HEADER SUGAR BINDING PROTEIN 31-AUG-16 5T5J TITLE LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BFL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TN ANTIGEN ACA-SER-SER-VAL-GLY; COMPND 8 CHAIN: a, b; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAUHINIA FORFICATA; SOURCE 3 ORGANISM_COMMON: BRAZILIAN ORCHID-TREE; SOURCE 4 ORGANISM_TAXID: 413686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS LEGUME LECTIN, CONCANAVALIN A, GALNAC-SPECIFIC, LIGAND-FREE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 6 15-NOV-23 5T5J 1 HETSYN LINK ATOM REVDAT 5 29-JUL-20 5T5J 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 01-NOV-17 5T5J 1 REMARK REVDAT 3 15-FEB-17 5T5J 1 JRNL REVDAT 2 08-FEB-17 5T5J 1 JRNL REVDAT 1 28-DEC-16 5T5J 0 JRNL AUTH J.LUBKOWSKI,S.V.DURBIN,M.C.SILVA,D.FARNSWORTH, JRNL AUTH 2 J.C.GILDERSLEEVE,M.L.OLIVA,A.WLODAWER JRNL TITL STRUCTURAL ANALYSIS AND UNIQUE MOLECULAR RECOGNITION JRNL TITL 2 PROPERTIES OF A BAUHINIA FORFICATA LECTIN THAT INHIBITS JRNL TITL 3 CANCER CELL GROWTH. JRNL REF FEBS J. V. 284 429 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27973758 JRNL DOI 10.1111/FEBS.13989 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 93776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.106 REMARK 3 R VALUE (WORKING SET) : 0.105 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1370 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.1960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3899 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3561 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5300 ; 2.062 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8184 ; 2.135 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 7.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;35.117 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;13.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.310 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4412 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 985 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 1.951 ; 1.398 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 1.937 ; 1.396 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2313 ; 2.158 ; 2.103 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7459 ; 5.828 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 174 ;37.417 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7681 ;14.413 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5T5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 5-8 MG/ML IN REMARK 280 0.05 M HEPES BUFFER (PH 7.5) AND 0.15 M NACL. PRECIPITANT: 12% REMARK 280 (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (PH 7.5) REMARK 280 .PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (PH 7.5) REMARK 280 AND 0.15 M NACL. PRECIPITANT: 12% (W/W) PEG8000, 8% (W/V) REMARK 280 ETHYLENE GLYCOL, 0.1 M HEPES (PH 7.5). DROPLETS RATIO: 1:1 REMARK 280 DROPLETS RATIO: 1:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.07950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER AS DETERMINED BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, b REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 ARG A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 LEU B 230 REMARK 465 LEU B 231 REMARK 465 ARG B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 ALA B 235 REMARK 465 ARG B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 ACA b 100 REMARK 465 GLY b 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 108 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 25 O HOH A 402 1.88 REMARK 500 O HOH A 527 O HOH A 609 1.89 REMARK 500 OE1 GLN A 43 O HOH A 403 1.91 REMARK 500 CB ARG B 70 O HOH B 587 2.04 REMARK 500 O HOH A 507 O HOH A 603 2.09 REMARK 500 CD ARG B 146 O HOH B 404 2.12 REMARK 500 O HOH B 609 O HOH B 612 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 182 O HOH A 411 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 4 CB SER B 4 OG -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 146 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 -155.33 -100.31 REMARK 500 ARG A 131 45.88 -85.94 REMARK 500 LYS B 92 -154.80 -98.33 REMARK 500 TYR B 94 -179.55 -66.16 REMARK 500 ARG B 131 39.13 -87.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 ASP A 120 OD2 93.1 REMARK 620 3 GLU A 129 OE1 170.0 89.3 REMARK 620 4 HOH A 447 O 83.9 93.9 86.3 REMARK 620 5 HOH A 479 O 88.6 172.0 90.3 94.