HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-16 5T1U
TITLE AMINOMETHYL-DERIVED BETA SECRETASE (BACE1) INHIBITORS: ENGAGING GLY230
TITLE 2 WITHOUT AN ANILIDE FUNCTIONALITY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-SECRETASE 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 46-454;
COMPND 5 SYNONYM: ASPARTYL PROTEASE 2,ASP 2,BETA-SITE AMYLOID PRECURSOR
COMPND 6 PROTEIN CLEAVING ENZYME 1,BETA-SITE APP CLEAVING ENZYME 1,MEMAPSIN-2,
COMPND 7 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2;
COMPND 8 EC: 3.4.23.46;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BACE1, BACE, KIAA1149;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BETA SECRETASE, ALZHEIMER'S, INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR K.D.PARRIS,F.VAJDOS
REVDAT 4 13-NOV-24 5T1U 1 REMARK
REVDAT 3 04-OCT-23 5T1U 1 REMARK
REVDAT 2 25-JAN-17 5T1U 1 JRNL
REVDAT 1 11-JAN-17 5T1U 0
JRNL AUTH C.R.BUTLER,K.OGILVIE,L.MARTINEZ-ALSINA,G.BARREIRO,E.M.BECK,
JRNL AUTH 2 C.E.NOLAN,K.ATCHISON,E.BENVENUTI,L.BUZON,S.DORAN,C.GONZALES,
JRNL AUTH 3 C.J.HELAL,X.HOU,M.H.HSU,E.F.JOHNSON,K.LAPHAM,L.LANYON,
JRNL AUTH 4 K.PARRIS,B.T.O'NEILL,D.RIDDELL,A.ROBSHAW,F.VAJDOS,
JRNL AUTH 5 M.A.BRODNEY
JRNL TITL AMINOMETHYL-DERIVED BETA SECRETASE (BACE1) INHIBITORS:
JRNL TITL 2 ENGAGING GLY230 WITHOUT AN ANILIDE FUNCTIONALITY.
JRNL REF J. MED. CHEM. V. 60 386 2017
JRNL REFN ISSN 1520-4804
JRNL PMID 27997172
JRNL DOI 10.1021/ACS.JMEDCHEM.6B01451
REMARK 2
REMARK 2 RESOLUTION. 1.78 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_1999
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 51983
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.188
REMARK 3 R VALUE (WORKING SET) : 0.187
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050
REMARK 3 FREE R VALUE TEST SET COUNT : 2624
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 44.3963 - 4.7381 1.00 2869 148 0.1940 0.2063
REMARK 3 2 4.7381 - 3.7614 1.00 2693 143 0.1543 0.1554
REMARK 3 3 3.7614 - 3.2861 1.00 2605 182 0.1659 0.1867
REMARK 3 4 3.2861 - 2.9857 1.00 2648 128 0.1774 0.1978
REMARK 3 5 2.9857 - 2.7717 1.00 2598 140 0.1895 0.2325
REMARK 3 6 2.7717 - 2.6083 1.00 2593 148 0.1912 0.1981
REMARK 3 7 2.6083 - 2.4777 1.00 2606 133 0.1894 0.2267
REMARK 3 8 2.4777 - 2.3699 1.00 2592 130 0.1917 0.1977
REMARK 3 9 2.3699 - 2.2786 1.00 2547 142 0.1978 0.2221
REMARK 3 10 2.2786 - 2.2000 1.00 2588 147 0.1934 0.2475
REMARK 3 11 2.2000 - 2.1312 1.00 2569 129 0.1984 0.2293
REMARK 3 12 2.1312 - 2.0703 1.00 2570 128 0.1977 0.2259
REMARK 3 13 2.0703 - 2.0158 1.00 2565 138 0.2019 0.2364
REMARK 3 14 2.0158 - 1.9666 1.00 2533 142 0.2119 0.2495
REMARK 3 15 1.9666 - 1.9219 1.00 2555 138 0.2178 0.2629
REMARK 3 16 1.9219 - 1.8810 1.00 2600 116 0.2298 0.3023
REMARK 3 17 1.8810 - 1.8434 1.00 2503 150 0.2366 0.2800
REMARK 3 18 1.8434 - 1.8086 1.00 2571 118 0.2540 0.2546
REMARK 3 19 1.8086 - 1.7763 1.00 2554 124 0.2875 0.3105
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.390
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 31.99
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.018 3102
REMARK 3 ANGLE : 1.599 4226
REMARK 3 CHIRALITY : 0.098 461
REMARK 3 PLANARITY : 0.008 552
REMARK 3 DIHEDRAL : 14.136 1125
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5T1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-16.
