2
REMARK 620 2 GLU A 238 OE2 120.6
REMARK 620 3 GLU A1005 OE2 100.6 99.2
REMARK 620 4 HOH A1307 O 91.7 126.6 116.3
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 73R A 1201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue VT5 A 1202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1208
DBREF 5T1A A 2 233 UNP P41597 CCR2_HUMAN 2 233
DBREF 5T1A A 1002 1162 UNP D9IEF7 D9IEF7_BPT4 2 162
DBREF 5T1A A 234 328 UNP P41597 CCR2_HUMAN 234 328
SEQADV 5T1A ASP A -9 UNP P41597 EXPRESSION TAG
SEQADV 5T1A TYR A -8 UNP P41597 EXPRESSION TAG
SEQADV 5T1A LYS A -7 UNP P41597 EXPRESSION TAG
SEQADV 5T1A ASP A -6 UNP P41597 EXPRESSION TAG
SEQADV 5T1A ASP A -5 UNP P41597 EXPRESSION TAG
SEQADV 5T1A ASP A -4 UNP P41597 EXPRESSION TAG
SEQADV 5T1A ASP A -3 UNP P41597 EXPRESSION TAG
SEQADV 5T1A LYS A -2 UNP P41597 EXPRESSION TAG
SEQADV 5T1A PRO A -1 UNP P41597 EXPRESSION TAG
SEQADV 5T1A GLY A 0 UNP P41597 EXPRESSION TAG
SEQADV 5T1A THR A 1 UNP P41597 EXPRESSION TAG
SEQADV 5T1A SER A 226 UNP P41597 LEU 226 ENGINEERED MUTATION
SEQADV 5T1A ARG A 227 UNP P41597 LYS 227 ENGINEERED MUTATION
SEQADV 5T1A ALA A 228 UNP P41597 THR 228 ENGINEERED MUTATION
SEQADV 5T1A SER A 229 UNP P41597 LEU 229 ENGINEERED MUTATION
SEQADV 5T1A LYS A 230 UNP P41597 LEU 230 ENGINEERED MUTATION
SEQADV 5T1A SER A 231 UNP P41597 ARG 231 ENGINEERED MUTATION
SEQADV 5T1A ARG A 232 UNP P41597 CYS 232 ENGINEERED MUTATION
SEQADV 5T1A ILE A 233 UNP P41597 ARG 233 ENGINEERED MUTATION
SEQADV 5T1A THR A 1054 UNP D9IEF7 CYS 54 ENGINEERED MUTATION
SEQADV 5T1A ALA A 1097 UNP D9IEF7 CYS 97 ENGINEERED MUTATION
SEQADV 5T1A PRO A 1162 UNP D9IEF7 LYS 162 ENGINEERED MUTATION
SEQADV 5T1A PRO A 234 UNP P41597 ASN 234 ENGINEERED MUTATION
SEQADV 5T1A PRO A 235 UNP P41597 GLU 235 ENGINEERED MUTATION
SEQADV 5T1A SER A 236 UNP P41597 LYS 236 ENGINEERED MUTATION
SEQADV 5T1A ARG A 237 UNP P41597 LYS 237 ENGINEERED MUTATION
SEQADV 5T1A GLU A 238 UNP P41597 ARG 238 ENGINEERED MUTATION
SEQADV 5T1A LYS A 239 UNP P41597 HIS 239 ENGINEERED MUTATION
SEQADV 5T1A LYS A 240 UNP P41597 ARG 240 ENGINEERED MUTATION
SEQADV 5T1A GLY A 329 UNP P41597 ENGINEERED MUTATION
SEQADV 5T1A ARG A 330 UNP P41597 ENGINEERED MUTATION
SEQADV 5T1A PRO A 331 UNP P41597 ENGINEERED MUTATION
SEQADV 5T1A LEU A 332 UNP P41597 ENGINEERED MUTATION
SEQADV 5T1A GLU A 333 UNP P41597 ENGINEERED MUTATION
SEQADV 5T1A VAL A 334 UNP P41597 EXPRESSION TAG
SEQADV 5T1A LEU A 335 UNP P41597 EXPRESSION TAG
SEQADV 5T1A PHE A 336 UNP P41597 EXPRESSION TAG
SEQADV 5T1A GLN A 337 UNP P41597 EXPRESSION TAG
SEQRES 1 A 508 ASP TYR LYS ASP ASP ASP ASP LYS PRO GLY THR LEU SER
SEQRES 2 A 508 THR SER ARG SER ARG PHE ILE ARG ASN THR ASN GLU SER
SEQRES 3 A 508 GLY GLU GLU VAL THR THR PHE PHE ASP TYR ASP TYR GLY
SEQRES 4 A 508 ALA PRO CYS HIS LYS PHE ASP VAL LYS GLN ILE GLY ALA
SEQRES 5 A 508 GLN LEU LEU PRO PRO LEU TYR SER LEU VAL PHE ILE PHE
