HEADER IMMUNE SYSTEM 24-AUG-16 5T33 TITLE CRYSTAL STRUCTURE OF STRAIN-SPECIFIC GLYCAN-DEPENDENT CD4 BINDING TITLE 2 SITE-DIRECTED NEUTRALIZING ANTIBODY CAP257-RH1, IN COMPLEX WITH HIV-1 TITLE 3 STRAIN RHPA GP120 CORE WITH AN OLIGOMANNOSE N276 GLYCAN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAP257-RH1 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAP257-RH1 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RHPA GP120 CORE; COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 TISSUE: PERIPHERAL BLOOD MONONUCLEAR CELLS; SOURCE 5 CELL: MEMORY B CELL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 TISSUE: PERIPHERAL BLOOD MONONUCLEAR CELLS; SOURCE 13 CELL: MEMORY B CELL; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS; SOURCE 19 ORGANISM_TAXID: 12721; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 23 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022 KEYWDS HIV, STRAIN-SPECIFIC, NEUTRALIZING ANTIBODY, CD4 BINDING SITE, N276 KEYWDS 2 GLYCAN, GLYCAN-FREE V5, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.K.WIBMER,J.GORMAN,P.D.KWONG REVDAT 6 04-OCT-23 5T33 1 HETSYN LINK REVDAT 5 29-JUL-20 5T33 1 COMPND JRNL REMARK DBREF REVDAT 5 2 1 HETNAM LINK SITE ATOM REVDAT 4 16-NOV-16 5T33 1 JRNL REVDAT 3 28-SEP-16 5T33 1 REMARK DBREF SEQADV ATOM REVDAT 3 2 1 HETATM REVDAT 2 14-SEP-16 5T33 1 SOURCE REVDAT 1 07-SEP-16 5T33 0 JRNL AUTH C.K.WIBMER,J.GORMAN,C.S.ANTHONY,N.N.MKHIZE,A.DRUZ,T.YORK, JRNL AUTH 2 S.D.SCHMIDT,P.LABUSCHAGNE,M.K.LOUDER,R.T.BAILER, JRNL AUTH 3 S.S.ABDOOL KARIM,J.R.MASCOLA,C.WILLIAMSON,P.L.MOORE, JRNL AUTH 4 P.D.KWONG,L.MORRIS JRNL TITL STRUCTURE OF AN N276-DEPENDENT HIV-1 NEUTRALIZING ANTIBODY JRNL TITL 2 TARGETING A RARE V5 GLYCAN HOLE ADJACENT TO THE CD4 BINDING JRNL TITL 3 SITE. JRNL REF J.VIROL. V. 90 10220 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 27581986 JRNL DOI 10.1128/JVI.01357-16 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 12967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6635 - 5.4855 0.98 3067 165 0.2224 0.2908 REMARK 3 2 5.4855 - 4.3549 0.88 2678 139 0.2108 0.2158 REMARK 3 3 4.3549 - 3.8047 0.86 2535 136 0.2285 0.2559 REMARK 3 4 3.8047 - 3.4569 0.83 2455 121 0.2622 0.3125 REMARK 3 5 3.4569 - 3.2092 0.54 1586 85 0.2880 0.3243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6245 REMARK 3 ANGLE : 0.563 8537 REMARK 3 CHIRALITY : 0.041 1015 REMARK 3 PLANARITY : 0.003 1055 REMARK 3 DIHEDRAL : 8.248 3566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5329 15.1393 -30.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.3740 T22: 0.4331 REMARK 3 T33: 0.8081 T12: 0.0696 REMARK 3 T13: -0.0411 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 3.1777 L22: 5.6557 REMARK 3 L33: 5.7936 L12: 0.1782 REMARK 3 L13: -0.2638 L23: -1.5042 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: -0.1677 S13: 0.4338 REMARK 3 S21: 0.1123 S22: 0.0560 S23: -0.0547 REMARK 3 S31: -0.2052 S32: 0.0651 S33: -0.0238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 121 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7070 18.4610 -52.2593 REMARK 3 T TENSOR REMARK 3 T11: 0.4001 T22: 0.4773 REMARK 3 T33: 0.5591 T12: -0.0893 REMARK 3 T13: -0.0314 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 8.4830 L22: 8.7891 REMARK 3 L33: 8.1018 L12: -2.4256 REMARK 3 L13: -1.9200 L23: 0.0849 