HEADER SUGAR BINDING PROTEIN 30-AUG-16 5T52 TITLE LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BFL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAUHINIA FORFICATA; SOURCE 3 ORGANISM_COMMON: BRAZILIAN ORCHID-TREE; SOURCE 4 ORGANISM_TAXID: 413686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEGUME LECTIN, CONCANAVALIN A, GALNAC-SPECIFIC, LIGAND-FREE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 6 06-MAR-24 5T52 1 HETSYN REVDAT 5 29-JUL-20 5T52 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 01-NOV-17 5T52 1 REMARK REVDAT 3 15-FEB-17 5T52 1 JRNL REVDAT 2 08-FEB-17 5T52 1 JRNL REVDAT 1 28-DEC-16 5T52 0 JRNL AUTH J.LUBKOWSKI,S.V.DURBIN,M.C.SILVA,D.FARNSWORTH, JRNL AUTH 2 J.C.GILDERSLEEVE,M.L.OLIVA,A.WLODAWER JRNL TITL STRUCTURAL ANALYSIS AND UNIQUE MOLECULAR RECOGNITION JRNL TITL 2 PROPERTIES OF A BAUHINIA FORFICATA LECTIN THAT INHIBITS JRNL TITL 3 CANCER CELL GROWTH. JRNL REF FEBS J. V. 284 429 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27973758 JRNL DOI 10.1111/FEBS.13989 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 53241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3836 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3462 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5236 ; 2.102 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7951 ; 1.581 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 7.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;34.572 ;23.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;13.018 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4399 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1838 ; 1.045 ; 0.841 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1837 ; 1.022 ; 0.839 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2296 ; 1.554 ; 1.256 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 229 REMARK 3 RESIDUE RANGE : A 301 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7260 23.0220 38.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0051 REMARK 3 T33: 0.0166 T12: 0.0051 REMARK 3 T13: -0.0118 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.4294 L22: 0.1357 REMARK 3 L33: 0.4565 L12: 0.0192 REMARK 3 L13: 0.1742 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.0068 S13: -0.0139 REMARK 3 S21: 0.0053 S22: -0.0107 S23: 0.0021 REMARK 3 S31: -0.0112 S32: -0.0230 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 229 REMARK 3 RESIDUE RANGE : B 301 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7220 22.2790 11.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0448 REMARK 3 T33: 0.0057 T12: 0.0102 REMARK 3 T13: -0.0082 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3708 L22: 0.2998 REMARK 3 L33: 0.5986 L12: -0.0265 REMARK 3 L13: 0.1295 L23: 0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0387 S13: 0.0080 REMARK 3 S21: 0.0089 S22: -0.0168 S23: -0.0061 REMARK 3 S31: -0.0294 S32: -0.0419 S33: 0.0342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5T52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 - 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BLOCKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 5-8 MG/ML IN REMARK 280 0.05 M HEPES BUFFER (PH 7.5) AND 0.15 M NACL, PRECIPITANT: 12% REMARK 280 (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (PH 7.5), REMARK 280 DROPLETS RATIO: 1:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.65250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.47450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.65250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.47450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER AS DETERMINED BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 ARG A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 LEU B 230 REMARK 465 LEU B 231 REMARK 465 ARG B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 ALA B 235 REMARK 465 ARG B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 15 O HOH B 401 2.08 REMARK 500 O HOH A 455 O HOH A 460 2.08 REMARK 500 NH2 ARG A 146 O HOH A 401 2.15 REMARK 500 NH2 ARG B 25 O HOH B 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU B 14 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 193 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 -159.95 -103.26 REMARK 500 GLN A 212 148.43 -175.37 REMARK 500 LYS B 92 -151.83 -103.69 REMARK 500 TYR B 94 -175.92 -69.34 REMARK 500 GLN B 212 143.90 -175.