REMARK 100 THE DEPOSITION ID IS D_1000223490.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-NOV-14
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.5
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52069
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780
REMARK 200 RESOLUTION RANGE LOW (A) : 88.770
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 19.30
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 19.50
REMARK 200 R MERGE FOR SHELL (I) : 0.90100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: 1W50
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.12
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20 - 22.5% (W/V) PEG 5000
REMARK 280 MONOMETHYLETHYL (MME), 200 MM SODIUM CITRATE (PH 6.6), 200 MM
REMARK 280 AMMONIUM IODIDE)., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.23100
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.46200
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.84650
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 143.07750
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.61550
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.23100
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.46200
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 143.07750
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.84650
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.61550
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 727 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 765 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 766 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A -15
REMARK 465 THR A -14
REMARK 465 ASP A -13
REMARK 465 GLU A -12
REMARK 465 GLU A -11
REMARK 465 PRO A -10
REMARK 465 GLU A -9
REMARK 465 GLU A -8
REMARK 465 PRO A -7
REMARK 465 GLY A -6
REMARK 465 ARG A -5
REMARK 465 ARG A -4
REMARK 465 GLY A 158
REMARK 465 PHE A 159
REMARK 465 PRO A 160
REMARK 465 LEU A 161
REMARK 465 ASN A 162
REMARK 465 GLN A 163
REMARK 465 SER A 164
REMARK 465 GLU A 165
REMARK 465 VAL A 166
REMARK 465 ILE A 386
REMARK 465 PRO A 387
REMARK 465 GLN A 388
REMARK 465 THR A 389
REMARK 465 ASP A 390
REMARK 465 GLU A 391
REMARK 465 SER A 392
REMARK 465 THR A 393
REMARK 465 HIS A 394
REMARK 465 HIS A 395
REMARK 465 HIS A 396
REMARK 465 HIS A 397
REMARK 465 HIS A 398
REMARK 465 HIS A 399
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 9 CG CD CE NZ
REMARK 470 GLN A 73 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 216 O HOH A 501 2.05
REMARK 500 NE2 GLN A 211 O HOH A 502 2.16
REMARK 500 O HOH A 514 O HOH A 534 2.18
REMARK 500 O HOH A 665 O HOH A 723 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 733 O HOH A 782 12545 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 73 52.76 -113.85
REMARK 500 HIS A 89 55.32 -105.02
REMARK 500 PHE A 108 -62.48 -105.68
REMARK 500 ALA A 122 -168.60 -79.83
REMARK 500 TRP A 197 -88.04 -143.76
REMARK 500 ALA A 272 107.67 -41.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue P6U A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5T1W RELATED DB: PDB
DBREF 5T1U A -15 393 UNP P56817 BACE1_HUMAN 46 454
SEQADV 5T1U HIS A 394 UNP P56817 EXPRESSION TAG
