HEADER HYDROLASE 29-AUG-16 5T4C TITLE CRYSTAL STRUCTURE OF BHGH81 MUTANT IN COMPLEX WITH LAMINARO-HEXAOSE CAVEAT 5T4C BGC C 5 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125; SOURCE 5 GENE: BH0236; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS (ALPHA/BETA)6 BARREL, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.PLUVINAGE,A.B.BORASTON REVDAT 5 04-OCT-23 5T4C 1 HETSYN LINK REVDAT 4 29-JUL-20 5T4C 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-JAN-20 5T4C 1 REMARK REVDAT 2 27-MAR-19 5T4C 1 JRNL REVDAT 1 28-JUN-17 5T4C 0 JRNL AUTH B.PLUVINAGE,A.FILLO,P.MASSEL,A.B.BORASTON JRNL TITL STRUCTURAL ANALYSIS OF A FAMILY 81 GLYCOSIDE HYDROLASE JRNL TITL 2 IMPLICATES ITS RECOGNITION OF BETA-1,3-GLUCAN QUATERNARY JRNL TITL 3 STRUCTURE. JRNL REF STRUCTURE V. 25 1348 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28781080 JRNL DOI 10.1016/J.STR.2017.06.019 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 332 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6025 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 221 REMARK 3 SOLVENT ATOMS : 771 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6537 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5722 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8922 ; 1.372 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13146 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 777 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 341 ;36.293 ;24.282 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 931 ;11.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.711 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7477 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1619 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3072 ; 0.736 ; 1.314 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3071 ; 0.724 ; 1.313 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3861 ; 1.205 ; 1.966 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5T4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97971 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 82.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 10000, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 ASP A 779 REMARK 465 GLY A 780 REMARK 465 PRO A 781 REMARK 465 THR A 782 REMARK 465 ASN A 783 REMARK 465 PRO A 784 REMARK 465 ASP A 785 REMARK 465 PRO A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 PRO A 789 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 27 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 920 O HOH A 1587 1.96 REMARK 500 O HOH A 1285 O HOH A 1527 2.11 REMARK 500 O HOH A 911 O HOH A 1526 2.14 REMARK 500 O HOH A 1108 O HOH A 1559 2.14 REMARK 500 O HOH A 926 O HOH A 1595 2.15 REMARK 500 O HOH A 1395 O HOH A 1434 2.18 REMARK 500 O HOH A 921 O HOH A 1018 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 339 N GLY A 339 CA 0.178 REMARK 500 GLY A 339 CA GLY A 339 C -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 339 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 89 -107.99 -107.08 REMARK 500 PHE A 89 -107.99 -107.20 REMARK 500 ILE A 134 76.32 -107.96 REMARK 500 ASN A 157 -152.68 -139.05 REMARK 500 TRP A 159 -5.53 -149.99 REMARK 500 ASN A 167 80.75 -152.80 REMARK 500 HIS A 217 30.49 72.38 REMARK 500 ASP A 363 47.66 -99.31 REMARK 500 ASP A 363 41.57 -97.84 REMARK 500 ASN A 493 -109.84 -94.93 REMARK 500 MET A 506 50.34 -152.40 REMARK 500 GLN A 542 -74.41 -96.67 REMARK 500 SER A 658 -169.26 178.