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 ASP A 120 OD2 94.4 REMARK 620 3 GLU A 129 OE1 165.3 82.1 REMARK 620 4 HOH A 419 O 80.8 95.1 85.2 REMARK 620 5 HOH A 449 O 89.1 169.6 96.8 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 54.3 REMARK 620 3 TRP A 122 O 73.7 115.6 REMARK 620 4 ASN A 124 OD1 152.1 152.9 87.7 REMARK 620 5 GLU A 129 OE2 109.0 84.4 79.0 86.9 REMARK 620 6 HOH A 454 O 115.0 75.1 169.2 81.9 102.9 REMARK 620 7 HOH A 456 O 73.6 106.8 89.6 86.0 166.8 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 OE2 REMARK 620 2 ASP B 120 OD2 91.3 REMARK 620 3 GLU B 129 OE1 166.0 84.2 REMARK 620 4 HOH B 469 O 82.2 97.0 85.2 REMARK 620 5 HOH B 496 O 88.4 164.3 99.5 98.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 ASP B 120 OD2 52.6 REMARK 620 3 TRP B 122 O 76.8 117.2 REMARK 620 4 ASN B 124 OD1 152.6 153.6 85.9 REMARK 620 5 GLU B 129 OE2 108.0 84.4 78.1 88.7 REMARK 620 6 HOH B 433 O 74.5 105.6 91.4 84.9 168.2 REMARK 620 7 HOH B 498 O 112.1 72.3 170.3 84.3 101.9 87.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T50 RELATED DB: PDB REMARK 900 RELATED ID: 5T54 RELATED DB: PDB REMARK 900 RELATED ID: 5T55 RELATED DB: PDB REMARK 900 RELATED ID: 5T5J RELATED DB: PDB REMARK 900 RELATED ID: 5T5L RELATED DB: PDB REMARK 900 RELATED ID: 5T5O RELATED DB: PDB REMARK 900 RELATED ID: 5T5P RELATED DB: PDB DBREF 5T52 A 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T52 B 1 233 UNP P86993 LECT_BAUFO 1 233 SEQADV 5T52 GLY A 234 UNP P86993 EXPRESSION TAG SEQADV 5T52 ALA A 235 UNP P86993 EXPRESSION TAG SEQADV 5T52 ARG A 236 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 237 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 238 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 239 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 240 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 241 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS A 242 UNP P86993 EXPRESSION TAG SEQADV 5T52 GLY B 234 UNP P86993 EXPRESSION TAG SEQADV 5T52 ALA B 235 UNP P86993 EXPRESSION TAG SEQADV 5T52 ARG B 236 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 237 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 238 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 239 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 240 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 241 UNP P86993 EXPRESSION TAG SEQADV 5T52 HIS B 242 UNP P86993 EXPRESSION TAG SEQRES 1 A 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 A 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 A 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 A 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 A 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 A 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 A 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 A 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 A 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 A 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 A 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 A 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 A 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 A 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 A 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 A 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 A 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 A 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 A 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 B 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 B 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 B 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 B 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 B 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 B 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 B 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 B 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 B 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 B 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 B 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 B 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 B 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 B 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 B 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 B 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 B 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 B 242 ALA ARG HIS HIS