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: 0.4220 S13: -0.0050 REMARK 3 S21: -0.0663 S22: -0.0684 S23: 0.4499 REMARK 3 S31: 0.5500 S32: 0.0594 S33: -0.0311 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4425 -5.3534 -37.3871 REMARK 3 T TENSOR REMARK 3 T11: 0.3506 T22: 0.4157 REMARK 3 T33: 1.1049 T12: 0.0008 REMARK 3 T13: -0.0152 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 3.3287 L22: 4.3125 REMARK 3 L33: 7.6789 L12: -0.2751 REMARK 3 L13: -2.5479 L23: 0.6407 REMARK 3 S TENSOR REMARK 3 S11: -0.2379 S12: -0.2050 S13: -0.6520 REMARK 3 S21: 0.1247 S22: 0.2809 S23: -0.0594 REMARK 3 S31: 0.2739 S32: 0.2378 S33: 0.0691 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 109 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0191 6.9027 -41.7581 REMARK 3 T TENSOR REMARK 3 T11: 0.4015 T22: 0.3155 REMARK 3 T33: 0.7004 T12: 0.0457 REMARK 3 T13: 0.1439 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 5.1743 L22: 8.7035 REMARK 3 L33: 7.4373 L12: 2.8800 REMARK 3 L13: 2.4297 L23: 2.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.0557 S13: -0.2184 REMARK 3 S21: 0.0645 S22: -0.2816 S23: -0.3317 REMARK 3 S31: -0.2849 S32: -0.0012 S33: 0.2342 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 45 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6711 1.6662 -4.2699 REMARK 3 T TENSOR REMARK 3 T11: 0.6560 T22: 0.8030 REMARK 3 T33: 0.5572 T12: -0.0206 REMARK 3 T13: 0.0185 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.3714 L22: 2.1146 REMARK 3 L33: 2.0022 L12: 0.9276 REMARK 3 L13: 0.9978 L23: -1.1961 REMARK 3 S TENSOR REMARK 3 S11: -0.2185 S12: -0.8533 S13: -0.1385 REMARK 3 S21: 0.4426 S22: -0.1509 S23: -0.0096 REMARK 3 S31: -0.1169 S32: -0.4044 S33: 0.3545 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13003 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JZZ, 4HPY, 1NL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH7.5) 8% PEG4000 10% REMARK 280 ISOPROPANOL 200U/ML ENDO H 25% 2-METHYL-2,4-PENTANEDIOL AS REMARK 280 CRYOPROTECTANT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.29800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.56950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.29800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.56950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 1 REMARK 465 SER L 212 REMARK 465 VAL G 44 REMARK 465 ARG G 298 REMARK 465 HIS G 299 REMARK 465 ASN G 300 REMARK 465 ASN G 301 REMARK 465 GLY G 302 REMARK 465 GLY G 303 REMARK 465 SER G 304 REMARK 465 GLY G 305 REMARK 465 SER G 306 REMARK 465 GLY G 307 REMARK 465 GLY G 308 REMARK 465 ASP G 309 REMARK 465 ILE G 310 REMARK 465 ARG G 311 REMARK 465 GLN G 312 REMARK 465 ALA G 313 REMARK 465 SER G 397 REMARK 465 THR G 398 REMARK 465 TRP G 399 REMARK 465 ASN G 400 REMARK 465 SER G 401 REMARK 465 THR G 402 REMARK 465 TRP G 403 REMARK 465 ASN G 404 REMARK 465 ASN G 405 REMARK 465 THR G 406 REMARK 465 GLU G 407 REMARK 465 GLY G 408 REMARK 465 SER G 409 REMARK 465 ASN G 410 REMARK 465 SER G 411 REMARK 465 THR G 412 REMARK 465 GLN G 440 REMARK 465 GLY G 441 REMARK 465 GLN G 442 REMARK 465 ILE G 443 REMARK 465 LYS G 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER H 156 OD1 ASN H 197 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 16 -176.57 -69.94 REMARK 500 SER H 28 84.37 -66.03 REMARK 500 SER H 54 -1.06 78.08 REMARK 500 LYS H 57 140.63 -177.22 