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 338 GLY A 339 137.31 REMARK 500 ILE A 338 GLY A 339 134.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE SUGAR BGC A 811 IS TRAPPED IN A TRANSITIONAL DISTORTED REMARK 600 CONFORMATION. THIS EXPLAINS THE CHIRALITY ERROR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T49 RELATED DB: PDB REMARK 900 RELATED ID: 5T4A RELATED DB: PDB REMARK 900 RELATED ID: 5T4G RELATED DB: PDB DBREF 5T4C A 28 789 UNP Q9KG76 Q9KG76_BACHD 28 789 SEQADV 5T4C MET A 7 UNP Q9KG76 INITIATING METHIONINE SEQADV 5T4C GLY A 8 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C SER A 9 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C SER A 10 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 11 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 12 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 13 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 14 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 15 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 16 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C SER A 17 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C SER A 18 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C GLY A 19 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C LEU A 20 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C VAL A 21 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C PRO A 22 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C ARG A 23 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C GLY A 24 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C SER A 25 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C HIS A 26 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C MET A 27 UNP Q9KG76 EXPRESSION TAG SEQADV 5T4C GLN A 542 UNP Q9KG76 GLU 542 ENGINEERED MUTATION SEQRES 1 A 783 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 783 LEU VAL PRO ARG GLY SER HIS MET HIS ALA VAL SER VAL SEQRES 3 A 783 GLY LYS GLY SER TYR ALA THR GLU PHE PRO GLU ILE ASP SEQRES 4 A 783 PHE GLY GLY ILE ASN ASP PRO GLY PHE ARG ASP GLN GLN SEQRES 5 A 783 GLY GLU PRO PRO ALA THR ILE TYR ARG SER ASP ARG VAL SEQRES 6 A 783 THR GLY PRO MET GLN THR ASN SER TRP TRP GLY SER LEU SEQRES 7 A 783 ALA VAL ASP ARG PHE SER MET ASN GLN TYR PRO HIS PRO SEQRES 8 A 783 PHE SER VAL ARG HIS ARG ALA GLU GLY LEU HIS VAL PHE SEQRES 9 A 783 TYR ASP ALA PRO HIS ASN MET VAL VAL HIS GLU ASN ARG SEQRES 10 A 783 GLU ALA GLY THR TRP HIS ILE HIS GLY ALA ILE GLY THR SEQRES 11 A 783 ASP PHE THR ILE LYS HIS SER GLY THR ALA ASN PHE GLU SEQRES 12 A 783 GLN ALA VAL VAL ASP ASP TYR ASN ASP TRP TYR VAL ARG SEQRES 13 A 783 GLY LEU LEU GLU ASN GLY ALA HIS GLN MET ALA ILE THR SEQRES 14 A 783 TYR GLY VAL GLY SER PRO TYR ILE PHE VAL GLU TYR GLU SEQRES 15 A 783 ASP GLY SER ALA VAL LEU ASP PHE ASP ILE ALA PRO ASP SEQRES 16 A 783 VAL TRP GLU MET ASN GLY HIS VAL ILE GLY PHE SER THR SEQRES 17 A 783 HIS ASP HIS LYS HIS TYR ALA ALA PHE ALA PRO PRO GLY SEQRES 18 A 783 GLN ASN TRP SER GLY ILE GLY SER LYS THR LEU THR ASN SEQRES 19 A 783 ASN ALA ASP TYR ILE ALA ILE ALA LYS LEU PRO GLU LYS SEQRES 20 A 783 ASP GLY ASN MET LEU ALA LYS PHE GLU GLN TYR ALA TYR SEQRES 21 A 783 SER