HEADER SUGAR BINDING PROTEIN 31-AUG-16 5T5L TITLE LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BFL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TN ANTIGEN ACE-SER-SER-VAL-GLY; COMPND 8 CHAIN: a, b; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAUHINIA FORFICATA; SOURCE 3 ORGANISM_COMMON: BRAZILIAN ORCHID-TREE; SOURCE 4 ORGANISM_TAXID: 413686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS LEGUME LECTIN, CONCANAVALIN A, GALNAC-SPECIFIC, LIGAND-FREE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 6 30-OCT-24 5T5L 1 HETSYN REVDAT 5 29-JUL-20 5T5L 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 01-NOV-17 5T5L 1 REMARK REVDAT 3 15-FEB-17 5T5L 1 JRNL REVDAT 2 08-FEB-17 5T5L 1 JRNL REVDAT 1 28-DEC-16 5T5L 0 JRNL AUTH J.LUBKOWSKI,S.V.DURBIN,M.C.SILVA,D.FARNSWORTH, JRNL AUTH 2 J.C.GILDERSLEEVE,M.L.OLIVA,A.WLODAWER JRNL TITL STRUCTURAL ANALYSIS AND UNIQUE MOLECULAR RECOGNITION JRNL TITL 2 PROPERTIES OF A BAUHINIA FORFICATA LECTIN THAT INHIBITS JRNL TITL 3 CANCER CELL GROWTH. JRNL REF FEBS J. V. 284 429 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27973758 JRNL DOI 10.1111/FEBS.13989 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 139485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3945 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3574 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5365 ; 1.985 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8221 ; 3.127 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 7.450 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;34.497 ;23.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;13.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4501 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 997 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1876 ; 2.498 ; 1.579 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1875 ; 2.422 ; 1.577 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2341 ; 2.988 ; 2.370 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7519 ; 6.022 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 128 ;43.694 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7783 ;14.709 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5T5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 5-8 MG/ML IN REMARK 280 0.05 M HEPES BUFFER (PH 7.5) AND 0.15 M NACL. PRECIPITANT: 25% REMARK 280 (W/W) PEG1500, 0.1 M NACL, 0.1 M BIS-TRIS PROPANE (PH 9.0). REMARK 280 DROPLETS RATIO: 1:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.43250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.39150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.25100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.39150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.43250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.25100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER AS DETERMINED BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, b REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 ARG A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 LEU B 230 REMARK 465 LEU B 231 REMARK 465 ARG B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 ALA B 235 REMARK 465 ARG B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 GLY a 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 104 O HOH B 402 1.94 REMARK 500 NH1 ARG B 70 O HOH B 403 1.94 REMARK 500 O HOH B 510 O HOH B 536 1.97 REMARK 500 O HOH A 595 O HOH A 600 2.05 REMARK 500 ND2 ASN A 74 O HOH A 405 2.06 REMARK 500 O HOH B 510 