REMARK 500 ASP H 72 107.67 -164.83 REMARK 500 ALA H 88 169.55 175.56 REMARK 500 ASP H 101 -75.75 -89.90 REMARK 500 SER H 132 76.76 -103.45 REMARK 500 SER H 188 12.38 -67.74 REMARK 500 CYS L 23 108.64 -168.29 REMARK 500 VAL L 47 -39.80 -130.77 REMARK 500 SER L 90 -157.25 -160.75 REMARK 500 ASN L 128 43.84 70.93 REMARK 500 ASP L 151 -116.70 58.51 REMARK 500 GLN L 167 -179.11 -69.95 REMARK 500 SER L 190 142.22 -170.90 REMARK 500 GLU L 198 127.27 -38.70 REMARK 500 GLU G 87 -63.43 -101.25 REMARK 500 LYS G 97 65.18 -151.43 REMARK 500 SER G 115 -81.30 -98.68 REMARK 500 GLN G 258 -57.41 64.51 REMARK 500 GLU G 269 -151.01 58.80 REMARK 500 SER G 274 132.99 -174.99 REMARK 500 ASN G 276 106.26 -165.82 REMARK 500 ILE G 333 134.18 -174.47 REMARK 500 PHE G 353 70.51 -114.69 REMARK 500 LYS G 354 43.56 35.64 REMARK 500 ASN G 356 -2.02 70.48 REMARK 500 VAL G 430 85.56 -68.36 REMARK 500 TYR G 435 -168.80 -121.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 5T33 H 1 216 PDB 5T33 5T33 1 216 DBREF 5T33 L 1 212 PDB 5T33 5T33 1 212 DBREF 5T33 G 44 492 PDB 5T33 5T33 44 492 SEQRES 1 H 223 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU PHE GLN SEQRES 2 H 223 PRO GLY ARG SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 H 223 PHE SER PHE ASN GLU LYS ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ILE ILE TRP SEQRES 5 H 223 TYR ASN SER ILE HIS LYS ASN TYR ALA ASP SER VAL LYS SEQRES 6 H 223 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 223 LEU TYR LEU GLN MET ASN SER LEU ARG ALA ASP ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ASN ALA GLY GLY GLY LYS TYR SEQRES 9 H 223 ASP TYR LEU ASP VAL TRP GLY ARG GLY THR THR VAL THR SEQRES 10 H 223 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 223 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 223 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 223 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 223 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 223 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 223 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 223 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 223 SER CYS SEQRES 1 L 214 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 L 214 PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP THR SEQRES 3 L 214 LEU SER THR LYS TRP SER TYR TRP CYS GLN GLN LYS SER SEQRES 4 L 214 GLY GLN ALA PRO VAL LEU VAL ILE TYR GLU GLY ASN LYS SEQRES 5 L 214 ARG PHE SER GLY THR PRO ALA LYS PHE SER GLY PHE HIS SEQRES 6 L 214 SER GLY THR MET ALA THR LEU THR ILE SER GLY ALA GLN SEQRES 7 L 214 VAL ASP ASP GLU ALA ASP TYR TYR CYS PHE SER THR ASP SEQRES 8 L 214 SER SER GLY GLN THR TRP VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 214 LEU THR VAL LEU ARG GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER SEQRES 1 G 357 VAL TRP LYS GLU ALA ASN THR THR LEU PHE CYS ALA SER SEQRES 2 G 357 ASP ALA LYS ALA TYR ASP THR GLU ALA HIS ASN VAL TRP SEQRES 3 G 357 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 357 GLU VAL VAL LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 357 TRP LYS ASN HIS MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 G 357 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 G 357 LEU THR GLY GLY VAL ILE THR GLN ALA CYS PRO LYS ILE SEQRES 8 G 357 SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO ALA SEQRES 9 G 