VAL VAL ARG ASP ALA VAL ALA ASP TRP THR TYR ASP SEQRES 22 A 783 GLU ALA THR GLY THR VAL THR THR THR PHE GLU VAL THR SEQRES 23 A 783 THR GLU ALA LYS VAL GLN GLY ALA PRO ASP GLY THR ILE SEQRES 24 A 783 PHE ALA LEU TYR PRO HIS GLN TYR ARG HIS LEU ALA SER SEQRES 25 A 783 SER SER GLU ASN GLN LEU LEU GLN ASN TYR GLN TYR GLU SEQRES 26 A 783 ILE ILE ARG GLY THR MET ILE GLY LEU GLU GLY LYS ARG SEQRES 27 A 783 PHE THR THR GLU LEU THR TYR PRO GLY VAL LEU PRO SER SEQRES 28 A 783 LEU PRO ASP LEU GLY ASP TYR ASP ARG GLU ARG LEU ILE SEQRES 29 A 783 GLY TYR LEU HIS ASP ALA THR SER ASP TYR PRO THR GLY SEQRES 30 A 783 SER ASP THR TYR GLU LEU GLY LYS TYR ILE GLY LYS LEU SEQRES 31 A 783 ALA THR LEU ALA PRO ILE ALA ASP GLN MET GLY GLU TYR SEQRES 32 A 783 GLU LEU ALA GLU GLN PHE ARG GLY GLU LEU LYS ASP ILE SEQRES 33 A 783 LEU GLU ASP TRP LEU GLN ALA THR ASN ALA SER GLY GLN SEQRES 34 A 783 LEU LYS GLY LYS ASN LEU PHE TYR TYR ASN GLU ASN TRP SEQRES 35 A 783 GLY THR ILE LEU GLY TYR HIS ALA ALA HIS SER SER ALA SEQRES 36 A 783 THR ARG ILE ASN ASP HIS HIS PHE HIS TYR GLY TYR PHE SEQRES 37 A 783 VAL LYS ALA ALA ALA GLU ILE ALA ARG ALA ASP GLN GLU SEQRES 38 A 783 TRP ALA LYS SER GLU ASN TRP GLY GLY MET ILE ASP LEU SEQRES 39 A 783 LEU ILE ARG ASP PHE MET ALA ASP ARG ASP ASP ASP LEU SEQRES 40 A 783 PHE PRO TYR LEU ARG MET PHE ASP PRO TYR SER GLY ASN SEQRES 41 A 783 SER TRP ALA ASP GLY LEU ALA THR PHE ASP ALA GLY ASN SEQRES 42 A 783 ASN GLN GLN SER SER SER GLU ALA MET HIS ALA TRP THR SEQRES 43 A 783 ASN VAL ILE LEU TRP ALA GLU ALA THR GLY ASN LYS ALA SEQRES 44 A 783 LEU ARG ASP ARG ALA ILE TYR LEU TYR THR THR GLU MET SEQRES 45 A 783 SER ALA ILE ASN GLU TYR PHE PHE ASP VAL HIS GLN GLU SEQRES 46 A 783 ILE PHE PRO GLU GLU TYR GLY PRO GLU ILE VAL THR ILE SEQRES 47 A 783 ASN TRP GLY GLY LYS MET ASP HIS ALA THR TRP TRP ASN SEQRES 48 A 783 SER GLY LYS VAL GLU LYS TYR ALA ILE ASN TRP LEU PRO SEQRES 49 A 783 PHE HIS GLY GLY SER LEU TYR LEU GLY HIS HIS PRO ASP SEQRES 50 A 783 TYR VAL ASP ARG ALA TYR GLU GLU LEU ARG ARG ASP ILE SEQRES 51 A 783 GLY SER THR ASP TRP ASN LEU TRP SER ASN LEU VAL TRP SEQRES 52 A 783 MET TYR ARG ALA PHE THR ASN PRO ASP ASP ALA LEU GLN SEQRES 53 A 783 GLN MET GLU ALA SER ILE ASP ASP TYR GLY LEU PHE ASP SEQRES 54 A 783 PRO GLY ASN GLU LYS ILE ILE GLU ARG GLY SER THR LYS SEQRES 55 A 783 ALA GLN THR TYR HIS TRP ILE HIS ASN LEU ALA GLU LEU SEQRES 56 A 783 GLY ARG VAL ASP PRO THR VAL THR ALA ASN HIS PRO ILE SEQRES 57 A 783 TYR ALA VAL PHE ASN LYS ASN GLY ASN ARG THR TYR ILE SEQRES 58 A 783 VAL TYR ASN PHE SER ASP SER PRO ILE THR VAL GLN PHE SEQRES 59 A 783 SER ASP GLY HIS SER ILE GLN VAL GLU PRO HIS SER PHE SEQRES 60 A 783 ASN ILE GLY ASN GLY ASP GLY PRO THR ASN PRO ASP PRO SEQRES 61 A 783 SER GLU PRO HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET BGC B 5 11 HET BGC B 6 11 HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET BGC C 5 11 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET EDO A 816 4 HET EDO A 817 4 HET EDO A 818 4 HET EDO A 819 4 HET EDO A 820 4 HET EDO A 821 4 HET EDO A 822 4 HET EDO A 823 4 HET PO4 A 824 5 HET PO4 A 825 5 HET PO4 A 826 5 HET PO4 A 827 5 HET PO4 A 828 5 HET PO4 A 829 5 HET PO4 A 830 5 HET PO4 A 831 5 HET PO4 A 832 5 HET PO4 A 833 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC 11(C6 H12 O6) FORMUL 4 EDO 12(C2 H6 O2) FORMUL 16 PO4 