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 53.4 REMARK 620 3 TRP A 122 O 74.8 114.0 REMARK 620 4 ASN A 124 OD1 150.7 155.0 87.2 REMARK 620 5 GLU A 129 OE2 110.7 83.2 79.7 88.0 REMARK 620 6 HOH A 473 O 71.9 106.9 89.7 85.3 167.8 REMARK 620 7 HOH A 474 O 113.5 75.0 170.8 83.6 100.1 89.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 OE2 REMARK 620 2 ASP B 120 OD2 92.5 REMARK 620 3 GLU B 129 OE1 169.4 88.6 REMARK 620 4 HOH B 431 O 87.6 172.2 92.7 REMARK 620 5 HOH B 435 O 83.4 94.4 86.0 93.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 ASP B 120 OD2 52.6 REMARK 620 3 TRP B 122 O 75.7 114.8 REMARK 620 4 ASN B 124 OD1 151.3 155.2 86.4 REMARK 620 5 GLU B 129 OE2 111.2 84.1 80.3 87.1 REMARK 620 6 HOH B 443 O 112.1 73.7 171.4 85.0 99.4 REMARK 620 7 HOH B 470 O 73.0 106.6 90.4 85.0 168.2 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T50 RELATED DB: PDB REMARK 900 RELATED ID: 5T52 RELATED DB: PDB REMARK 900 RELATED ID: 5T55 RELATED DB: PDB REMARK 900 RELATED ID: 5T5L RELATED DB: PDB REMARK 900 RELATED ID: 5T5O RELATED DB: PDB REMARK 900 RELATED ID: 5T54 RELATED DB: PDB REMARK 900 RELATED ID: 5T5P RELATED DB: PDB DBREF 5T5J A 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T5J B 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T5J a 100 104 PDB 5T5J 5T5J 100 104 DBREF 5T5J b 100 104 PDB 5T5J 5T5J 100 104 SEQADV 5T5J GLY A 234 UNP P86993 EXPRESSION TAG SEQADV 5T5J ALA A 235 UNP P86993 EXPRESSION TAG SEQADV 5T5J ARG A 236 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 237 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 238 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 239 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 240 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 241 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS A 242 UNP P86993 EXPRESSION TAG SEQADV 5T5J GLY B 234 UNP P86993 EXPRESSION TAG SEQADV 5T5J ALA B 235 UNP P86993 EXPRESSION TAG SEQADV 5T5J ARG B 236 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 237 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 238 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 239 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 240 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 241 UNP P86993 EXPRESSION TAG SEQADV 5T5J HIS B 242 UNP P86993 EXPRESSION TAG SEQRES 1 A 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 A 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 A 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 A 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 A 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 A 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 A 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 A 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 A 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 A 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 A 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 A 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 A 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 A 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 A 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 A 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 A 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 A 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 A 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 B 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 B 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 B 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 B 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 B 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 B 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 B 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 B 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 B 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 B 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 B 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 B 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 B 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 B 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 B 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 B 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 B 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 B 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 a 5 ACA SER SER VAL GLY SEQRES 1 b 5 ACA SER SER VAL GLY HET ACA a 100 8 HET CA A 301 1 HET CA A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CA B 301 1 HET CA B 302 1 HET EDO B 303 4 HET EDO B 304 4 HET A2G a 