357 GLY PHE ALA ILE LEU LYS CYS ASN ASP LYS LYS PHE ASN SEQRES 10 G 357 GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN CYS SEQRES 11 G 357 THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU LEU SEQRES 12 G 357 LEU ASN GLY SER LEU ALA GLU GLU GLU VAL VAL ILE ARG SEQRES 13 G 357 SER GLU ASN PHE THR ASN ASN VAL LYS ASN ILE ILE VAL SEQRES 14 G 357 GLN LEU ASN GLU SER VAL GLN ILE ASN CYS THR ARG HIS SEQRES 15 G 357 ASN ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG GLN SEQRES 16 G 357 ALA HIS CYS ASN ILE SER ARG GLU LYS TRP GLN ASN THR SEQRES 17 G 357 LEU LYS GLN ILE VAL LYS LYS LEU ARG GLU GLN PHE LYS SEQRES 18 G 357 ASN LYS THR ILE ALA PHE ALA PRO SER SER GLY GLY ASP SEQRES 19 G 357 PRO GLU ILE VAL MET HIS SER PHE ASN CYS ASN GLY GLU SEQRES 20 G 357 PHE PHE TYR CYS ASN THR THR LYS LEU PHE THR SER THR SEQRES 21 G 357 TRP ASN SER THR TRP ASN SER THR TRP ASN ASN THR GLU SEQRES 22 G 357 GLY SER ASN SER THR VAL ILE THR LEU PRO CYS ARG ILE SEQRES 23 G 357 ARG GLN ILE ILE ASN MET TRP GLN GLU VAL GLY LYS ALA SEQRES 24 G 357 MET TYR ALA PRO PRO ILE GLN GLY GLN ILE LYS CYS SER SEQRES 25 G 357 SER ASN ILE THR GLY LEU LEU LEU THR ARG ASP GLY GLY SEQRES 26 G 357 VAL ASP THR THR LYS GLU THR PHE ARG PRO GLY GLY GLY SEQRES 27 G 357 ASN MET LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR SEQRES 28 G 357 LYS VAL VAL ARG ILE GLU HET NAG A 1 27 HET NAG A 2 28 HET NAG B 1 27 HET NAG B 2 27 HET BMA B 3 21 HET MAN B 4 22 HET NAG C 1 27 HET NAG C 2 27 HET BMA C 3 20 HET MAN C 4 20 HET MAN C 5 22 HET MAN C 6 22 HET MAN C 7 22 HET NAG D 1 27 HET NAG D 2 27 HET NAG G1049 28 HET NAG G1088 28 HET NAG G1241 28 HET NAG G1289 28 HET NAG G1386 28 HET NAG G1448 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 14(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 5(C6 H12 O6) HELIX 1 AA1 SER H 28 LYS H 32 5 5 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 SER H 187 THR H 191 5 5 HELIX 4 AA4 GLY L 25 THR L 30 5 6 HELIX 5 AA5 GLN L 79 GLU L 83 5 5 HELIX 6 AA6 SER L 121 ALA L 127 1 7 HELIX 7 AA7 THR L 181 HIS L 188 1 8 HELIX 8 AA8 GLU G 64 CYS G 74 1 11 HELIX 9 AA9 ASN G 98 SER G 115 1 18 HELIX 10 AB1 SER G 334 PHE G 353 1 20 HELIX 11 AB2 ASP G 368 MET G 373 1 6 HELIX 12 AB3 THR G 387 PHE G 391 5 5 HELIX 13 AB4 MET G 475 SER G 481 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O VAL H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 LEU H 11 PHE H 12 0 SHEET 2 AA2 6 LEU H 100C VAL H 111 1 O THR H 110 N PHE H 12 SHEET 3 AA2 6 ALA H 88 ALA H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 LYS H 57 TYR H 59 -1 O ASN H 58 N ILE H 50 SHEET 1 AA3 4 PHE H 122 LEU H 124 0 SHEET 2 AA3 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA3 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA3 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA4 4 THR H 131 SER H 132 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA5 3 THR H 205 LYS H 210 -1 O LYS H 209 N CYS H 196 SHEET 1 AA6 5 SER L 9 VAL L 13 0 SHEET 2 AA6 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA6 5 ALA L 84 THR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA6 5 TYR L 34 GLN L 38 -1 N TYR L 34 O PHE L 89 SHEET 5 AA6 5 VAL L 45 ILE L 48 -1 O VAL L 45 N GLN L 37 SHEET 1 AA7 4 SER L 9 VAL L 13 0 SHEET 2 AA7 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA7 4 ALA L 84 