O HOH B 629 2.07 REMARK 500 O HOH A 449 O HOH A 460 2.14 REMARK 500 NH2 ARG B 70 O HOH B 405 2.15 REMARK 500 O HOH A 503 O HOH A 623 2.17 REMARK 500 O HOH B 428 O HOH B 622 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 553 O HOH B 573 3555 1.94 REMARK 500 O HOH A 584 O HOH A 616 4456 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 0.071 REMARK 500 GLU B 14 CD GLU B 14 OE1 0.146 REMARK 500 GLU B 14 CD GLU B 14 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 14 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 VAL A 49 CA - CB - CG1 ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU A 188 CB - CG - CD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 -152.61 -103.25 REMARK 500 LYS B 92 -156.72 -99.16 REMARK 500 TYR B 94 -174.74 -68.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 131 10.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 ASP A 120 OD2 93.4 REMARK 620 3 GLU A 129 OE1 168.2 89.3 REMARK 620 4 GLU A 129 OE2 169.0 89.5 0.9 REMARK 620 5 HOH A 427 O 83.3 94.5 85.1 85.9 REMARK 620 6 HOH A 448 O 86.8 170.9 92.4 92.0 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 53.2 REMARK 620 3 TRP A 122 O 75.0 115.0 REMARK 620 4 ASN A 124 OD1 150.5 155.3 86.2 REMARK 620 5 GLU A 129 OE1 111.3 84.2 80.7 87.2 REMARK 620 6 GLU A 129 OE2 111.6 84.4 80.8 86.9 0.3 REMARK 620 7 HOH A 453 O 72.7 106.7 89.4 84.9 167.7 167.6 REMARK 620 8 HOH A 486 O 112.9 73.9 171.1 84.9 99.6 99.4 89.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 OE2 REMARK 620 2 ASP B 120 OD2 93.5 REMARK 620 3 GLU B 129 OE1 169.5 89.4 REMARK 620 4 GLU B 129 OE1 169.9 88.8 0.7 REMARK 620 5 HOH B 427 O 84.2 93.3 85.6 85.9 REMARK 620 6 HOH B 447 O 85.9 172.1 92.6 93.1 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 ASP B 120 OD2 53.1 REMARK 620 3 TRP B 122 O 75.1 116.2 REMARK 620 4 ASN B 124 OD1 151.6 154.5 85.8 REMARK 620 5 GLU B 129 OE2 110.8 84.3 81.8 86.5 REMARK 620 6 GLU B 129 OE2 111.3 84.5 82.2 86.1 0.6 REMARK 620 7 HOH B 457 O 73.0 106.3 88.5 85.9 168.1 168.2 REMARK 620 8 HOH B 482 O 114.1 74.4 169.3 83.7 99.1 98.6 89.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T50 RELATED DB: PDB REMARK 900 RELATED ID: 5T52 RELATED DB: PDB REMARK 900 RELATED ID: 5T55 RELATED DB: PDB REMARK 900 RELATED ID: 5T5J RELATED DB: PDB REMARK 900 RELATED ID: 5T5O RELATED DB: PDB REMARK 900 RELATED ID: 5T54 RELATED DB: PDB REMARK 900 RELATED ID: 5T5P RELATED DB: PDB DBREF 5T5L A 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T5L B 1 233 UNP P86993 LECT_BAUFO 1 233 DBREF 5T5L a 100 104 PDB 5T5L 5T5L 100 104 DBREF 5T5L b 100 104 PDB 5T5L 5T5L 100 104 SEQADV 5T5L GLY A 234 UNP P86993 EXPRESSION TAG SEQADV 5T5L ALA A 235 UNP P86993 EXPRESSION TAG SEQADV 5T5L ARG A 236 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 237 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 238 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 239 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 240 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 241 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS A 242 UNP P86993 EXPRESSION TAG SEQADV 5T5L GLY B 234 UNP P86993 EXPRESSION TAG SEQADV 5T5L ALA B 235 UNP P86993 EXPRESSION TAG SEQADV 5T5L ARG B 236 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 237 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 238 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 239 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 240 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 241 UNP P86993 