HEADER TRANSFERASE 24-AUG-16 5T2T TITLE CRYSTAL STRUCTURE OF LYMPHOCYTIC CHORIOMENINGITIS MAMMARENAVIRUS TITLE 2 ENDONUCLEASE BOUND TO COMPOUND L742001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE L; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN L; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYMPHOCYTIC CHORIOMENINGITIS MAMMARENAVIRUS; SOURCE 3 ORGANISM_TAXID: 11623; SOURCE 4 GENE: L, KUE_IGS310002; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAMMARENAVIRUS, LCMV, ENDONUCLEASE, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAEZ-AYALA,E.L.YEKWA,B.CANARD,K.ALVAREZ,F.FERRON REVDAT 5 17-JAN-24 5T2T 1 LINK REVDAT 4 30-MAY-18 5T2T 1 JRNL REVDAT 3 09-MAY-18 5T2T 1 JRNL REVDAT 2 18-APR-18 5T2T 1 JRNL REVDAT 1 13-SEP-17 5T2T 0 JRNL AUTH M.SAEZ-AYALA,E.L.YEKWA,M.CARCELLI,B.CANARD,K.ALVAREZ, JRNL AUTH 2 F.FERRON JRNL TITL CRYSTAL STRUCTURES OFLYMPHOCYTIC CHORIOMENINGITIS JRNL TITL 2 VIRUSENDONUCLEASE DOMAIN COMPLEXED WITH DIKETO-ACID LIGANDS. JRNL REF IUCRJ V. 5 223 2018 JRNL REFN ESSN 2052-2525 JRNL PMID 29765612 JRNL DOI 10.1107/S2052252518001021 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0784 - 4.9547 1.00 2729 160 0.1733 0.2050 REMARK 3 2 4.9547 - 3.9330 1.00 2684 147 0.1443 0.1721 REMARK 3 3 3.9330 - 3.4360 1.00 2680 162 0.1635 0.2047 REMARK 3 4 3.4360 - 3.1218 1.00 2640 133 0.1682 0.1959 REMARK 3 5 3.1218 - 2.8981 1.00 2694 108 0.1839 0.2279 REMARK 3 6 2.8981 - 2.7272 1.00 2662 114 0.1929 0.2520 REMARK 3 7 2.7272 - 2.5907 1.00 2643 147 0.1940 0.2322 REMARK 3 8 2.5907 - 2.4779 1.00 2659 130 0.1969 0.2507 REMARK 3 9 2.4779 - 2.3825 1.00 2668 121 0.2003 0.2391 REMARK 3 10 2.3825 - 2.3003 1.00 2649 130 0.2127 0.2857 REMARK 3 11 2.3003 - 2.2284 1.00 2648 133 0.2174 0.2456 REMARK 3 12 2.2284 - 2.1647 1.00 2580 150 0.2152 0.2616 REMARK 3 13 2.1647 - 2.1077 1.00 2689 123 0.2308 0.3113 REMARK 3 14 2.1077 - 2.0562 1.00 2639 140 0.2365 0.2772 REMARK 3 15 2.0562 - 2.0095 1.00 2587 148 0.2626 0.2819 REMARK 3 16 2.0095 - 1.9667 1.00 2630 164 0.2664 0.3116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3308 REMARK 3 ANGLE : 1.155 4448 REMARK 3 CHIRALITY : 0.041 495 REMARK 3 PLANARITY : 0.004 578 REMARK 3 DIHEDRAL : 14.329 1270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8729 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44686 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.967 REMARK 200 RESOLUTION RANGE LOW (A) : 54.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3JSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE 0,1M, ISOPROPANOL 3,5%, REMARK 280 MNCL2 1MM, L742001 2MM, PH 6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.04350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.52175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.56525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -216.23200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -108.11600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 