THR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA8 3 ALA L 19 ILE L 21 0 SHEET 2 AA8 3 MET L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AA8 3 PHE L 62 SER L 67 -1 N PHE L 65 O THR L 72 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AA9 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AA9 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB1 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AB1 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB2 4 SER L 153 VAL L 155 0 SHEET 2 AB2 4 THR L 145 ALA L 150 -1 N TRP L 148 O VAL L 155 SHEET 3 AB2 4 TYR L 191 HIS L 197 -1 O SER L 192 N LYS L 149 SHEET 4 AB2 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 AB3 2 PHE G 53 SER G 56 0 SHEET 2 AB3 2 ILE G 215 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 AB4 4 VAL G 84 VAL G 85 0 SHEET 2 AB4 4 VAL G 242 VAL G 245 -1 O THR G 244 N VAL G 84 SHEET 3 AB4 4 PHE G 223 CYS G 228 -1 N LYS G 227 O SER G 243 SHEET 4 AB4 4 TYR G 486 ARG G 490 -1 O LYS G 487 N LEU G 226 SHEET 1 AB5 2 THR G 90 ASN G 94 0 SHEET 2 AB5 2 THR G 236 THR G 240 -1 O CYS G 239 N GLU G 91 SHEET 1 AB6 3 VAL G 120 LEU G 122 0 SHEET 2 AB6 3 GLY G 431 MET G 434 -1 O MET G 434 N VAL G 120 SHEET 3 AB6 3 ILE G 424 MET G 426 -1 N ILE G 424 O ALA G 433 SHEET 1 AB7 5 LEU G 259 LEU G 261 0 SHEET 2 AB7 5 SER G 446 ASP G 457 -1 O GLY G 451 N LEU G 260 SHEET 3 AB7 5 GLU G 466 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 4 AB7 5 ILE G 359 PHE G 361 1 N ALA G 360 O PHE G 468 SHEET 5 AB7 5 THR G 394 TRP G 395 -1 O TRP G 395 N ILE G 359 SHEET 1 AB8 6 VAL G 271 ARG G 273 0 SHEET 2 AB8 6 ILE G 284 GLN G 287 -1 O GLN G 287 N VAL G 271 SHEET 3 AB8 6 SER G 446 ASP G 457 -1 O LEU G 454 N ILE G 284 SHEET 4 AB8 6 VAL G 292 ASN G 295 -1 N ILE G 294 O SER G 447 SHEET 5 AB8 6 CYS G 331 ILE G 333 -1 O ASN G 332 N ASN G 295 SHEET 6 AB8 6 ILE G 414 LEU G 416 -1 O ILE G 414 N ILE G 333 SHEET 1 AB9 3 HIS G 374 CYS G 378 0 SHEET 2 AB9 3 GLU G 381 CYS G 385 -1 O PHE G 383 N PHE G 376 SHEET 3 AB9 3 CYS G 418 ARG G 419 -1 O ARG G 419 N TYR G 384 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS H 216 CYS L 211 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 5 CYS L 134 CYS L 193 1555 1555 2.03 SSBOND 6 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 7 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 8 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 9 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 10 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 11 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 12 CYS G 385 CYS G 418 1555 1555 2.03 LINK ND2 ASN G 49 C1 NAG G1049 1555 1555 1.44 LINK ND2 ASN G 88 C1 NAG G1088 1555 1555 1.45 LINK ND2 ASN G 234 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN G 241 C1 NAG G1241 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG G1289 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G1386 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG G1448 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.45 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.44 LINK O6 MAN C 4 C1 MAN C 6 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -4.45 CISPEP 2 GLU H 148 PRO H 149 0 0.20 CISPEP 3 SER L 56 GLY L 57 0 3.65 CISPEP 4 TYR L 140 PRO L 141 0 -3.27 CRYST1 68.176 71.139 190.596 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005247 0.00000