HEADER HYDROLASE 06-SEP-16 5T82 TITLE HIV-1 REVERSE TRANSCRIPTASE THUMB SUBDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THUMB SUBDOMAIN RESIDUES 404-485; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THUMB SUBDOMAIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR A.M.GRONENBORN,N.G.SHARAF,I.-J.L.BYEON REVDAT 5 14-JUN-23 5T82 1 REMARK REVDAT 4 27-NOV-19 5T82 1 REMARK REVDAT 3 07-NOV-18 5T82 1 SOURCE REVDAT 2 20-SEP-17 5T82 1 COMPND REVDAT 1 18-JAN-17 5T82 0 JRNL AUTH N.G.SHARAF,A.E.BRERETON,I.L.BYEON,P.ANDREW KARPLUS, JRNL AUTH 2 A.M.GRONENBORN JRNL TITL NMR STRUCTURE OF THE HIV-1 REVERSE TRANSCRIPTASE THUMB JRNL TITL 2 SUBDOMAIN. JRNL REF J. BIOMOL. NMR V. 66 273 2016 JRNL REFN ISSN 1573-5001 JRNL PMID 27858311 JRNL DOI 10.1007/S10858-016-0077-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223489. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 G/L [U-13C] GLUCOSE, 1 G/L [U REMARK 210 -100% 15N] AMMONIUM CHLORIDE, 90% REMARK 210 H2O/10% D2O; 1 G/L [U-100% 15N] REMARK 210 AMMONIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 SIMULTANEOUS 13C - 15N EDITED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE600; AVANCE700 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 240 H VAL A 241 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 238 -65.01 -147.54 REMARK 500 1 TRP A 239 126.67 -172.99 REMARK 500 1 THR A 240 -145.49 -173.94 REMARK 500 1 VAL A 241 -172.21 -55.84 REMARK 500 1 ASP A 250 51.96 -105.33 REMARK 500 1 SER A 251 57.95 -165.27 REMARK 500 1 TYR A 271 118.70 -169.11 REMARK 500 1 VAL A 276 33.10 -142.20 REMARK 500 1 ARG A 284 -13.40 -47.75 REMARK 500 1 LEU A 310 -11.10 -48.51 REMARK 500 1 VAL A 314 -71.23 63.29 REMARK 500 1 VAL A 317 89.10 32.14 REMARK 500 1 TYR A 318 39.95 -171.87 REMARK 500 1 LEU A 319 -54.34 -136.93 REMARK 500 1 GLU A 320 98.80 50.51 REMARK 500 1 HIS A 321 -89.19 -97.50 REMARK 500 1 HIS A 322 110.56 -162.58 REMARK 500 1 HIS A 325 -60.36 -146.15 REMARK 500 2 LYS A 238 -53.38 -165.83 REMARK 500 2 VAL A 241 -125.52 -79.20 REMARK 500 2 SER A 251 56.55 178.33 REMARK 500 2 ARG A 284 102.56 -59.94 REMARK 500 2 LYS A 287 -108.77 -142.03 REMARK 500 2 LEU A 289 10.55 -58.99 REMARK 500 2 THR A 296 150.62 -46.31 REMARK 500 2 LEU A 310 -2.22 -57.51 REMARK 500 2 VAL A 314 -70.34 63.40 REMARK 500 2 HIS A 315 59.07 -96.04 REMARK 500 2 HIS A 323 -81.30 -147.42 REMARK 500 2 HIS A 324 90.78 47.80 REMARK 500 2 HIS A 325 -126.09 -100.15 REMARK 500 3 LYS A 238 -69.44 -166.58 REMARK 500 3 THR A 240 143.92 88.52 REMARK 500 3 VAL A 241 -115.54 -63.53 REMARK 500 3 ASP A 250 47.73 -101.27 REMARK 500 3 SER A 251 53.62 -150.34 REMARK 500 3 VAL A 276 28.10 -149.82 REMARK 500 3 ARG A 284 94.65 -35.70 REMARK 500 3 LYS A 287 -154.87 -90.87 REMARK 500 3 ALA A 288 -162.69 -53.43 REMARK 500 3 LYS A 311 34.77 -82.59 REMARK 500 3 VAL A 314 -71.66 62.24 REMARK 500 3 TYR A 318 84.24 55.38 REMARK 500 3 HIS A 323 -43.99 -172.64 REMARK 500 3 HIS A 324 107.61 56.90 REMARK 500 3 HIS A 325 -143.07 -98.66 REMARK 500 4 LYS A 238 -47.25 -145.15 REMARK 500 4 THR A 240 -56.40 -172.23 REMARK 500 4 VAL A 241 108.08 53.87 REMARK 500 4 GLN A 242 153.21 -39.65 REMARK 500 REMARK 500 THIS ENTRY HAS 488 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30171 RELATED DB: BMRB REMARK 900 HIV-1 REVERSE TRANSCRIPTASE THUMB SUBDOMAIN DBREF 5T82 A 237 318 UNP Q74596 Q74596_9HIV1 404 485 SEQADV 5T82 SER A 280 UNP Q74596 CYS 447 ENGINEERED MUTATION SEQADV 5T82 LEU A 319 UNP Q74596 EXPRESSION TAG SEQADV 5T82 GLU A 320 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 321 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 322 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 323 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 324 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 325 UNP Q74596 EXPRESSION TAG SEQADV 5T82 HIS A 326 UNP Q74596 EXPRESSION TAG SEQRES 1 A 90 ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO GLU LYS SEQRES 2 A 90 ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU VAL GLY SEQRES 3 A 90 LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY ILE LYS SEQRES 4 A 90 VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR LYS ALA SEQRES 5 A 90 LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA GLU LEU SEQRES 6 A 90 GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU PRO VAL SEQRES 7 A 90 HIS GLY VAL TYR LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 VAL A 254 GLN A 269 1 16 HELIX 2 AA2 ARG A 277 ARG A 284 1 8 HELIX 3 AA3 THR A 296 LEU A 310 1 15 SHEET 1 AA1 2 TRP A 252 THR A 253 0 SHEET 2 AA1 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1