EXPRESSION TAG SEQADV 5T5L HIS B 242 UNP P86993 EXPRESSION TAG SEQRES 1 A 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 A 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 A 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 A 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 A 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 A 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 A 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 A 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 A 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 A 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 A 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 A 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 A 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 A 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 A 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 A 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 A 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 A 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 A 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 242 SER GLU LEU SER PHE ASN TYR PRO ASN PHE GLN SER VAL SEQRES 2 B 242 GLU ASP ILE THR PHE GLN GLY GLY ALA SER PRO ARG ASN SEQRES 3 B 242 GLU THR LEU GLN LEU THR PRO THR ASP SER ASN GLY ILE SEQRES 4 B 242 PRO ILE ARG GLN ARG ALA GLY HIS ALA VAL TYR SER GLN SEQRES 5 B 242 PRO PHE GLN LEU ARG ASP THR SER PHE TYR THR THR PHE SEQRES 6 B 242 THR PHE VAL ILE ARG THR THR SER ASN SER PRO ALA ASP SEQRES 7 B 242 GLY PHE ALA ILE PHE ILE ALA PRO PRO ASP PHE PRO VAL SEQRES 8 B 242 LYS ARG TYR GLY GLY TYR LEU GLY LEU PHE GLU PRO ASN SEQRES 9 B 242 THR ALA THR ASN THR SER ALA ASN LYS VAL VAL ALA VAL SEQRES 10 B 242 GLU PHE ASP THR TRP VAL ASN THR GLU TRP LYS GLU PRO SEQRES 11 B 242 ARG TYR ARG HIS ILE GLY ILE ASP VAL ASN SER ILE VAL SEQRES 12 B 242 SER VAL ARG VAL THR ARG TRP GLN ASP LYS ASP VAL PHE SEQRES 13 B 242 SER ARG SER ILE ALA THR ALA HIS VAL GLY TYR ASP GLY SEQRES 14 B 242 ILE SER LYS ILE LEU THR ALA PHE VAL THR TYR PRO ASP SEQRES 15 B 242 GLY GLY ASN TYR VAL LEU SER HIS VAL VAL ASP LEU ALA SEQRES 16 B 242 GLU ILE PHE PRO GLY ASP VAL ARG ILE GLY PHE SER GLY SEQRES 17 B 242 ALA THR GLY GLN TYR GLU THR GLN TYR ILE HIS SER TRP SEQRES 18 B 242 SER PHE SER SER THR SER THR ASN LEU LEU ARG ASP GLY SEQRES 19 B 242 ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 a 5 ACE SER SER VAL GLY SEQRES 1 b 5 ACE SER SER VAL GLY HET ACE a 100 3 HET ACE b 100 3 HET CA A 301 1 HET CA A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CA B 301 1 HET CA B 302 1 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET GOL B 306 6 HET CL B 307 1 HET EDO B 308 4 HET EDO B 309 4 HET A2G a 201 14 HET A2G b 201 14 HETNAM ACE ACETYL GROUP HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 CA 4(CA 2+) FORMUL 7 EDO 10(C2 H6 O2) FORMUL 17 GOL C3 H8 O3 FORMUL 18 CL CL 1- FORMUL 21 A2G 2(C8 H15 N O6) FORMUL 23 HOH *484(H2 O) HELIX 1 AA1 TYR A 94 LEU A 98 5 5 HELIX 2 AA2 ASN A 108 ASN A 112 5 5 HELIX 3 AA3 GLN A 151 PHE A 156 1 6 HELIX 4 AA4 ASP A 193 PHE A 198 1 6 HELIX 5 AA5 TYR B 94 LEU B 98 5 5 HELIX 6 AA6 GLU B 102 ALA B 106 5 5 HELIX 7 AA7 GLN B 151 PHE B 156 1 6 HELIX 8 AA8 ASP B 193 PHE B 198 1 6 SHEET 1 AA1 4 LEU A 3 TYR A 7 0 SHEET 2 AA1 4 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA1 4 THR A 28 GLN A 30 -1 N LEU A 29 O ILE A 218 SHEET 4 AA1 4 SER A 23 ARG A 25 -1 N SER A 23 O GLN A 30 SHEET 1 AA2 6 LEU A 3 TYR A 7 0 SHEET 2 AA2 6 GLU