SEQADV 5T1U HIS A 395 UNP P56817 EXPRESSION TAG
SEQADV 5T1U HIS A 396 UNP P56817 EXPRESSION TAG
SEQADV 5T1U HIS A 397 UNP P56817 EXPRESSION TAG
SEQADV 5T1U HIS A 398 UNP P56817 EXPRESSION TAG
SEQADV 5T1U HIS A 399 UNP P56817 EXPRESSION TAG
SEQRES 1 A 415 GLU THR ASP GLU GLU PRO GLU GLU PRO GLY ARG ARG GLY
SEQRES 2 A 415 SER PHE VAL GLU MET VAL ASP ASN LEU ARG GLY LYS SER
SEQRES 3 A 415 GLY GLN GLY TYR TYR VAL GLU MET THR VAL GLY SER PRO
SEQRES 4 A 415 PRO GLN THR LEU ASN ILE LEU VAL ASP THR GLY SER SER
SEQRES 5 A 415 ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO PHE LEU HIS
SEQRES 6 A 415 ARG TYR TYR GLN ARG GLN LEU SER SER THR TYR ARG ASP
SEQRES 7 A 415 LEU ARG LYS GLY VAL TYR VAL PRO TYR THR GLN GLY LYS
SEQRES 8 A 415 TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SER ILE PRO
SEQRES 9 A 415 HIS GLY PRO ASN VAL THR VAL ARG ALA ASN ILE ALA ALA
SEQRES 10 A 415 ILE THR GLU SER ASP LYS PHE PHE ILE ASN GLY SER ASN
SEQRES 11 A 415 TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA GLU ILE ALA
SEQRES 12 A 415 ARG PRO ASP ASP SER LEU GLU PRO PHE PHE ASP SER LEU
SEQRES 13 A 415 VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SER LEU GLN
SEQRES 14 A 415 LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SER GLU VAL
SEQRES 15 A 415 LEU ALA SER VAL GLY GLY SER MET ILE ILE GLY GLY ILE
SEQRES 16 A 415 ASP HIS SER LEU TYR THR GLY SER LEU TRP TYR THR PRO
SEQRES 17 A 415 ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE ILE VAL ARG
SEQRES 18 A 415 VAL GLU ILE ASN GLY GLN ASP LEU LYS MET ASP CYS LYS
SEQRES 19 A 415 GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SER GLY THR
SEQRES 20 A 415 THR ASN LEU ARG LEU PRO LYS LYS VAL PHE GLU ALA ALA
SEQRES 21 A 415 VAL LYS SER ILE LYS ALA ALA SER SER THR GLU LYS PHE
SEQRES 22 A 415 PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU VAL CYS TRP
SEQRES 23 A 415 GLN ALA GLY THR THR PRO TRP ASN ILE PHE PRO VAL ILE
SEQRES 24 A 415 SER LEU TYR LEU MET GLY GLU VAL THR ASN GLN SER PHE
SEQRES 25 A 415 ARG ILE THR ILE LEU PRO GLN GLN TYR LEU ARG PRO VAL
SEQRES 26 A 415 GLU ASP VAL ALA THR SER GLN ASP ASP CYS TYR LYS PHE
SEQRES 27 A 415 ALA ILE SER GLN SER SER THR GLY THR VAL MET GLY ALA
SEQRES 28 A 415 VAL ILE MET GLU GLY PHE TYR VAL VAL PHE ASP ARG ALA
SEQRES 29 A 415 ARG LYS ARG ILE GLY PHE ALA VAL SER ALA CYS HIS VAL
SEQRES 30 A 415 HIS ASP GLU PHE ARG THR ALA ALA VAL GLU GLY PRO PHE
SEQRES 31 A 415 VAL THR LEU ASP MET GLU ASP CYS GLY TYR ASN ILE PRO
SEQRES 32 A 415 GLN THR ASP GLU SER THR HIS HIS HIS HIS HIS HIS
HET P6U A 401 25
HET IOD A 402 1
HET IOD A 403 1
HET IOD A 404 1
HET EDO A 405 10
HET EDO A 406 10
HETNAM P6U (4S)-4-[2,4-DIFLUORO-5-({[1-(TRIFLUOROMETHYL)
HETNAM 2 P6U CYCLOPROPYL]AMINO}METHYL)PHENYL]-4-METHYL-5,6-DIHYDRO-
HETNAM 3 P6U 4H-1,3-THIAZIN-2-AMINE
HETNAM IOD IODIDE ION
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 P6U C16 H18 F5 N3 S
FORMUL 3 IOD 3(I 1-)
FORMUL 6 EDO 2(C2 H6 O2)
FORMUL 8 HOH *282(H2 O)
HELIX 1 AA1 PHE A -1 VAL A 3 5 5
HELIX 2 AA2 GLN A 53 SER A 57 5 5
HELIX 3 AA3 TYR A 123 ALA A 127 5 5
HELIX 4 AA4 PRO A 135 THR A 144 1 10
HELIX 5 AA5 ASP A 180 SER A 182 5 3