201 14 HET A2G b 201 14 HETNAM ACA 6-AMINOHEXANOIC ACID HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN ACA AMINOCAPROIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 ACA C6 H13 N O2 FORMUL 5 CA 4(CA 2+) FORMUL 7 EDO 7(C2 H6 O2) FORMUL 16 A2G 2(C8 H15 N O6) FORMUL 18 HOH *487(H2 O) HELIX 1 AA1 TYR A 94 LEU A 98 5 5 HELIX 2 AA2 GLU A 102 ALA A 106 5 5 HELIX 3 AA3 ASN A 108 ASN A 112 5 5 HELIX 4 AA4 GLN A 151 PHE A 156 1 6 HELIX 5 AA5 ASP A 193 PHE A 198 1 6 HELIX 6 AA6 TYR B 94 LEU B 98 5 5 HELIX 7 AA7 GLU B 102 ALA B 106 5 5 HELIX 8 AA8 ASN B 108 ASN B 112 5 5 HELIX 9 AA9 GLN B 151 PHE B 156 1 6 HELIX 10 AB1 ASP B 193 PHE B 198 1 6 SHEET 1 AA1 4 LEU A 3 TYR A 7 0 SHEET 2 AA1 4 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA1 4 LEU A 29 GLN A 30 -1 N LEU A 29 O ILE A 218 SHEET 4 AA1 4 SER A 23 PRO A 24 -1 N SER A 23 O GLN A 30 SHEET 1 AA2 6 LEU A 3 TYR A 7 0 SHEET 2 AA2 6 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA2 6 THR A 59 THR A 71 -1 N ARG A 70 O THR A 215 SHEET 4 AA2 6 ALA A 161 ASP A 168 -1 O VAL A 165 N THR A 63 SHEET 5 AA2 6 ILE A 173 THR A 179 -1 O THR A 179 N THR A 162 SHEET 6 AA2 6 ASN A 185 VAL A 191 -1 O LEU A 188 N ALA A 176 SHEET 1 AA3 4 ILE A 16 GLY A 20 0 SHEET 2 AA3 4 ALA A 45 TYR A 50 -1 O HIS A 47 N GLN A 19 SHEET 3 AA3 4 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA3 4 PHE A 54 GLN A 55 -1 N PHE A 54 O VAL A 202 SHEET 1 AA4 7 ILE A 16 GLY A 20 0 SHEET 2 AA4 7 ALA A 45 TYR A 50 -1 O HIS A 47 N GLN A 19 SHEET 3 AA4 7 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA4 7 ALA A 77 ALA A 85 -1 N PHE A 83 O GLY A 205 SHEET 5 AA4 7 VAL A 115 ASP A 120 -1 O PHE A 119 N PHE A 80 SHEET 6 AA4 7 HIS A 134 VAL A 139 -1 O HIS A 134 N ASP A 120 SHEET 7 AA4 7 ARG A 146 ARG A 149 -1 O ARG A 146 N ILE A 137 SHEET 1 AA5 4 LEU B 3 TYR B 7 0 SHEET 2 AA5 4 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA5 4 THR B 28 GLN B 30 -1 N LEU B 29 O ILE B 218 SHEET 4 AA5 4 SER B 23 ARG B 25 -1 N SER B 23 O GLN B 30 SHEET 1 AA6 6 LEU B 3 TYR B 7 0 SHEET 2 AA6 6 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA6 6 THR B 59 THR B 71 -1 N ARG B 70 O THR B 215 SHEET 4 AA6 6 ALA B 161 ASP B 168 -1 O VAL B 165 N THR B 63 SHEET 5 AA6 6 ILE B 173 THR B 179 -1 O THR B 179 N THR B 162 SHEET 6 AA6 6 ASN B 185 VAL B 191 -1 O LEU B 188 N ALA B 176 SHEET 1 AA7 4 ILE B 16 GLY B 20 0 SHEET 2 AA7 4 ARG B 44 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA7 4 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA7 4 PHE B 54 GLN B 55 -1 N PHE B 54 O VAL B 202 SHEET 1 AA8 7 ILE B 16 GLY B 20 0 SHEET 2 AA8 7 ARG B 44 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA8 7 ASP B 201 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA8 7 ALA B 77 ALA B 85 -1 N PHE B 83 O GLY B 205 SHEET 5 AA8 7 VAL B 115 ASP B 120 -1 O PHE B 119 N PHE B 80 SHEET 6 AA8 7 HIS B 134 VAL B 139 -1 O HIS B 134 N ASP B 120 SHEET 7 AA8 7 ARG B 146 ARG B 149 -1 O THR B 148 N ILE B 135 LINK C ACA a 100 N SER a 101 1555 1555 1.38 LINK OG SER a 102 C1 A2G a 201 1555 1555 1.52 LINK OG SER b 102 C1 A2G b 201 1555 1555 1.43 LINK OE2 GLU A 118 CA CA A 301 1555 1555 2.24 LINK OD2 ASP A 120 CA CA A 301 1555 1555 2.17 LINK OD1 ASP A 120 CA CA A 302 1555 1555 2.50 LINK OD2 ASP A 120 CA CA A 302 1555 1555 2.44 LINK O TRP A 122 CA CA A 302 1555 1555 2.30 LINK OD1 ASN A 124 CA CA A 302 1555 1555 2.34 LINK OE1 GLU A 129 CA CA A 301 1555 1555 2.16 LINK OE2 GLU A 129 CA CA A 302 1555 1555 2.39 LINK CA CA A 301 O HOH A 447 1555 1555 2.28 LINK CA CA A 301 O HOH A 479 1555 1555 2.17 LINK CA CA A 302 O HOH A 473 1555 1555 2.40 LINK CA CA A 302 O HOH A 474 1555 1555 2.40 LINK OE2 GLU B 118 CA CA B 301 1555 1555 2.20 LINK OD2 ASP B 120 CA CA B 301 1555 1555 2.19 LINK OD1 ASP B 120 CA CA B 302 1555 1555 2.45 LINK OD2 ASP B 120 CA CA B 302 1555 1555 2.45 LINK O TRP B 122 CA CA B 302 1555 1555 2.33 LINK OD1 ASN B 124 CA CA B 302 1555 1555 2.36 LINK OE1 GLU B 129 CA CA B 301 1555 1555 2.15 LINK OE2 GLU B 129 CA CA B 302 1555 1555 2.44 LINK CA CA B 301 O HOH B 431 1555 1555 2.19 LINK CA CA B 301 O HOH B 435 1555 1555 2.25 LINK CA CA B 302 O HOH B 443 1555 1555 2.44 LINK CA CA B 302 O HOH B 470 1555 1555 2.34 CISPEP 1 ALA A 77 ASP A 78 0 7.86 CISPEP 2 THR A 210 GLY A 211 0 -12.53 CISPEP 3 ALA B 77 ASP B 78 0 8.31 CISPEP 4 THR B 210 GLY B 211 0 -7.05 CRYST1 54.378 46.159 92.107 90.00 92.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018390 0.000000 0.000823 0.00000 SCALE2 0.000000 0.021664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010868 0.00000