HEADER TOXIN 06-SEP-16 5T86 TITLE CRYSTAL STRUCTURE OF CDI COMPLEX FROM E. COLI A0 34/86 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDIA TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CLONED FRAGMENT STARTS WITH V3033 OF THE ORIGINAL COMPND 7 SEQUENCE. THE PURIFIED COMPLEX WAS TRYPSIN-TREATED AND THE SEQUENCE COMPND 8 OF MOST LIKELY CLEAVAGE PRODUCT IS PROVIDED.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CDII IMMUNITY PROTEIN; COMPND 11 CHAIN: I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ECO1013; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG81; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: AGA26_04870; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMCSG81 KEYWDS CONTACT-DEPENDENT GROWTH INHIBITION, TOXIN, ANTITOXIN, IMMUNITY KEYWDS 2 PROTEIN, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, STRUCTURE-FUNCTION ANALYSIS OF KEYWDS 4 POLYMORPHIC CDI TOXIN-IMMUNITY PROTEIN COMPLEXES, UC4CDI EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,L.STOLS,R.JEDRZEJCZAK,C.S.HAYES,C.W.GOULDING, AUTHOR 2 A.JOACHIMIAK,STRUCTURE-FUNCTION ANALYSIS OF POLYMORPHIC CDI TOXIN- AUTHOR 3 IMMUNITY PROTEIN COMPLEXES (UC4CDI),MIDWEST CENTER FOR STRUCTURAL AUTHOR 4 GENOMICS (MCSG) REVDAT 3 25-DEC-19 5T86 1 REMARK REVDAT 2 27-SEP-17 5T86 1 REMARK REVDAT 1 13-SEP-17 5T86 0 JRNL AUTH K.MICHALSKA,L.STOLS,R.JEDRZEJCZAK,C.S.HAYES,C.W.GOULDING, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 STRUCTURE-FUNCTION ANALYSIS OF POLYMORPHIC CDI TOXIN- JRNL AUTH 4 IMMUNITY PROTEIN COMPLEXES (UC4CDI), JRNL AUTH 5 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF CDI COMPLEX FROM E. COLI A0 34/86 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 15909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1856 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1789 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2501 ; 1.562 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4118 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;32.786 ;24.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;13.760 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2111 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 416 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 915 ; 0.681 ; 1.690 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 0.659 ; 1.670 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 1.064 ; 2.502 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1135 ; 1.063 ; 2.503 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 941 ; 1.131 ; 1.827 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 942 ; 1.131 ; 1.830 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1368 ; 1.695 ; 2.691 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2064 ; 3.861 ;20.113 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2065 ; 3.860 ;20.122 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8078 -4.4478 25.9223 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.6160 REMARK 3 T33: 0.0236 T12: -0.1803 REMARK 3 T13: 0.0005 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 6.8465 L22: 10.3785 REMARK 3 L33: 9.1741 L12: 3.2027 REMARK 3 L13: 0.0702 L23: -4.5115 REMARK 3 S TENSOR REMARK 3 S11: -0.7239 S12: 1.5985 S13: -0.0021 REMARK 3 S21: -1.3441 S22: 0.8897 S23: 0.1358 REMARK 3 S31: 0.5706 S32: -0.8909 S33: -0.1658 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4561 -11.0214 28.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1111 REMARK 3 T33: 0.0874 T12: -0.0372 REMARK 3 T13: 0.0070 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 10.0971 L22: 2.4068 REMARK 3 L33: 2.7369 L12: -0.4557 REMARK 3 L13: -0.9254 L23: 0.