HELIX 6 AA6 ASP A 216 TYR A 222 5 7
HELIX 7 AA7 LYS A 238 SER A 252 1 15
HELIX 8 AA8 PRO A 258 LEU A 263 1 6
HELIX 9 AA9 PRO A 276 PHE A 280 5 5
HELIX 10 AB1 LEU A 301 TYR A 305 1 5
HELIX 11 AB2 GLY A 334 GLU A 339 1 6
HELIX 12 AB3 ARG A 347 ARG A 349 5 3
HELIX 13 AB4 ASP A 378 GLY A 383 5 6
SHEET 1 AA1 9 ARG A 61 TYR A 71 0
SHEET 2 AA1 9 GLY A 74 SER A 86 -1 O GLY A 74 N TYR A 71
SHEET 3 AA1 9 TYR A 14 VAL A 20 -1 N THR A 19 O SER A 86
SHEET 4 AA1 9 LEU A 6 LYS A 9 -1 N ARG A 7 O TYR A 15
SHEET 5 AA1 9 SER A 169 ILE A 176 -1 O GLY A 172 N LEU A 6
SHEET 6 AA1 9 PHE A 150 GLY A 156 -1 N CYS A 155 O GLY A 171
SHEET 7 AA1 9 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150
SHEET 8 AA1 9 ARG A 351 SER A 357 -1 O GLY A 353 N VAL A 344
SHEET 9 AA1 9 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352
SHEET 1 AA213 ARG A 61 TYR A 71 0
SHEET 2 AA213 GLY A 74 SER A 86 -1 O GLY A 74 N TYR A 71
SHEET 3 AA213 VAL A 95 ASP A 106 -1 O VAL A 95 N VAL A 85
SHEET 4 AA213 PHE A 38 GLY A 41 1 N VAL A 40 O ILE A 102
SHEET 5 AA213 GLY A 117 GLY A 120 -1 O ILE A 118 N ALA A 39
SHEET 6 AA213 GLN A 25 ASP A 32 1 N LEU A 30 O LEU A 119
SHEET 7 AA213 TYR A 14 VAL A 20 -1 N MET A 18 O LEU A 27
SHEET 8 AA213 LEU A 6 LYS A 9 -1 N ARG A 7 O TYR A 15
SHEET 9 AA213 SER A 169 ILE A 176 -1 O GLY A 172 N LEU A 6
SHEET 10 AA213 PHE A 150 GLY A 156 -1 N CYS A 155 O GLY A 171
SHEET 11 AA213 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150
SHEET 12 AA213 ARG A 351 SER A 357 -1 O GLY A 353 N VAL A 344
SHEET 13 AA213 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352
SHEET 1 AA3 5 GLN A 211 ASP A 212 0
SHEET 2 AA3 5 ILE A 203 ILE A 208 -1 N ILE A 208 O GLN A 211
SHEET 3 AA3 5 ILE A 283 MET A 288 -1 O TYR A 286 N ARG A 205
SHEET 4 AA3 5 GLN A 294 ILE A 300 -1 O ILE A 298 N LEU A 285
SHEET 5 AA3 5 ALA A 369 VAL A 375 -1 O GLU A 371 N ARG A 297
SHEET 1 AA4 4 SER A 225 VAL A 227 0
SHEET 2 AA4 4 THR A 331 MET A 333 1 O MET A 333 N ILE A 226
SHEET 3 AA4 4 LEU A 234 PRO A 237 -1 N ARG A 235 O VAL A 332
SHEET 4 AA4 4 ILE A 324 SER A 327 1 O SER A 325 N LEU A 236
SHEET 1 AA5 3 VAL A 268 TRP A 270 0
SHEET 2 AA5 3 ASP A 318 PHE A 322 -1 O TYR A 320 N VAL A 268
SHEET 3 AA5 3 LEU A 306 PRO A 308 -1 N ARG A 307 O LYS A 321
SSBOND 1 CYS A 155 CYS A 359 1555 1555 2.12
SSBOND 2 CYS A 217 CYS A 382 1555 1555 2.08
SSBOND 3 CYS A 269 CYS A 319 1555 1555 2.07
CISPEP 1 SER A 22 PRO A 23 0 -3.55
CISPEP 2 ARG A 128 PRO A 129 0 5.85
CISPEP 3 TYR A 222 ASP A 223 0 5.04
CISPEP 4 GLY A 372 PRO A 373 0 -1.22
SITE 1 AC1 14 GLY A 11 GLY A 13 ASP A 32 TYR A 71
SITE 2 AC1 14 PHE A 108 ILE A 110 TRP A 115 ASP A 228
SITE 3 AC1 14 GLY A 230 THR A 231 THR A 232 EDO A 405
SITE 4 AC1 14 HOH A 522 HOH A 592
SITE 1 AC2 1 SER A 105
SITE 1 AC3 1 LYS A 107
SITE 1 AC4 1 ARG A 349
SITE 1 AC5 8 GLY A 11 GLN A 12 GLY A 13 TYR A 14
SITE 2 AC5 8 THR A 232 ALA A 335 P6U A 401 HOH A 548
SITE 1 AC6 6 ARG A 50 TYR A 51 GLN A 53 HOH A 530
SITE 2 AC6 6 HOH A 582 HOH A 676
CRYST1 102.497 102.497 171.693 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009756 0.005633 0.000000 0.00000
SCALE2 0.000000 0.011266 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005824 0.00000