A 214 SER A 227 -1 O TRP A 221 N TYR A 7 SHEET 3 AA2 6 THR A 59 THR A 71 -1 N ARG A 70 O THR A 215 SHEET 4 AA2 6 ALA A 161 ASP A 168 -1 O VAL A 165 N THR A 63 SHEET 5 AA2 6 ILE A 173 THR A 179 -1 O PHE A 177 N HIS A 164 SHEET 6 AA2 6 ASN A 185 VAL A 191 -1 O LEU A 188 N ALA A 176 SHEET 1 AA3 4 ILE A 16 GLY A 20 0 SHEET 2 AA3 4 ALA A 45 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA3 4 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA3 4 PHE A 54 GLN A 55 -1 N PHE A 54 O VAL A 202 SHEET 1 AA4 7 ILE A 16 GLY A 20 0 SHEET 2 AA4 7 ALA A 45 TYR A 50 -1 O VAL A 49 N THR A 17 SHEET 3 AA4 7 ASP A 201 GLN A 212 -1 O PHE A 206 N ALA A 48 SHEET 4 AA4 7 ALA A 77 ALA A 85 -1 N PHE A 83 O GLY A 205 SHEET 5 AA4 7 VAL A 115 ASP A 120 -1 O PHE A 119 N PHE A 80 SHEET 6 AA4 7 HIS A 134 VAL A 139 -1 O ASP A 138 N ALA A 116 SHEET 7 AA4 7 ARG A 146 ARG A 149 -1 O ARG A 146 N ILE A 137 SHEET 1 AA5 4 LEU B 3 TYR B 7 0 SHEET 2 AA5 4 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA5 4 THR B 28 GLN B 30 -1 N LEU B 29 O ILE B 218 SHEET 4 AA5 4 SER B 23 ARG B 25 -1 N SER B 23 O GLN B 30 SHEET 1 AA6 6 LEU B 3 TYR B 7 0 SHEET 2 AA6 6 GLU B 214 SER B 227 -1 O TRP B 221 N TYR B 7 SHEET 3 AA6 6 THR B 59 THR B 71 -1 N ARG B 70 O THR B 215 SHEET 4 AA6 6 ALA B 161 ASP B 168 -1 O VAL B 165 N THR B 63 SHEET 5 AA6 6 ILE B 173 THR B 179 -1 O THR B 179 N THR B 162 SHEET 6 AA6 6 ASN B 185 VAL B 191 -1 O LEU B 188 N ALA B 176 SHEET 1 AA7 7 ILE B 16 GLY B 20 0 SHEET 2 AA7 7 ARG B 44 TYR B 50 -1 O VAL B 49 N THR B 17 SHEET 3 AA7 7 ARG B 203 GLN B 212 -1 O PHE B 206 N ALA B 48 SHEET 4 AA7 7 ALA B 77 ALA B 85 -1 N PHE B 83 O GLY B 205 SHEET 5 AA7 7 VAL B 115 ASP B 120 -1 O PHE B 119 N PHE B 80 SHEET 6 AA7 7 HIS B 134 VAL B 139 -1 O ASP B 138 N ALA B 116 SHEET 7 AA7 7 ARG B 146 ARG B 149 -1 O ARG B 146 N ILE B 137 LINK C ACE a 100 N SER a 101 1555 1555 1.35 LINK OG SER a 102 C1 A2G a 201 1555 1555 1.39 LINK C ACE b 100 N SER b 101 1555 1555 1.34 LINK OG SER b 102 C1 A2G b 201 1555 1555 1.39 LINK OE2 GLU A 118 CA CA A 301 1555 1555 2.22 LINK OD2 ASP A 120 CA CA A 301 1555 1555 2.15 LINK OD1 ASP A 120 CA CA A 302 1555 1555 2.46 LINK OD2 ASP A 120 CA CA A 302 1555 1555 2.48 LINK O TRP A 122 CA CA A 302 1555 1555 2.32 LINK OD1 ASN A 124 CA CA A 302 1555 1555 2.34 LINK OE1AGLU A 129 CA CA A 301 1555 1555 2.24 LINK OE2BGLU A 129 CA CA A 301 1555 1555 2.18 LINK OE1BGLU A 129 CA CA A 302 1555 1555 2.41 LINK OE2AGLU A 129 CA CA A 302 1555 1555 2.39 LINK CA CA A 301 O HOH A 427 1555 1555 2.24 LINK CA CA A 301 O HOH A 448 1555 1555 2.16 LINK CA CA A 302 O HOH A 453 1555 1555 2.38 LINK CA CA A 302 O HOH A 486 1555 1555 2.41 LINK OE2 GLU B 118 CA CA B 301 1555 1555 2.22 LINK OD2 ASP B 120 CA CA B 301 1555 1555 2.15 LINK OD1 ASP B 120 CA CA B 302 1555 1555 2.44 LINK OD2 ASP B 120 CA CA B 302 1555 1555 2.46 LINK O TRP B 122 CA CA B 302 1555 1555 2.35 LINK OD1 ASN B 124 CA CA B 302 1555 1555 2.33 LINK OE1AGLU B 129 CA CA B 301 1555 1555 2.21 LINK OE1BGLU B 129 CA CA B 301 1555 1555 2.20 LINK OE2AGLU B 129 CA CA B 302 1555 1555 2.43 LINK OE2BGLU B 129 CA CA B 302 1555 1555 2.42 LINK CA CA B 301 O HOH B 427 1555 1555 2.24 LINK CA CA B 301 O HOH B 447 1555 1555 2.18 LINK CA CA B 302 O HOH B 457 1555 1555 2.39 LINK CA CA B 302 O HOH B 482 1555 1555 2.42 CISPEP 1 ALA A 77 ASP A 78 0 10.69 CISPEP 2 THR A 210 GLY A 211 0 -12.72 CISPEP 3 ALA B 77 ASP B 78 0 6.10 CISPEP 4 THR B 210 GLY B 211 0 -14.28 CRYST1 44.865 88.502 110.783 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009027 0.00000