SEQRES 6 A 508 GLY PHE VAL GLY ASN MET LEU VAL VAL LEU ILE LEU ILE
SEQRES 7 A 508 ASN CYS LYS LYS LEU LYS CYS LEU THR ASP ILE TYR LEU
SEQRES 8 A 508 LEU ASN LEU ALA ILE SER ASP LEU LEU PHE LEU ILE THR
SEQRES 9 A 508 LEU PRO LEU TRP ALA HIS SER ALA ALA ASN GLU TRP VAL
SEQRES 10 A 508 PHE GLY ASN ALA MET CYS LYS LEU PHE THR GLY LEU TYR
SEQRES 11 A 508 HIS ILE GLY TYR PHE GLY GLY ILE PHE PHE ILE ILE LEU
SEQRES 12 A 508 LEU THR ILE ASP ARG TYR LEU ALA ILE VAL HIS ALA VAL
SEQRES 13 A 508 PHE ALA LEU LYS ALA ARG THR VAL THR PHE GLY VAL VAL
SEQRES 14 A 508 THR SER VAL ILE THR TRP LEU VAL ALA VAL PHE ALA SER
SEQRES 15 A 508 VAL PRO GLY ILE ILE PHE THR LYS YCM GLN LYS GLU ASP
SEQRES 16 A 508 SER VAL TYR VAL CYS GLY PRO TYR PHE PRO ARG GLY TRP
SEQRES 17 A 508 ASN ASN PHE HIS THR ILE MET ARG ASN ILE LEU GLY LEU
SEQRES 18 A 508 VAL LEU PRO LEU LEU ILE MET VAL ILE CYS TYR SER GLY
SEQRES 19 A 508 ILE SER ARG ALA SER LYS SER ARG ILE ASN ILE PHE GLU
SEQRES 20 A 508 MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE TYR
SEQRES 21 A 508 LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY HIS
SEQRES 22 A 508 LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SER
SEQRES 23 A 508 GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL
SEQRES 24 A 508 ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP
SEQRES 25 A 508 VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS
SEQRES 26 A 508 LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG
SEQRES 27 A 508 ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR
SEQRES 28 A 508 GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN
SEQRES 29 A 508 GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS
SEQRES 30 A 508 SER ARG TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG
SEQRES 31 A 508 VAL ILE THR THR PHE ARG THR GLY THR TRP ASP ALA TYR
SEQRES 32 A 508 PRO PRO PRO SER ARG GLU LYS LYS ALA VAL ARG VAL ILE
SEQRES 33 A 508 PHE THR ILE MET ILE VAL TYR PHE LEU PHE TRP THR PRO
SEQRES 34 A 508 TYR ASN ILE VAL ILE LEU LEU ASN THR PHE GLN GLU PHE
SEQRES 35 A 508 PHE GLY LEU SER ASN CYS GLU SER THR SER GLN LEU ASP
SEQRES 36 A 508 GLN ALA THR GLN VAL THR GLU THR LEU GLY MET THR HIS
SEQRES 37 A 508 CYS CYS ILE ASN PRO ILE ILE TYR ALA PHE VAL GLY GLU
SEQRES 38 A 508 LYS PHE ARG ARG TYR LEU SER VAL PHE PHE ARG LYS HIS
SEQRES 39 A 508 ILE THR LYS ARG PHE GLY ARG PRO LEU GLU VAL LEU PHE
SEQRES 40 A 508 GLN
MODRES 5T1A YCM A 181 CYS MODIFIED RESIDUE
HET YCM A 181 10
HET 73R A1201 35
HET VT5 A1202 24
HET SO4 A1203 5
HET SO4 A1204 5
HET SO4 A1205 5
HET SO4 A1206 5
HET OLC A1207 25
HET ZN A1208 1
HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
HETNAM 73R (3S)-1-{(1S,2R,4R)-4-[METHYL(PROPAN-2-YL)AMINO]-2-
HETNAM 2 73R PROPYLCYCLOHEXYL}-3-{[6-(TRIFLUOROMETHYL)QUINAZOLIN-4-
HETNAM 3 73R YL]AMINO}PYRROLIDIN-2-ONE
HETNAM VT5 (2~{R})-1-(4-CHLORANYL-2-FLUORANYL-PHENYL)-2-
