HEADER TRANSFERASE 29-AUG-16 5T4L TITLE PLP AND GABA TRIGGER GABR-MEDIATED TRANSCRIPTION REGULATION IN TITLE 2 BACILLUS SUBSIDIES VIA EXTERNAL ALDIMINE FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPAT,TRANSAMINASE A; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GABR, MOCR, PLP, GABA, EXTERNAL ALDIMINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.SANISHVILI,B.R.BELITSKY,J.I.JUNCOSA,H.V.LE,H.J.S.LEHRER, AUTHOR 2 M.FARLEY,R.B.SILVERMAN,G.A.PETSKO,D.RINGE,D.LIU REVDAT 6 04-OCT-23 5T4L 1 REMARK REVDAT 5 25-DEC-19 5T4L 1 REMARK REVDAT 4 27-SEP-17 5T4L 1 REMARK REVDAT 3 19-APR-17 5T4L 1 JRNL REVDAT 2 12-APR-17 5T4L 1 JRNL REVDAT 1 29-MAR-17 5T4L 0 JRNL AUTH R.WU,R.SANISHVILI,B.R.BELITSKY,J.I.JUNCOSA,H.V.LE, JRNL AUTH 2 H.J.LEHRER,M.FARLEY,R.B.SILVERMAN,G.A.PETSKO,D.RINGE,D.LIU JRNL TITL PLP AND GABA TRIGGER GABR-MEDIATED TRANSCRIPTION REGULATION JRNL TITL 2 IN BACILLUS SUBTILIS VIA EXTERNAL ALDIMINE FORMATION. JRNL REF PROC. NATL. ACAD. SCI. V. 114 3891 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28348215 JRNL DOI 10.1073/PNAS.1703019114 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 77075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9916 - 4.6476 1.00 2831 149 0.1586 0.1698 REMARK 3 2 4.6476 - 3.6913 1.00 2753 132 0.1245 0.1545 REMARK 3 3 3.6913 - 3.2254 1.00 2724 139 0.1384 0.1566 REMARK 3 4 3.2254 - 2.9308 1.00 2694 140 0.1526 0.1682 REMARK 3 5 2.9308 - 2.7209 1.00 2662 162 0.1559 0.1557 REMARK 3 6 2.7209 - 2.5606 1.00 2681 148 0.1496 0.1595 REMARK 3 7 2.5606 - 2.4324 1.00 2664 152 0.1504 0.1592 REMARK 3 8 2.4324 - 2.3266 1.00 2653 139 0.1466 0.1466 REMARK 3 9 2.3266 - 2.2371 1.00 2678 141 0.1428 0.1460 REMARK 3 10 2.2371 - 2.1599 1.00 2644 152 0.1352 0.1586 REMARK 3 11 2.1599 - 2.0924 1.00 2683 128 0.1409 0.1561 REMARK 3 12 2.0924 - 2.0326 1.00 2662 137 0.1388 0.1636 REMARK 3 13 2.0326 - 1.9791 1.00 2623 139 0.1452 0.1634 REMARK 3 14 1.9791 - 1.9308 1.00 2678 140 0.1469 0.1730 REMARK 3 15 1.9308 - 1.8869 1.00 2618 156 0.1525 0.1726 REMARK 3 16 1.8869 - 1.8468 1.00 2658 149 0.1496 0.1613 REMARK 3 17 1.8468 - 1.8098 1.00 2664 129 0.1427 0.1555 REMARK 3 18 1.8098 - 1.7757 1.00 2633 133 0.1379 0.1551 REMARK 3 19 1.7757 - 1.7440 1.00 2649 139 0.1383 0.1621 REMARK 3 20 1.7440 - 1.7144 1.00 2654 141 0.1450 0.1593 REMARK 3 21 1.7144 - 1.6868 1.00 2666 116 0.1499 0.1638 REMARK 3 22 1.6868 - 1.6608 1.00 2621 146 0.1625 0.1857 REMARK 3 23 1.6608 - 1.6364 1.00 2636 138 0.1752 0.2110 REMARK 3 24 1.6364 - 1.6134 0.99 2646 147 0.1966 0.2512 REMARK 3 25 1.6134 - 1.5916 0.98 2574 128 0.2141 0.2296 REMARK 3 26 1.5916 - 1.5709 0.94 2485 141 0.2408 0.2838 REMARK 3 27 1.5709 - 1.5513 0.85 2219 108 0.2761 0.2953 REMARK 3 28 1.5513 - 1.5326 0.69 1842 111 0.3157 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3626 REMARK 3 ANGLE : 1.128 5003 REMARK 3 CHIRALITY : 0.047 549 REMARK 3 PLANARITY : 0.007 673 REMARK 3 DIHEDRAL : 14.242 1454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6338 -25.8999 16.4152 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.3097 REMARK 3 T33: 0.2872 T12: 0.0217 REMARK 3 T13: -0.0338 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.3130 L22: 1.2326 REMARK 3 L33: 2.6180 L12: 0.3091 REMARK 3 L13: -0.7519 L23: -1.5876 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.1182 