27.04350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -216.23200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -108.11600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -27.04350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 THR A 192 REMARK 465 ILE A 193 REMARK 465 ASP A 194 REMARK 465 LYS A 195 REMARK 465 ARG A 196 REMARK 465 MET B -7 REMARK 465 ILE B 193 REMARK 465 ASP B 194 REMARK 465 LYS B 195 REMARK 465 ARG B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 87 N ASP A 88 1.03 REMARK 500 MN MN A 201 H14 0N8 A 203 1.37 REMARK 500 OD1 ASP A 88 MN MN A 202 1.61 REMARK 500 O HOH B 303 O HOH B 305 2.10 REMARK 500 OE2 GLU A 181 O HOH A 301 2.10 REMARK 500 OG SER A 22 O HOH A 302 2.11 REMARK 500 NZ LYS A 56 O HOH A 303 2.12 REMARK 500 OE2 GLU B 168 O HOH B 301 2.16 REMARK 500 O HOH B 409 O HOH B 458 2.16 REMARK 500 O HOH A 303 O HOH A 423 2.16 REMARK 500 OE1 GLU A 153 O HOH A 304 2.17 REMARK 500 NH2 ARG A 126 O HOH A 305 2.18 REMARK 500 OD2 ASP A 88 N CYS A 102 2.19 REMARK 500 O HOH B 328 O HOH B 451 2.19 REMARK 500 O HOH A 323 O HOH A 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 126 O LYS B 56 4544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 87 CA - C - N ANGL. DEV. = 48.1 DEGREES REMARK 500 PRO A 87 O - C - N ANGL. DEV. = -75.4 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 80 C - N - CD ANGL. DEV. = -39.4 DEGREES REMARK 500 GLY B 81 N - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 88 -50.67 86.89 REMARK 500 ASP A 94 -127.17 55.85 REMARK 500 LEU B 82 110.20 -162.43 REMARK 500 LYS B 91 115.31 -167.08 REMARK 500 ASP B 94 -114.59 52.89 REMARK 500 LYS B 190 -11.64 -39.74 REMARK 500 THR B 191 -19.34 -40.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 87 169.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD1 REMARK 620 2 ASP A 88 OD2 56.5 REMARK 620 3 ASP A 88 OD2 17.1 44.7 REMARK 620 4 CYS A 102 O 129.8 77.7 113.1 REMARK 620 5 0N8 A 203 O28 70.2 119.6 87.0 159.9 REMARK 620 6 0N8 A 203 O25 138.9 150.9 155.7 91.2 68.7 REMARK 620 7 HOH A 340 O 104.9 79.6 109.5 83.6 89.4 72.5 REMARK 620 8 HOH A 342 O 84.4 100.4 77.4 84.9 100.6 105.3 168.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD1 REMARK 620 2 0N8 A 203 O28 71.8 REMARK 620 3 0N8 A 203 O27 148.8 77.8 REMARK 620 4 HOH A 308 O 122.8 164.7 88.1 REMARK 620 5 HOH A 313 O 89.6 88.7 96.9 87.3 REMARK 620 6 HOH A 360 O 93.9 103.0 85.8 81.4 168.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 153 OE1 REMARK 620 2 GLU B 153 OE2 54.3 REMARK 620 3 HOH B 393 O 73.2 127.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0N8 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 205 DBREF1 5T2T A 1 196 UNP A0A059U382_9VIRU DBREF2 5T2T A A0A059U382 2 197 DBREF1 5T2T B 1 196 UNP A0A059U382_9VIRU DBREF2 5T2T B A0A059U382 2 197 SEQADV 5T2T MET A -7 UNP A0A059U38 INITIATING METHIONINE SEQADV 5T2T LYS A -6 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A -5 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A -4 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A -3 