HEADER SUGAR BINDING PROTEIN 30-AUG-16 5T52 TITLE LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BFL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAUHINIA FORFICATA; SOURCE 3 ORGANISM_COMMON: BRAZILIAN ORCHID-TREE; SOURCE 4 ORGANISM_TAXID: 413686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEGUME LECTIN, CONCANAVALIN A, GALNAC-SPECIFIC, LIGAND-FREE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 6 06-MAR-24 5T52 1 HETSYN REVDAT 5 29-JUL-20 5T52 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 01-NOV-17 5T52 1 REMARK REVDAT 3 15-FEB-17 5T52 1 JRNL REVDAT 2 08-FEB-17 5T52 1 JRNL REVDAT 1 28-DEC-16 5T52 0 JRNL AUTH J.LUBKOWSKI,S.V.DURBIN,M.C.SILVA,D.FARNSWORTH, JRNL AUTH 2 J.C.GILDERSLEEVE,M.L.OLIVA,A.WLODAWER JRNL TITL STRUCTURAL ANALYSIS AND UNIQUE MOLECULAR RECOGNITION JRNL TITL 2 PROPERTIES OF A BAUHINIA FORFICATA LECTIN THAT INHIBITS JRNL TITL 3 CANCER CELL GROWTH. JRNL REF FEBS J. V. 284 429 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27973758 JRNL DOI 10.1111/FEBS.13989 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 53241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3836 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3462 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5236 ; 2.102 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7951 ; 1.581 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 7.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;34.572 ;23.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;13.018 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4399 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1838 ; 1.045 ; 0.841 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1837 ; 1.022 ; 0.839 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2296 ; 1.554 ; 1.256 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 229 REMARK 3 RESIDUE RANGE : A 301 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7260 23.0220 38.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0051 REMARK 3 T33: 0.0166 T12: 0.0051 REMARK 3 T13: -0.0118 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.4294 L22: 0.1357 REMARK 3 L33: 0.4565 L12: 0.0192 REMARK 3 L13: 0.1742 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.0068 S13: -0.0139 REMARK 3 S21: 0.0053 S22: -0.0107 S23: 0.0021 REMARK 3 S31: -0.0112 S32: -0.0230 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 229 REMARK 3 RESIDUE RANGE : B 301 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7220 22.2790 11.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0448 REMARK 3 T33: 0.0057 T12: 0.0102 REMARK 3 T13: -0.0082 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3708 L22: 0.2998 REMARK 3 L33: 0.5986 L12: -0.0265 REMARK 3 L13: 0.1295 L23: 0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0387 S13: 0.0080 REMARK 3 S21: 0.0089 S22: -0.0168 S23: -0.0061 REMARK 3 S31: -0.0294 S32: -0.0419 S33: 0.0342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5T52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 - 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BLOCKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 5-8 MG/ML IN REMARK 280 0.05 M HEPES BUFFER (PH 7.5) AND 0.15 M NACL, PRECIPITANT: 12% REMARK 280 (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (PH 7.5), REMARK 280 DROPLETS RATIO: 1:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.65250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.47450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.65250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.47450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER AS DETERMINED BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 ARG A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 LEU B 230 REMARK 