S13: -0.1277 REMARK 3 S21: 0.2064 S22: -0.0642 S23: -0.3027 REMARK 3 S31: -0.1711 S32: 0.3649 S33: 0.0287 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.7153 -10.5895 10.9825 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1473 REMARK 3 T33: 0.1717 T12: 0.0159 REMARK 3 T13: 0.0063 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.2627 L22: 0.6679 REMARK 3 L33: 0.9277 L12: 0.0089 REMARK 3 L13: -0.2097 L23: 0.1225 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.0279 S13: 0.0473 REMARK 3 S21: -0.0714 S22: 0.0084 S23: 0.0318 REMARK 3 S31: -0.1205 S32: -0.0402 S33: -0.0737 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6900 -34.5504 -0.3509 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1702 REMARK 3 T33: 0.1877 T12: 0.0115 REMARK 3 T13: -0.0218 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.9142 L22: 1.1486 REMARK 3 L33: 1.0638 L12: 0.2707 REMARK 3 L13: -0.2372 L23: -0.0428 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.1320 S13: -0.1600 REMARK 3 S21: -0.1887 S22: 0.0088 S23: -0.0895 REMARK 3 S31: 0.1368 S32: -0.0210 S33: 0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8786 -19.7985 2.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1573 REMARK 3 T33: 0.1373 T12: 0.0099 REMARK 3 T13: -0.0195 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4767 L22: 0.8054 REMARK 3 L33: 0.6003 L12: 0.0058 REMARK 3 L13: -0.1300 L23: -0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.1092 S13: -0.0091 REMARK 3 S21: -0.1461 S22: -0.0052 S23: 0.0429 REMARK 3 S31: 0.0012 S32: -0.0377 S33: -0.0410 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6902 -21.4026 -4.0953 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2192 REMARK 3 T33: 0.2441 T12: 0.0084 REMARK 3 T13: 0.0564 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.3261 L22: 0.9085 REMARK 3 L33: 0.8633 L12: -0.4717 REMARK 3 L13: -0.0181 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.1567 S13: -0.0384 REMARK 3 S21: -0.1217 S22: -0.0452 S23: -0.2470 REMARK 3 S31: -0.0132 S32: 0.1339 S33: -0.0273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1AMQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM POTASSIUM PHOSPHATE 43% AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.67100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.67100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.45650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.45800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.45650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.45800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.67100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.45650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.45800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.67100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.45650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.45800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.91300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.67100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 904 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 293 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 753 O HOH A 926 1.92 REMARK 500 O HOH A 860 O HOH A 901 2.00 REMARK 500 O