HIS HIS HIS HIS HET CA A 301 1 HET CA A 302 1 HET NGA A 303 15 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CA B 301 1 HET CA B 302 1 HET A2G B 303 15 HET EDO B 304 4 HET EDO B 305 4 HETNAM CA CALCIUM ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN EDO ETHYLENE GLYCOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 CA 4(CA 2+) FORMUL 5 NGA C8 H15 N O6 FORMUL 6 EDO 6(C2 H6 O2) FORMUL 12 A2G C8 H15 N O6 FORMUL 15 HOH *359(H2 O) HELIX 1 AA1 TYR A 94 LEU A 98 5 5 HELIX 2 AA2 GLU A 102 ALA A 106 5 5 HELIX 3 AA3 ASN A 108 ASN A 112 5 5 HELIX 4 AA4 GLN A 151 PHE A 156 1 6 HELIX 5 AA5 ASP A 193 PHE A 198 1 6 HELIX 6 AA6 TYR B 94 LEU B 98 5 5 HELIX 7 AA7 GLU B 102 ALA B 106 5 5 HELIX 8 AA8 ASN B 108 ASN B 112 5 5 HELIX 9 AA9 GLN B 151 PHE B 156 1 6 HELIX 10 AB1 ASP B 193 PHE B 198 1 6 SHEET 1 AA1 4 LEU A 3 TYR A 7 0 SHEET 2 AA1 4 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA1 4 THR A 28 GLN A 30 -1 N LEU A 29 O ILE A 218 SHEET 4 AA1 4 SER A 23 ARG A 25 -1 N SER A 23 O GLN A 30 SHEET 1 AA2 6 LEU A 3 TYR A 7 0 SHEET 2 AA2 6 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA2 6 THR A 59 THR A 71 -1 N ARG A 70 O THR A 215 SHEET 4 AA2 6 ALA A 161 ASP A 168 -1 O VAL A 165 N THR A 63 SHEET 5 AA2 6 ILE A 173 THR A 179 -1 O THR A 179 N THR A 162 SHEET 6 AA2 6 ASN A 185 VAL A 191 -1 O LEU A 188 N ALA A 176 SHEET 1 AA3 4 ILE A 16 GLY A 20 0 SHEET 2 AA3 4 ARG A 44 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA3 4 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA3 4 PHE A 54 GLN A 55 -1 N PHE A 54 O VAL A 202 SHEET 1 AA4 7 ILE A 16 GLY A 20 0 SHEET 2 AA4 7 ARG A 44 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA4 7 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA4 7 ALA A 77 ALA A 85 -1 N PHE A 83 O GLY A 205 SHEET 5 AA4 7 VAL A 115 ASP A 120 -1 O PHE A 119 N PHE A 80 SHEET 6 AA4 7 HIS A 134 VAL A 139 -1 O ASP A 138 N ALA A 116 SHEET 7 AA4 7 ARG A 146 ARG A 149 -1 O ARG A 146 N ILE A 137 SHEET 1 AA5 4 LEU B 3 TYR B 7 0 SHEET 2 AA5 4 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA5 4 THR B 28 GLN B 30 -1 N LEU B 29 O ILE B 218 SHEET 4 AA5 4 SER B 23 ARG B 25 -1 N SER B 23 O GLN B 30 SHEET 1 AA6 6 LEU B 3 TYR B 7 0 SHEET 2 AA6 6 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA6 6 THR B 59 THR B 71 -1 N VAL B 68 O TYR B 217 SHEET 4 AA6 6 ALA B 161 ASP B 168 -1 O VAL B 165 N THR B 63 SHEET 5 AA6 6 ILE B 173 THR B 179 -1 O THR B 175 N GLY B 166 SHEET 6 AA6 6 ASN B 185 VAL B 191 -1 O LEU B 188 N ALA B 176 SHEET 1 AA7 4 ILE B 16 GLY B 20 0 SHEET 2 AA7 4 ALA B 45 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA7 4 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA7 4 PHE B 54 GLN B 55 -1 N PHE B 54 O VAL B 202 SHEET 1 AA8 7 ILE B 16 GLY B 20 0 SHEET 2 AA8 7 ALA B 45 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA8 7 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA8 7 ALA B 77 ALA B 85 -1 N PHE B 83 O GLY B 205 SHEET 5 AA8 7 VAL B 115 ASP B 120 -1 O PHE B 119 N PHE B 80 SHEET 6 AA8 7 HIS B 134 VAL B 139 -1 O ASP B 138 N ALA B 116 SHEET 7 AA8 7 ARG B 146 ARG B 149 -1 O ARG B 146 N ILE B 137 LINK OE2 GLU A 118 CA CA A 301 1555 1555 2.28 LINK OD2 ASP A 120 CA CA A 301 1555 1555 2.23 LINK OD1 ASP A 120 CA CA A 302 1555 1555 2.44 LINK OD2 ASP A 120 CA CA A 302 1555 1555 2.38 LINK O TRP A 122 CA CA A 302 1555 1555 2.38 LINK OD1 ASN A 124 CA CA A 302 1555 1555 2.31 LINK OE1 GLU A 129 CA CA A 301 1555 1555 2.34 LINK OE2 GLU A 129 CA CA A 302 1555 1555 2.45 LINK CA CA A 301 O HOH A 419 1555 1555 2.40 LINK CA CA A 301 O HOH A 449 1555 1555 2.22 LINK CA CA A 302 O HOH A 454 1555 1555 2.40 LINK CA CA A 302 O HOH A 456 1555 1555 2.43 LINK OE2 GLU B 118 CA CA B 301 1555 1555 2.29 LINK OD2 ASP B 120 CA CA B 301 1555 1555 2.26 LINK OD1 ASP B 120 CA CA B 302 1555 1555 2.56 LINK OD2 ASP B 120 CA CA B 302 1555 1555 2.49 LINK O TRP B 122 CA CA B 302 1555 1555 2.25 LINK OD1 ASN B 124 CA CA B 302 1555 1555 2.28 LINK OE1 GLU B 129 CA CA B 301 1555 1555 2.34 LINK OE2 GLU B 129 CA CA B 302 1555 1555 2.47 LINK CA CA B 301 O HOH B 469 1555 1555 2.38 LINK CA CA B 301 O HOH B 496 1555 1555 2.29 LINK CA CA B 302 O HOH B 433 1555 1555 2.34 LINK CA CA B 302 O HOH B 498 1555 1555 2.27 CISPEP 1 ALA A 77 ASP A 78 0 10.89 CISPEP 2 THR A 210 GLY A 211 0 -8.49 CISPEP 3 ALA B 77 ASP B 78 0 7.08 CISPEP 4 THR B 210 GLY B 211 0 -7.04 CRYST1 45.890 58.949 187.305 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005339 0.00000