465 LEU B 231 REMARK 465 ARG B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 ALA B 235 REMARK 465 ARG B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 15 O HOH B 401 2.08 REMARK 500 O HOH A 455 O HOH A 460 2.08 REMARK 500 NH2 ARG A 146 O HOH A 401 2.15 REMARK 500 NH2 ARG B 25 O HOH B 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU B 14 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 193 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 -159.95 -103.26 REMARK 500 GLN A 212 148.43 -175.37 REMARK 500 LYS B 92 -151.83 -103.69 REMARK 500 TYR B 94 -175.92 -69.34 REMARK 500 GLN B 212 143.90 -175.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 ASP A 120 OD2 94.4 REMARK 620 3 GLU A 129 OE1 165.3 82.1 REMARK 620 4 HOH A 419 O 80.8 95.1 85.2 REMARK 620 5 HOH A 449 O 89.1 169.6 96.8 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 54.3 REMARK 620 3 TRP A 122 O 73.7 115.6 REMARK 620 4 ASN A 124 OD1 152.1 152.9 87.7 REMARK 620 5 GLU A 129 OE2 109.0 84.4 79.0 86.9 REMARK 620 6 HOH A 454 O 115.0 75.1 169.2 81.9 102.9 REMARK 620 7 HOH A 456 O 73.6 106.8 89.6 86.0 166.8 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 OE2 REMARK 620 2 ASP B 120 OD2 91.3 REMARK 620 3 GLU B 129 OE1 166.0 84.2 REMARK 620 4 HOH B 469 O 82.2 97.0 85.2 REMARK 620 5 HOH B 496 O 88.4 164.3 99.5 98.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 ASP B 120 OD2 52.6 REMARK 620 3 TRP B 122 O 76.8 117.2 REMARK 620 4 ASN B 124 OD1 152.6 153.6 85.9 REMARK 620 5 GLU B 129 OE2 108.0 84.4 78.1 88.7 REMARK 620 6 HOH B 433 O 74.5 105.6 91.4 84.9 168.2 REMARK 620 7 HOH B 498 O 112.1 72.3 170.3 84.3 101.9 87.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T50 RELATED DB: PDB REMARK 900 RELATED ID: 5T54 RELATED DB: PDB REMARK 900 RELATED ID: 5T55 RELATED DB: PDB REMARK 900 RELATED ID: 5T5J RELATED DB: PDB REMARK 900 RELATED ID: 5T5L RELATED DB: PDB REMARK 900 RELATED ID: 5T5O RELATED DB: PDB REMARK 900 RELATED ID: 5T5P RELATED DB: PDB DBREF 5T52 A 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T52 B 1 233 UNP P86993 LECT_BAUFO 1 233 SEQADV 5T52 GLY A 234 UNP P86993 EXPRESSION TAG SEQADV 5T52 ALA A 235 UNP P86993 EXPRESSION TAG SEQADV 5T52 ARG A 236 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 237 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 238 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 239 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 240 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 241 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 242 UNP P86993 EXPRESSION TAG SEQADV 5T52 GLY B 234 UNP P86993 EXPRESSION TAG SEQADV 5T52 ALA B 235 UNP P86993 EXPRESSION TAG SEQADV 5T52 ARG B 236 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 237 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 238 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 239 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 240 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 241 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 242 UNP P86993 EXPRESSION TAG SEQRES 1 A 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 A 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 A 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 A 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 A 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 A 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 A 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 A 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 A 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 A 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 A 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 A 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 A 