HOH A 853 O HOH A 940 2.02 REMARK 500 O HOH A 507 O HOH A 881 2.03 REMARK 500 O HOH A 839 O HOH A 941 2.05 REMARK 500 O HOH A 842 O HOH A 866 2.06 REMARK 500 OE2 GLU A 310 O HOH A 501 2.08 REMARK 500 O HOH A 531 O HOH A 751 2.10 REMARK 500 O HOH A 875 O HOH A 933 2.14 REMARK 500 OD1 ASP A 18 NH1 ARG A 21 2.16 REMARK 500 O HOH A 930 O HOH A 932 2.16 REMARK 500 O HOH A 874 O HOH A 887 2.16 REMARK 500 O HOH A 979 O HOH A 1007 2.16 REMARK 500 O HOH A 702 O HOH A 941 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 550 O HOH A 550 3455 1.72 REMARK 500 O HOH A 521 O HOH A 521 3455 1.96 REMARK 500 O HOH A 640 O HOH A 909 6445 2.00 REMARK 500 O HOH A 720 O HOH A 898 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 149 -57.06 -150.31 REMARK 500 ALA A 218 -69.81 -92.32 REMARK 500 TYR A 251 -61.25 -29.56 REMARK 500 ARG A 254 73.96 61.66 REMARK 500 ASN A 282 -75.58 -110.12 REMARK 500 SER A 284 -58.25 78.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 77E A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T4K RELATED DB: PDB DBREF 5T4L A 1 396 UNP P00509 AAT_ECOLI 1 396 SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER LYS ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU HET 77E A 401 23 HETNAM 77E (4R)-4-AMINO-6-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 77E METHYL]PYRIDIN-4-YL}HEXANOIC ACID FORMUL 2 77E C13 H21 N2 O7 P FORMUL 3 HOH *510(H2 O) HELIX 1 AA1 ASP A 11 ASP A 23 1 13 HELIX 2 AA2 LEU A 46 GLU A 60 1 15 HELIX 3 AA3 ILE A 71 GLY A 84 1 14 HELIX 4 AA4 SER A 87 ASP A 92 1 6 HELIX 5 AA5 PRO A 101 THR A 118 1 18 HELIX 6 AA6 PRO A 131 ALA A 140 1 10 HELIX 7 AA7 ASP A 158 ASN A 167 1 10 HELIX 8 AA8 THR A 190 GLY A 205 1 16 HELIX 9 AA9 GLY A 220 ALA A 225 1 6 HELIX 10 AB1 ALA A 225 HIS A 235 1 11 HELIX 11 AB2 LEU A 250 ARG A 254 5 5 HELIX 12 AB3 ASP A 264 ALA A 281 1 18 HELIX 13 AB4 PRO A 287 SER A 299 1 13 HELIX 14 AB5 ASN A 300 LYS A 332 1 33 HELIX 15 AB6 SER A 339 GLN A 344 1 6 HELIX 16 AB7 THR A 354 GLY A 366 1 13 HELIX 17 AB8 ALA A 378 MET A 380 5 3 HELIX 18 AB9 THR A 381 LEU A 396 1 16 SHEET 1 AA1 2 ILE A 29 ASN A 30 0 SHEET 2 AA1 2 VAL A 367 TYR A 368 1 O TYR A 368 N ILE A 29 SHEET 1 AA2 7 ALA A 95 THR A 100 0 SHEET 2 AA2 7 GLY A 256 VAL A 261 -1 O LEU A 260 N ARG A 96 SHEET 3 AA2 7 LEU A 238 SER A 243 -1 N VAL A 240 O THR A 259 SHEET 4 AA2 7 LEU A 207 PHE A 212 1 N PHE A 210 O ALA A 241 SHEET 5 AA2 7 VAL A 174 HIS A 178 1 N PHE A 177 O ASP A 211 SHEET 6 AA2 7 ARG A 122 ASN A 127 1 N TRP A 124 O LEU A 176 SHEET 7 AA2 7 GLU A 143 ALA A 148 1 O GLU A 143 N VAL A 123 SHEET 1 AA3 2 TYR A 150 ASP A 151 0 SHEET 2 AA3 2 THR A 156 LEU A 157 -1 O THR A 156 N ASP A 151 SHEET 1 AA4 2 PHE A 348 PHE A 350 0 SHEET 2 AA4 2 ARG A 374 ASN A 376 -1 O VAL A 375 N SER A 349 LINK NZ LYS A 246 C5 77E A 401 1555 1555 1.49 CISPEP 1 LEU A 14 GLY A 15 0 10.74 CISPEP 2 PRO A 26 GLY A 27 0 3.54 CISPEP 3 ASN A 127 PRO A 128 0 4.20 CISPEP 4 ASN A 183 PRO A 184 0 18.02 SITE 1 AC1 18 GLY A 34 TYR A 65 GLY A 102 GLY A 103 SITE 2 AC1 18 THR A 104 TRP A 130 ASN A 183 ASP A 211 SITE 3 AC1 18 TYR A 214 SER A 243 SER A 245 LYS A 246 SITE 4 AC1 18 ARG A 254 ARG A 280 HOH A 544 HOH A 606 SITE 5 AC1 18 HOH A 654 HOH A 713 CRYST1 84.913 154.916 79.342 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012604 0.00000