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A -2 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A -1 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS A 0 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T ASP A 173 UNP A0A059U38 ASN 174 CONFLICT SEQADV 5T2T MET B -7 UNP A0A059U38 INITIATING METHIONINE SEQADV 5T2T LYS B -6 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B -5 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B -4 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B -3 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B -2 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B -1 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T HIS B 0 UNP A0A059U38 EXPRESSION TAG SEQADV 5T2T ASP B 173 UNP A0A059U38 ASN 174 CONFLICT SEQRES 1 A 204 MET LYS HIS HIS HIS HIS HIS HIS ASP GLU ILE ILE SER SEQRES 2 A 204 GLU LEU ARG GLU LEU CYS LEU ASN TYR ILE GLU GLN ASP SEQRES 3 A 204 GLU ARG LEU SER ARG GLN LYS LEU ASN PHE LEU GLY GLN SEQRES 4 A 204 ARG GLU PRO ARG MET VAL LEU ILE GLU GLY LEU LYS LEU SEQRES 5 A 204 LEU SER ARG CYS ILE GLU ILE ASP SER ALA ASP LYS SER SEQRES 6 A 204 GLY CYS THR HIS ASN HIS ASP ASP LYS SER VAL GLU THR SEQRES 7 A 204 ILE LEU VAL GLU SER GLY ILE VAL CYS PRO GLY LEU PRO SEQRES 8 A 204 LEU ILE ILE PRO ASP GLY TYR LYS LEU ILE ASP ASN SER SEQRES 9 A 204 LEU ILE LEU LEU GLU CYS PHE VAL ARG SER THR PRO ALA SEQRES 10 A 204 SER PHE GLU LYS LYS PHE ILE GLU ASP THR ASN LYS LEU SEQRES 11 A 204 ALA CYS ILE ARG GLU ASP LEU ALA VAL ALA GLY VAL THR SEQRES 12 A 204 LEU VAL PRO ILE VAL ASP GLY ARG CYS ASP TYR ASP ASN SEQRES 13 A 204 SER PHE MET PRO GLU TRP ALA ASN PHE LYS PHE ARG ASP SEQRES 14 A 204 LEU LEU PHE LYS LEU LEU GLU TYR SER ASN GLN ASP GLU SEQRES 15 A 204 LYS VAL PHE GLU GLU SER GLU TYR PHE ARG LEU CYS GLU SEQRES 16 A 204 SER LEU LYS THR THR ILE ASP LYS ARG SEQRES 1 B 204 MET LYS HIS HIS HIS HIS HIS HIS ASP GLU ILE ILE SER SEQRES 2 B 204 GLU LEU ARG GLU LEU CYS LEU ASN TYR ILE GLU GLN ASP SEQRES 3 B 204 GLU ARG LEU SER ARG GLN LYS LEU ASN PHE LEU GLY GLN SEQRES 4 B 204 ARG GLU PRO ARG MET VAL LEU ILE GLU GLY LEU LYS LEU SEQRES 5 B 204 LEU SER ARG CYS ILE GLU ILE ASP SER ALA ASP LYS SER SEQRES 6 B 204 GLY CYS THR HIS ASN HIS ASP ASP LYS SER VAL GLU THR SEQRES 7 B 204 ILE LEU VAL GLU SER GLY ILE VAL CYS PRO GLY LEU PRO SEQRES 8 B 204 LEU ILE ILE PRO ASP GLY TYR LYS LEU ILE ASP ASN SER SEQRES 9 B 204 LEU ILE LEU LEU GLU CYS PHE VAL ARG SER THR PRO ALA SEQRES 10 B 204 SER PHE GLU LYS LYS PHE ILE GLU ASP THR ASN LYS LEU SEQRES 11 B 204 ALA CYS ILE ARG GLU ASP LEU ALA VAL ALA GLY VAL THR SEQRES 12 B 204 LEU VAL PRO ILE VAL ASP GLY ARG CYS ASP TYR ASP ASN SEQRES 13 B 204 SER PHE MET PRO GLU TRP ALA ASN PHE LYS PHE ARG ASP SEQRES 14 B 204 LEU LEU PHE LYS LEU LEU GLU TYR SER ASN GLN ASP GLU SEQRES 15 B 204 LYS VAL PHE GLU GLU SER GLU TYR PHE ARG LEU CYS GLU SEQRES 16 B 204 SER LEU LYS THR THR ILE ASP LYS ARG HET MN A 201 1 HET MN A 202 1 HET 0N8 A 203 52 HET GOL A 204 14 HET GOL B 201 14 HET CL B 202 1 HET CL B 203 1 HET NA B 