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 A 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 A 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 A 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 A 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 A 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 A 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 B 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 B 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 B 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 B 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 B 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 B 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 B 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 B 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 B 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 B 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 B 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 B 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 B 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 B 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 B 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 B 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 B 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 B 242 ALA ARG HIS HIS HIS HIS HIS HIS HET CA A 301 1 HET CA A 302 1 HET NGA A 303 15 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CA B 301 1 HET CA B 302 1 HET A2G B 303 15 HET EDO B 304 4 HET EDO B 305 4 HETNAM CA CALCIUM ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN EDO ETHYLENE GLYCOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 CA 4(CA 2+) FORMUL 5 NGA C8 H15 N O6 FORMUL 6 EDO 6(C2 H6 O2) FORMUL 12 A2G C8 H15 N O6 FORMUL 15 HOH *359(H2 O) HELIX 1 AA1 TYR A 94 LEU A 98 5 5 HELIX 2 AA2 GLU A 102 ALA A 106 5 5 HELIX 3 AA3 ASN A 108 ASN A 112 5 5 HELIX 4 AA4 GLN A 151 PHE A 156 1 6 HELIX 5 AA5 ASP A 193 PHE A 198 1 6 HELIX 6 AA6 TYR B 94 LEU B 98 5 5 HELIX 7 AA7 GLU B 102 ALA B 106 5 5 HELIX 8 AA8 ASN B 108 ASN B 112 5 5 HELIX 9 AA9 GLN B 151 PHE B 156 1 6 HELIX 10 AB1 ASP B 193 PHE B 198 1 6 SHEET 1 AA1 4 LEU A 3 TYR A 7 0 SHEET 2 AA1 4 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA1 4 THR A 28 GLN A 30 -1 N LEU A 29 O ILE A 218 SHEET 4 AA1 4 SER A 23 ARG A 25 -1 N SER A 23 O GLN A 30 SHEET 1 AA2 6 LEU A 3 TYR A 7 0 SHEET 2 AA2 6 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA2 6 THR A 59 THR A 71 -1 N ARG A 70 O THR A 215 SHEET 4 AA2 6 ALA A 161 ASP A 168 -1 O VAL A 165 N THR A 63 SHEET 5 AA2 6 ILE A 173 THR A 179 -1 O THR A 179 N THR A 162 SHEET 6 AA2 6 ASN A 185 VAL A 191 -1 O LEU A 188 N ALA A 176 SHEET 1 AA3 4 ILE A 16 GLY A 20 0 SHEET 2 AA3 4 ARG A 44 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA3 4 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA3 4 PHE A 54 GLN A 55 -1 N PHE A 54 O VAL A 202 SHEET 1 AA4 7 ILE A 16 GLY A 20 0 SHEET 2 AA4 7 ARG A 44 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA4 7 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA4 7 ALA A 77 ALA A 85 -1 N PHE A 83 O GLY A 205 SHEET 5 AA4 7 VAL A 115 ASP A 120 -1 O PHE A 119 N PHE A 80 SHEET 6 AA4 7 HIS A 134 VAL A 139 -1 O ASP A 138 N ALA A 116 SHEET 7 AA4 7 ARG A 146 ARG A 149 -1 O ARG A 146 N ILE A 137 SHEET 1 AA5 4 LEU B 3 TYR B 7 0 SHEET 2 AA5 4 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA5 4 THR B 28 GLN B 30 -1 N LEU B 29 O ILE B 218 SHEET 4 AA5 4 SER B 23 ARG B 25 -1 N SER B 23 O GLN B 30 SHEET 1 AA6 6 LEU B 3 TYR B 7 0 SHEET 2 AA6 6 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA6 6 THR B 59 THR B 71 -1 N VAL B 68 O TYR B 217 SHEET 4 AA6 6 ALA B 161 ASP B 168 -1 O VAL B 165 N THR B 63 SHEET 5 AA6 6 ILE B 173 THR B 179 -1 O THR B 175 N GLY B 