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.1325 S13: 0.0546 REMARK 3 S21: -0.1688 S22: -0.0504 S23: -0.0226 REMARK 3 S31: 0.3883 S32: -0.1053 S33: -0.0583 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 39.2432 -11.6883 39.3332 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1380 REMARK 3 T33: 0.2029 T12: 0.0664 REMARK 3 T13: 0.0665 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 5.1803 L22: 6.5327 REMARK 3 L33: 2.8065 L12: -2.7544 REMARK 3 L13: -0.3859 L23: 2.0914 REMARK 3 S TENSOR REMARK 3 S11: -0.2473 S12: -0.1698 S13: -0.4915 REMARK 3 S21: -0.1319 S22: 0.1376 S23: -0.4068 REMARK 3 S31: 0.2569 S32: 0.5441 S33: 0.1097 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9235 0.9155 48.5547 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.2774 REMARK 3 T33: 0.3702 T12: -0.0398 REMARK 3 T13: 0.1042 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 5.0149 L22: 2.4891 REMARK 3 L33: 1.9971 L12: -3.5045 REMARK 3 L13: -3.1492 L23: 2.2277 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.2126 S13: 0.0973 REMARK 3 S21: 0.0100 S22: -0.1445 S23: 0.0232 REMARK 3 S31: -0.0208 S32: -0.1436 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0127 -2.5937 35.3257 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0303 REMARK 3 T33: 0.0103 T12: -0.0272 REMARK 3 T13: 0.0226 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 7.3473 L22: 0.5669 REMARK 3 L33: 4.1086 L12: 0.9912 REMARK 3 L13: -3.2699 L23: 0.5455 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0003 S13: 0.1194 REMARK 3 S21: -0.0282 S22: 0.0564 S23: -0.0087 REMARK 3 S31: 0.0911 S32: 0.0367 S33: -0.0546 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7448 -0.6572 27.8452 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.0542 REMARK 3 T33: 0.0194 T12: 0.0120 REMARK 3 T13: 0.0046 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 11.4712 L22: 1.7811 REMARK 3 L33: 1.3727 L12: 2.7082 REMARK 3 L13: -0.1962 L23: -0.7106 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.3341 S13: 0.0534 REMARK 3 S21: -0.1543 S22: 0.0619 S23: 0.0176 REMARK 3 S31: 0.0069 S32: -0.0898 S33: 0.0330 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2814 -1.8201 37.0633 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: 0.0910 REMARK 3 T33: 0.1207 T12: -0.0322 REMARK 3 T13: -0.0183 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 5.7676 L22: 4.9414 REMARK 3 L33: 9.5981 L12: -3.7345 REMARK 3 L13: 0.7421 L23: 0.7798 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: -0.0647 S13: -0.0597 REMARK 3 S21: -0.0565 S22: 0.0216 S23: 0.3281 REMARK 3 S31: -0.3509 S32: -0.4786 S33: 0.1214 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5593 -9.1944 42.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.0113 REMARK 3 T33: 0.0472 T12: -0.0148 REMARK 3 T13: 0.0500 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 10.3144 L22: 11.5280 REMARK 3 L33: 6.6734 L12: -5.3259 REMARK 3 L13: 5.2496 L23: -8.6353 REMARK 3 S TENSOR REMARK 3 S11: 0.1479 S12: -0.0776 S13: -0.0937 REMARK 3 S21: 0.0278 S22: 0.1209 S23: 0.4001 REMARK 3 S31: 0.0198 S32: -0.0891 S33: -0.2688 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 2 I 11 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0834 1.7242 43.2742 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0980 REMARK 3 T33: 0.0639 T12: 0.0154 REMARK 3 T13: 0.0003 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.2813 L22: 11.3782 REMARK 3 L33: 2.7359 L12: 3.1174 REMARK 3 L13: 2.5135 L23: 2.0204 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.0991 S13: -0.1119 REMARK 3 S21: 0.1168 S22: -0.1312 S23: 0.0374 REMARK 3 S31: 0.0951 S32: 0.1711 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 12 I 33 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7762 11.1135 53.7745 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0399 REMARK 3 T33: 0.0351 T12: 0.0199 REMARK 3 T13: -0.0163 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.2343 L22: 1.8840 REMARK 3 L33: 3.9776 L12: -0.9823 REMARK 3 L13: -1.0720 L23: -0.9578 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.2674 S13: -0.2291 REMARK 3 S21: 0.1245 S22: 0.1067 S23: 0.0322 REMARK 3 S31: -0.0512 S32: 0.0916 S33: -0.0634 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 34 I 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8932 11.8461 43.