204 1 HET NA B 205 1 HETNAM MN MANGANESE (II) ION HETNAM 0N8 (2Z)-4-[1-BENZYL-4-(4-CHLOROBENZYL)PIPERIDIN-4-YL]-2- HETNAM 2 0N8 HYDROXY-4-OXOBUT-2-ENOIC ACID HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 5 0N8 C23 H24 CL N O4 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 CL 2(CL 1-) FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *346(H2 O) HELIX 1 AA1 HIS A 0 TYR A 14 1 15 HELIX 2 AA2 ASP A 18 ARG A 20 5 3 HELIX 3 AA3 LEU A 21 GLY A 30 1 10 HELIX 4 AA4 GLU A 33 SER A 57 1 25 HELIX 5 AA5 SER A 67 GLU A 74 1 8 HELIX 6 AA6 THR A 107 CYS A 124 1 18 HELIX 7 AA7 ILE A 125 ALA A 132 1 8 HELIX 8 AA8 PRO A 152 GLU A 174 1 23 HELIX 9 AA9 SER A 180 GLU A 187 1 8 HELIX 10 AB1 HIS B -1 ILE B 15 1 17 HELIX 11 AB2 ASP B 18 ARG B 20 5 3 HELIX 12 AB3 LEU B 21 GLY B 30 1 10 HELIX 13 AB4 GLU B 33 SER B 57 1 25 HELIX 14 AB5 SER B 67 GLU B 74 1 8 HELIX 15 AB6 THR B 107 CYS B 124 1 18 HELIX 16 AB7 ILE B 125 ALA B 132 1 8 HELIX 17 AB8 PRO B 152 GLU B 178 1 27 HELIX 18 AB9 SER B 180 LYS B 190 1 11 SHEET 1 AA1 4 THR A 60 HIS A 61 0 SHEET 2 AA1 4 GLY A 89 ILE A 93 -1 O TYR A 90 N THR A 60 SHEET 3 AA1 4 SER A 96 VAL A 104 -1 O ILE A 98 N LYS A 91 SHEET 4 AA1 4 THR A 135 ARG A 143 1 O ASP A 141 N GLU A 101 SHEET 1 AA2 4 THR B 60 HIS B 61 0 SHEET 2 AA2 4 GLY B 89 ILE B 93 -1 O TYR B 90 N THR B 60 SHEET 3 AA2 4 SER B 96 VAL B 104 -1 O SER B 96 N ILE B 93 SHEET 4 AA2 4 THR B 135 ARG B 143 1 O ASP B 141 N GLU B 101 LINK OD1AASP A 88 MN MN A 201 1555 1555 2.24 LINK OD2AASP A 88 MN MN A 201 1555 1555 2.17 LINK OD2BASP A 88 MN MN A 201 1555 1555 2.32 LINK OD1AASP A 88 MN MN A 202 1555 1555 2.17 LINK O CYS A 102 MN MN A 201 1555 1555 2.19 LINK MN MN A 201 O28 0N8 A 203 1555 1555 2.22 LINK MN MN A 201 O25 0N8 A 203 1555 1555 2.23 LINK MN MN A 201 O HOH A 340 1555 1555 2.20 LINK MN MN A 201 O HOH A 342 1555 1555 2.17 LINK MN MN A 202 O28 0N8 A 203 1555 1555 2.20 LINK MN MN A 202 O27 0N8 A 203 1555 1555 2.19 LINK MN MN A 202 O HOH A 308 1555 1555 2.20 LINK MN MN A 202 O HOH A 313 1555 1555 2.20 LINK MN MN A 202 O HOH A 360 1555 1555 2.21 LINK OE1 GLU B 153 NA NA B 205 1555 1555 2.42 LINK OE2 GLU B 153 NA NA B 205 1555 1555 2.42 LINK NA NA B 204 O HOH B 394 1555 1555 2.41 LINK NA NA B 205 O HOH B 393 1555 1555 2.41 SITE 1 AC1 6 ASP A 88 CYS A 102 MN A 202 0N8 A 203 SITE 2 AC1 6 HOH A 340 HOH A 342 SITE 1 AC2 6 ASP A 88 MN A 201 0N8 A 203 HOH A 308 SITE 2 AC2 6 HOH A 313 HOH A 360 SITE 1 AC3 15 LYS A 43 ARG A 47 LEU A 84 ASP A 88 SITE 2 AC3 15 CYS A 102 LYS A 114 MN A 201 MN A 202 SITE 3 AC3 15 GOL A 204 HOH A 308 HOH A 313 HOH A 340 SITE 4 AC3 15 HOH A 360 GLU B 181 TYR B 182 SITE 1 AC4 7 LYS A 114 GLU A 117 0N8 A 203 HOH A 350 SITE 2 AC4 7 HOH A 385 GLU B 179 GLU B 181 SITE 1 AC5 5 ARG A 8 LEU A 12 ARG B 8 LEU B 12 SITE 2 AC5 5 LEU B 29 SITE 1 AC6 2 LYS B 91 NA B 204 SITE 1 AC7 2 GLU B 153 NA B 205 SITE 1 AC8 2 CL B 202 HOH B 394 SITE 1 AC9 3 GLU B 153 CL B 203 HOH B 393 CRYST1 108.116 108.116 54.087 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018489 0.00000