10(O4 P 3-) FORMUL 26 HOH *771(H2 O) HELIX 1 AA1 ASP A 51 GLN A 58 1 8 HELIX 2 AA2 GLY A 82 ASP A 87 1 6 HELIX 3 AA3 ALA A 113 MET A 117 5 5 HELIX 4 AA4 ASP A 254 ALA A 265 1 12 HELIX 5 AA5 TYR A 309 ARG A 314 1 6 HELIX 6 AA6 HIS A 315 LEU A 316 5 2 HELIX 7 AA7 ALA A 317 LEU A 324 5 8 HELIX 8 AA8 ASP A 365 ALA A 376 1 12 HELIX 9 AA9 THR A 377 ASP A 379 5 3 HELIX 10 AB1 ASP A 385 MET A 406 1 22 HELIX 11 AB2 GLU A 408 LEU A 427 1 20 HELIX 12 AB3 ASP A 466 ASP A 485 1 20 HELIX 13 AB4 TRP A 494 ALA A 507 1 14 HELIX 14 AB5 SER A 543 THR A 561 1 19 HELIX 15 AB6 ASN A 563 PHE A 585 1 23 HELIX 16 AB7 VAL A 621 ILE A 626 1 6 HELIX 17 AB8 GLY A 634 HIS A 640 5 7 HELIX 18 AB9 HIS A 641 GLY A 657 1 17 HELIX 19 AC1 TRP A 664 ALA A 673 1 10 HELIX 20 AC2 ASN A 676 ILE A 688 1 13 HELIX 21 AC3 THR A 707 GLY A 722 1 16 SHEET 1 AA1 2 ALA A 29 VAL A 32 0 SHEET 2 AA1 2 GLY A 35 ALA A 38 -1 O TYR A 37 N VAL A 30 SHEET 1 AA2 5 SER A 99 ARG A 103 0 SHEET 2 AA2 5 GLY A 106 PHE A 110 -1 O HIS A 108 N ARG A 101 SHEET 3 AA2 5 PHE A 138 HIS A 142 -1 O ILE A 140 N LEU A 107 SHEET 4 AA2 5 ALA A 192 ASP A 195 -1 O VAL A 193 N LYS A 141 SHEET 5 AA2 5 THR A 237 ASN A 240 -1 O LEU A 238 N LEU A 194 SHEET 1 AA3 5 VAL A 118 ASN A 122 0 SHEET 2 AA3 5 THR A 127 HIS A 131 -1 O THR A 127 N ASN A 122 SHEET 3 AA3 5 LYS A 609 HIS A 612 -1 O MET A 610 N ILE A 130 SHEET 4 AA3 5 ILE A 604 TRP A 606 -1 N TRP A 606 O LYS A 609 SHEET 5 AA3 5 ASN A 540 GLN A 541 -1 N GLN A 541 O ASN A 605 SHEET 1 AA4 8 GLN A 150 TYR A 156 0 SHEET 2 AA4 8 TYR A 160 ASN A 167 -1 O ARG A 162 N ASP A 154 SHEET 3 AA4 8 HIS A 170 GLY A 177 -1 O ILE A 174 N GLY A 163 SHEET 4 AA4 8 TYR A 182 GLU A 188 -1 O GLU A 186 N ALA A 173 SHEET 5 AA4 8 TYR A 244 LYS A 249 -1 O ILE A 245 N VAL A 185 SHEET 6 AA4 8 HIS A 219 PHE A 223 -1 N ALA A 221 O ALA A 248 SHEET 7 AA4 8 VAL A 209 SER A 213 -1 N PHE A 212 O TYR A 220 SHEET 8 AA4 8 ASP A 201 MET A 205 -1 N GLU A 204 O GLY A 211 SHEET 1 AA5 3 SER A 267 TYR A 278 0 SHEET 2 AA5 3 THR A 284 ALA A 295 -1 O THR A 288 N ASP A 275 SHEET 3 AA5 3 ARG A 344 THR A 350 -1 O PHE A 345 N PHE A 289 SHEET 1 AA6 2 THR A 304 ILE A 305 0 SHEET 2 AA6 2 GLU A 341 GLY A 342 -1 O GLY A 342 N THR A 304 SHEET 1 AA7 2 GLN A 329 ILE A 332 0 SHEET 2 AA7 2 GLY A 335 ILE A 338 -1 O MET A 337 N TYR A 330 SHEET 1 AA8 2 LEU A 441 ASN A 445 0 SHEET 2 AA8 2 THR A 450 TYR A 454 -1 O LEU A 452 N TYR A 443 SHEET 1 AA9 4 ARG A 723 VAL A 724 0 SHEET 2 AA9 4 TYR A 735 LYS A 740 -1 O ASN A 739 N ARG A 723 SHEET 3 AA9 4 ASN A 743 ASN A 750 -1 O ILE A 747 N ALA A 736 SHEET 4 AA9 4 SER A 772 PHE A 773 -1 O SER A 772 N ASN A 750 SHEET 1 AB1 2 ILE A 756 GLN A 759 0 SHEET 2 AB1 2 SER A 765 VAL A 768 -1 O VAL A 768 N ILE A 756 LINK O3 BGC B 1 C1 BGC B 2 1555 1555 1.44 LINK O3 BGC B 2 C1 BGC B 3 1555 1555 1.42 LINK O3 BGC B 3 C1 BGC B 4 1555 1555 1.44 LINK O3 BGC B 4 C1 BGC B 5 1555 1555 1.41 LINK O3 BGC B 5 C1 BGC B 6 1555 1555 1.42 LINK O3 BGC C 1 C1 BGC C 2 1555 1555 1.42 LINK O3 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O3 BGC C 3 C1 BGC C 4 1555 1555 1.44 LINK O3 BGC C 4 C1 BGC C 5 1555 1555 1.43 CISPEP 1 HIS A 96 PRO A 97 0 17.30 CISPEP 2 GLY A 339 LEU A 340 0 -17.49 CISPEP 3 TYR A 454 HIS A 455 0 3.50 CISPEP 4 LEU A 629 PRO A 630 0 -10.16 CRYST1 65.480 96.500 156.870 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006375 0.00000