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1404 REMARK 3 T33: 0.1091 T12: -0.0257 REMARK 3 T13: 0.0378 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.5291 L22: 8.4782 REMARK 3 L33: 1.5908 L12: 2.5945 REMARK 3 L13: -0.8586 L23: -3.5680 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.0337 S13: -0.2958 REMARK 3 S21: -0.1084 S22: 0.0960 S23: -0.1193 REMARK 3 S31: 0.0600 S32: -0.0986 S33: -0.0172 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 43 I 48 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0565 21.3871 38.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0917 REMARK 3 T33: 0.0776 T12: 0.0080 REMARK 3 T13: -0.0108 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 5.4798 L22: 1.5514 REMARK 3 L33: 8.5781 L12: -0.5530 REMARK 3 L13: -2.4744 L23: 1.0904 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.5136 S13: 0.4475 REMARK 3 S21: 0.0274 S22: 0.1119 S23: -0.0302 REMARK 3 S31: -0.1155 S32: 0.0991 S33: -0.1070 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 49 I 59 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7284 19.4035 31.8414 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0539 REMARK 3 T33: 0.0277 T12: 0.0060 REMARK 3 T13: 0.0227 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 9.9944 L22: 8.7683 REMARK 3 L33: 4.2659 L12: 3.1356 REMARK 3 L13: 1.8483 L23: -0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.3936 S13: 0.2064 REMARK 3 S21: -0.4858 S22: -0.0094 S23: -0.2628 REMARK 3 S31: 0.0106 S32: 0.2682 S33: -0.0480 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 60 I 65 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5948 25.5392 43.4009 REMARK 3 T TENSOR REMARK 3 T11: 0.2822 T22: 0.1748 REMARK 3 T33: 0.1730 T12: -0.0212 REMARK 3 T13: 0.0239 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 8.6084 L22: 8.6425 REMARK 3 L33: 6.3683 L12: 1.5321 REMARK 3 L13: 5.5533 L23: -3.8405 REMARK 3 S TENSOR REMARK 3 S11: -0.2215 S12: 0.6288 S13: 0.4424 REMARK 3 S21: 1.3999 S22: -0.0926 S23: 0.0389 REMARK 3 S31: -0.9785 S32: 0.5275 S33: 0.3142 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 66 I 112 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4564 10.6371 42.7874 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0416 REMARK 3 T33: 0.0182 T12: 0.0233 REMARK 3 T13: -0.0024 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.4626 L22: 0.5519 REMARK 3 L33: 3.2911 L12: -0.9049 REMARK 3 L13: -1.0050 L23: -0.3726 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.1708 S13: 0.1606 REMARK 3 S21: 0.0880 S22: 0.0693 S23: -0.0583 REMARK 3 S31: -0.1482 S32: 0.1275 S33: -0.0626 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 113 I 124 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4281 16.0401 36.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0375 REMARK 3 T33: 0.0735 T12: 0.0009 REMARK 3 T13: -0.0156 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.6875 L22: 12.6132 REMARK 3 L33: 5.0295 L12: -1.8888 REMARK 3 L13: -2.0847 L23: 0.4207 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 0.1388 S13: 0.4759 REMARK 3 S21: -0.5139 S22: -0.0255 S23: -0.0706 REMARK 3 S31: -0.5272 S32: -0.0961 S33: -0.0924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5T86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000221876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% TACSIMATE PH 4.0, 0.1 M NA ACETATE, REMARK 280 16% PEG3350, CRYO 19% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.96700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.53700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.82600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.53700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.96700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.82600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 150 REMARK 465 GLU A 151 REMARK 465 MSE I 1 REMARK 465 HIS I 125 REMARK 465 HIS I 126 REMARK 465 HIS I 127 REMARK 465 HIS I 128 REMARK 465 HIS I 129 REMARK 465 HIS I 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 242 -169.28 -119.28 REMARK 500 ASP I 14 88.23 -159.69 REMARK 500 ALA I 36 147.99 -172.