HETNAM 2 VT5 CYCLOHEXYL-3-ETHANOYL-4-OXIDANYL-2~{H}-PYRROL-5-ONE
HETNAM SO4 SULFATE ION
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM ZN ZINC ION
HETSYN YCM CYSTEINE-S-ACETAMIDE
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 1 YCM C5 H10 N2 O3 S
FORMUL 2 73R C26 H36 F3 N5 O
FORMUL 3 VT5 C18 H19 CL F N O3
FORMUL 4 SO4 4(O4 S 2-)
FORMUL 8 OLC C21 H40 O4
FORMUL 9 ZN ZN 2+
FORMUL 10 HOH *17(H2 O)
HELIX 1 AA1 VAL A 37 CYS A 70 1 34
HELIX 2 AA2 CYS A 75 ILE A 93 1 19
HELIX 3 AA3 THR A 94 ASN A 104 1 11
HELIX 4 AA4 GLY A 109 VAL A 143 1 35
HELIX 5 AA5 ALA A 145 ARG A 152 1 8
HELIX 6 AA6 THR A 153 ALA A 171 1 19
HELIX 7 AA7 SER A 172 PHE A 178 1 7
HELIX 8 AA8 PRO A 195 LEU A 211 1 17
HELIX 9 AA9 LEU A 211 SER A 229 1 19
HELIX 10 AB1 ASN A 1002 GLU A 1011 1 10
HELIX 11 AB2 SER A 1038 GLY A 1051 1 14
HELIX 12 AB3 THR A 1059 LEU A 1079 1 21
HELIX 13 AB4 LEU A 1084 SER A 1090 1 7
HELIX 14 AB5 ASP A 1092 ALA A 1112 1 21
HELIX 15 AB6 PHE A 1114 GLN A 1123 1 10
HELIX 16 AB7 ARG A 1125 ALA A 1134 1 10
HELIX 17 AB8 SER A 1136 THR A 1142 1 7
HELIX 18 AB9 THR A 1142 GLY A 1156 1 15
HELIX 19 AC1 SER A 236 ASN A 266 1 31
HELIX 20 AC2 PHE A 268 GLY A 273 1 6
HELIX 21 AC3 GLU A 278 THR A 296 1 19
HELIX 22 AC4 ILE A 300 GLY A 309 1 10
HELIX 23 AC5 GLY A 309 PHE A 320 1 12
SHEET 1 AA1 2 THR A 179 GLU A 184 0
SHEET 2 AA1 2 VAL A 187 PRO A 192 -1 O VAL A 187 N GLU A 184
SHEET 1 AA2 3 ARG A1014 LYS A1019 0
SHEET 2 AA2 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018
SHEET 3 AA2 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025
SSBOND 1 CYS A 113 CYS A 190 1555 1555 2.03
LINK C LYS A 180 N YCM A 181 1555 1555 1.33
LINK C YCM A 181 N GLN A 182 1555 1555 1.33
LINK NE2 HIS A 144 ZN ZN A1208 1555 1555 2.03
LINK OE2 GLU A 238 ZN ZN A1208 1555 1555 1.86
LINK OE2 GLU A1005 ZN ZN A1208 1555 1555 2.03
LINK ZN ZN A1208 O HOH A1307 1555 1555 1.98
SITE 1 AC1 14 VAL A 37 GLY A 41 LEU A 44 LEU A 45
SITE 2 AC1 14 TYR A 49 TRP A 98 THR A 117 TYR A 120
SITE 3 AC1 14 CYS A 190 GLN A 288 VAL A 289 GLU A 291
SITE 4 AC1 14 THR A 292 MET A 295
SITE 1 AC2 10 VAL A 63 THR A 77 ARG A 237 ALA A 241
SITE 2 AC2 10 VAL A 244 TYR A 305 GLY A 309 GLU A 310
SITE 3 AC2 10 LYS A 311 PHE A 312
SITE 1 AC3 5 LYS A 71 LYS A 311 ARG A 314 TYR A 315
SITE 2 AC3 5 LYS A1135
SITE 1 AC4 5 SER A 236 ARG A 237 ARG A1008 ARG A1119
SITE 2 AC4 5 ARG A1125
SITE 1 AC5 5 PHE A1114 THR A1115 ASN A1116 SER A1117
SITE 2 AC5 5 ASN A1132
SITE 1 AC6 4 THR A1142 PRO A1143 ASN A1144 ARG A1145
SITE 1 AC7 10 PHE A 170 LYS A 180 TRP A 198 MET A 205
SITE 2 AC7 10 TYR A 222 ARG A 232 LYS A 239 ARG A 243
SITE 3 AC7 10 PHE A 246 THR A 247
SITE 1 AC8 4 HIS A 144 GLU A 238 GLU A1005 HOH A1307
CRYST1 59.230 64.690 169.980 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016883 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015458 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005883 0.00000