166 SHEET 6 AA6 6 ASN B 185 VAL B 191 -1 O LEU B 188 N ALA B 176 SHEET 1 AA7 4 ILE B 16 GLY B 20 0 SHEET 2 AA7 4 ALA B 45 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA7 4 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA7 4 PHE B 54 GLN B 55 -1 N PHE B 54 O VAL B 202 SHEET 1 AA8 7 ILE B 16 GLY B 20 0 SHEET 2 AA8 7 ALA B 45 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA8 7 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA8 7 ALA B 77 ALA B 85 -1 N PHE B 83 O GLY B 205 SHEET 5 AA8 7 VAL B 115 ASP B 120 -1 O PHE B 119 N PHE B 80 SHEET 6 AA8 7 HIS B 134 VAL B 139 -1 O ASP B 138 N ALA B 116 SHEET 7 AA8 7 ARG B 146 ARG B 149 -1 O ARG B 146 N ILE B 137 LINK OE2 GLU A 118 CA CA A 301 1555 1555 2.28 LINK OD2 ASP A 120 CA CA A 301 1555 1555 2.23 LINK OD1 ASP A 120 CA CA A 302 1555 1555 2.44 LINK OD2 ASP A 120 CA CA A 302 1555 1555 2.38 LINK O TRP A 122 CA CA A 302 1555 1555 2.38 LINK OD1 ASN A 124 CA CA A 302 1555 1555 2.31 LINK OE1 GLU A 129 CA CA A 301 1555 1555 2.34 LINK OE2 GLU A 129 CA CA A 302 1555 1555 2.45 LINK CA CA A 301 O HOH A 419 1555 1555 2.40 LINK CA CA A 301 O HOH A 449 1555 1555 2.22 LINK CA CA A 302 O HOH A 454 1555 1555 2.40 LINK CA CA A 302 O HOH A 456 1555 1555 2.43 LINK OE2 GLU B 118 CA CA B 301 1555 1555 2.29 LINK OD2 ASP B 120 CA CA B 301 1555 1555 2.26 LINK OD1 ASP B 120 CA CA B 302 1555 1555 2.56 LINK OD2 ASP B 120 CA CA B 302 1555 1555 2.49 LINK O TRP B 122 CA CA B 302 1555 1555 2.25 LINK OD1 ASN B 124 CA CA B 302 1555 1555 2.28 LINK OE1 GLU B 129 CA CA B 301 1555 1555 2.34 LINK OE2 GLU B 129 CA CA B 302 1555 1555 2.47 LINK CA CA B 301 O HOH B 469 1555 1555 2.38 LINK CA CA B 301 O HOH B 496 1555 1555 2.29 LINK CA CA B 302 O HOH B 433 1555 1555 2.34 LINK CA CA B 302 O HOH B 498 1555 1555 2.27 CISPEP 1 ALA A 77 ASP A 78 0 10.89 CISPEP 2 THR A 210 GLY A 211 0 -8.49 CISPEP 3 ALA B 77 ASP B 78 0 7.08 CISPEP 4 THR B 210 GLY B 211 0 -7.04 CRYST1 45.890 58.949 187.305 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005339 0.00000 CONECT 949 3681 CONECT 967 3682 CONECT 968 3681 3682 CONECT 979 3682 CONECT 1003 3682 CONECT 1051 3681 CONECT 1052 3682 CONECT 2778 3714 CONECT 2796 3715 CONECT 2797 3714 3715 CONECT 2808 3715 CONECT 2832 3715 CONECT 2880 3714 CONECT 2881 3715 CONECT 3681 949 968 1051 3757 CONECT 3681 3787 CONECT 3682 967 968 979 1003 CONECT 3682 1052 3792 3794 CONECT 3683 3684 3692 3695 CONECT 3684 3683 3685 3691 CONECT 3685 3684 3686 3693 CONECT 3686 3685 3687 3694 CONECT 3687 3686 3688 3695 CONECT 3688 3687 3696 CONECT 3689 3690 3691 3697 CONECT 3690 3689 CONECT 3691 3684 3689 CONECT 3692 3683 CONECT 3693 3685 CONECT 3694 3686 CONECT 3695 3683 3687 CONECT 3696 3688 CONECT 3697 3689 CONECT 3698 3699 3700 CONECT 3699 3698 CONECT 3700 3698 3701 CONECT 3701 3700 CONECT 3702 3703 3704 CONECT 3703 3702 CONECT 3704 3702 3705 CONECT 3705 3704 CONECT 3706 3707 3708 CONECT 3707 3706 CONECT 3708 3706 3709 CONECT 3709 3708 CONECT 3710 3711 3712 CONECT 3711 3710 CONECT 3712 3710 3713 CONECT 3713 3712 CONECT 3714 2778 2797 2880 3990 CONECT 3714 4017 CONECT 3715 2796 2797 2808 2832 CONECT 3715 2881 3954 4019 CONECT 3716 3717 3725 CONECT 3717 3716 3718 3719 CONECT 3718 3717 CONECT 3719 3717 3720 3721 CONECT 3720 3719 3728 CONECT 3721 3719 3722 3723 CONECT 3722 3721 CONECT 3723 3721 3724 3725 CONECT 3724 3723 CONECT 3725 3716 3723 3726 CONECT 3726 3725 3727 CONECT 3727 3726 CONECT 3728 3720 3729 3730 CONECT 3729 3728 CONECT 3730 3728 CONECT 3731 3732 3733 CONECT 3732 3731 CONECT 3733 3731 3734 CONECT 3734 3733 CONECT 3735 3736 3737 CONECT 3736 3735 CONECT 3737 3735 3738 CONECT 3738 3737 CONECT 3757 3681 CONECT 3787 3681 CONECT 3792 3682 CONECT 3794 3682 CONECT 3954 3715 CONECT 3990 3714 CONECT 4017 3714 CONECT 4019 3715 MASTER 433 0 12 10 42 0 0 6 4039 2 84 38 END