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT I 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC111439 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: MCSG-APC111453 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5T87 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN SEQUENCE FOR THIS PARTICULAR STRAIN IS NOT YET IN THE REMARK 999 UNP DATABASE DBREF 5T86 A 150 255 UNP Q1RPM1 Q1RPM1_ECOLX 3182 3287 DBREF1 5T86 I 1 124 UNP A0A0B0W5A7_ECOLX DBREF2 5T86 I A0A0B0W5A7 1 124 SEQADV 5T86 ARG I 46 UNP A0A0B0W5A TRP 46 SEE REMARK 999 SEQADV 5T86 SER I 58 UNP A0A0B0W5A CYS 58 SEE REMARK 999 SEQADV 5T86 HIS I 125 UNP A0A0B0W5A EXPRESSION TAG SEQADV 5T86 HIS I 126 UNP A0A0B0W5A EXPRESSION TAG SEQADV 5T86 HIS I 127 UNP A0A0B0W5A EXPRESSION TAG SEQADV 5T86 HIS I 128 UNP A0A0B0W5A EXPRESSION TAG SEQADV 5T86 HIS I 129 UNP A0A0B0W5A EXPRESSION TAG SEQADV 5T86 HIS I 130 UNP A0A0B0W5A EXPRESSION TAG SEQRES 1 A 106 ILE GLU GLN ILE LEU LYS PRO GLU LYS ASN TRP GLU THR SEQRES 2 A 106 ALA ARG ASN LYS ALA LEU ASP LEU VAL GLY ASN LEU GLY SEQRES 3 A 106 ALA ASP SER LYS PRO VAL ILE GLY ARG LEU GLU VAL SER SEQRES 4 A 106 ALA GLY ASN GLY LYS VAL ILE GLY ARG GLN SER SER ASP SEQRES 5 A 106 GLY LYS VAL GLY TRP ARG VAL ASP TYR ASP PRO GLU LYS SEQRES 6 A 106 GLY THR HIS ILE ASN ILE TRP ASP TYR SER GLN GLY LYS SEQRES 7 A 106 GLY PRO GLY LYS ALA VAL LYS GLN VAL ILE PRO PHE GLU SEQRES 8 A 106 GLY ASN GLU LYS SER PHE GLU THR ILE LEU LYS GLN LEU SEQRES 9 A 106 ASN ARG SEQRES 1 I 130 MSE THR LEU PHE ASP GLU CYS ARG GLU ALA LEU SER ALA SEQRES 2 I 130 ASP PHE ASN ILE VAL GLU GLY LEU ALA GLN GLN GLU ALA SEQRES 3 I 130 LEU GLY ILE LEU ASN LYS TYR PRO LEU ALA LYS GLY SER SEQRES 4 I 130 VAL THR TRP SER GLU ILE ARG HIS SER ASP TYR GLU SER SEQRES 5 I 130 PHE ASP GLU LEU LEU SER ALA ASN SER VAL LYS ASN ASP SEQRES 6 I 130 ASP MSE PHE VAL PHE ALA ASP ASP ALA SER ILE PRO VAL SEQRES 7 I 130 PHE ARG SER ASN LEU ARG LEU ILE ALA GLU ASN ILE TYR SEQRES 8 I 130 ASP VAL THR ALA LEU SER PRO LYS LEU PHE ILE PHE ASN SEQRES 9 I 130 ASP GLU VAL ILE ILE GLN PRO LEU PHE PRO THR ASP MSE SEQRES 10 I 130 PHE ARG LEU GLY ILE LYS LYS HIS HIS HIS HIS HIS HIS MODRES 5T86 MSE I 67 MET MODIFIED RESIDUE MODRES 5T86 MSE I 117 MET MODIFIED RESIDUE HET MSE I 67 8 HET MSE I 117 8 HET ACT A 301 4 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 304 4 HET ACT I 201 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 2 MSE 2(C5 H11 N O2 SE) FORMUL 3 ACT 5(C2 H3 O2 1-) FORMUL 8 HOH *106(H2 O) HELIX 1 AA1 ASN A 159 GLY A 172 1 14 HELIX 2 AA2 ASN A 242 ASN A 254 1 13 HELIX 3 AA3 LEU I 3 LEU I 11 1 9 HELIX 4 AA4 SER I 12 PHE I 15 5 4 HELIX 5 AA5 GLY I 20 LYS I 32 1 13 HELIX 6 AA6 TRP I 42 ILE I 45 5 4 HELIX 7 AA7 SER I 52 ASN I 60 1 9 HELIX 8 AA8 LEU I 83 ASN I 89 1 7 HELIX 9 AA9 ASN I 89 ALA I 95 1 7 SHEET 1 AA1 5 LYS A 179 ILE A 182 0 SHEET 2 AA1 5 VAL A 194 GLN A 198 -1 O ILE A 195 N VAL A 181 SHEET 3 AA1 5 VAL A 204 ASP A 211 -1 O VAL A 208 N ILE A 195 SHEET 4 AA1 5 GLY A 215 ASP A 222 -1 O GLY A 215 N ASP A 211 SHEET 5 AA1 5 VAL A 233 PRO A 238 -1 O GLN A 235 N ILE A 220 SHEET 1 AA2 7 ASN I 16 VAL I 18 0 SHEET 2 AA2 7 VAL I 78 ASN I 82 -1 O VAL I 78 N VAL I 18 SHEET 3 AA2 7 ASP I 66 ALA I 71 -1 N VAL I 69 O PHE I 79 SHEET 4 AA2 7 LEU I 100 PHE I 103 -1 O PHE I 103 N PHE I 68 SHEET 5 AA2 7 VAL I 107 PRO I 111 -1 O ILE I 109 N ILE I 102 SHEET 6 AA2 7 PHE I 118 ILE I 122 -1 O GLY I 121 N ILE I 108 SHEET 7 AA2 7 HIS I 47 TYR I 50 -1 N SER I 48 O LEU I 120 SHEET 1 AA3 2 LEU I 35 ALA I 36 0 SHEET 2 AA3 2 SER I 39 VAL I 40 -1 O SER I 39 N ALA I 36 LINK C ASP I 66 N MSE I 67 1555 1555 1.32 LINK C MSE I 67 N PHE I 68 1555 1555 1.34 LINK C ASP I 116 N MSE I 117 1555 1555 1.34 LINK C MSE I 117 N PHE I 118 1555 1555 1.32 CISPEP 1 PHE I 113 PRO I 114 0 10.03 SITE 1 AC1 6 LYS A 214 HIS A 217 ASN A 219 PRO I 98 SITE 2 AC1 6 LYS I 99 HOH I 304 SITE 1 AC2 2 GLU A 161 ALA A 176 SITE 1 AC3 3 LYS A 251 ASN A 254 GLU I 25 SITE 1 AC4 4 SER A 199 ASP A 201 HOH A 413 LEU I 21 SITE 1 AC5 2 GLU A 186 ASN I 31 CRYST1 57.934 59.652 71.074 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014070 0.00000