HEADER TRANSFERASE 07-SEP-16 5T89 TITLE CRYSTAL STRUCTURE OF VEGF-A IN COMPLEX WITH VEGFR-1 DOMAINS D1-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR A; COMPND 3 CHAIN: V, W; COMPND 4 SYNONYM: VEGF-A,VASCULAR PERMEABILITY FACTOR,VPF; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1; COMPND 8 CHAIN: X, Y; COMPND 9 SYNONYM: VEGFR-1,FMS-LIKE TYROSINE KINASE 1,FLT-1,TYROSINE-PROTEIN COMPND 10 KINASE FRT,TYROSINE-PROTEIN KINASE RECEPTOR FLT,FLT,VASCULAR COMPND 11 PERMEABILITY FACTOR RECEPTOR; COMPND 12 EC: 2.7.10.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VEGFA, VEGF; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: FLT1, FLT, FRT, VEGFR1; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS RECEPTOR TYROSINE KINASE, GROWTH FACTOR, IMMUNOGLOBULIN DOMAIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MARKOVIC-MUELLER,E.STUTTFELD,M.ASTHANA,T.WEINERT,S.BLIVEN, AUTHOR 2 K.N.GOLDIE,K.KISKO,G.CAPITANI,K.BALLMER-HOFER REVDAT 5 29-JUL-20 5T89 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-OCT-17 5T89 1 REMARK REVDAT 3 13-SEP-17 5T89 1 REMARK REVDAT 2 15-FEB-17 5T89 1 JRNL REVDAT 1 01-FEB-17 5T89 0 JRNL AUTH S.MARKOVIC-MUELLER,E.STUTTFELD,M.ASTHANA,T.WEINERT,S.BLIVEN, JRNL AUTH 2 K.N.GOLDIE,K.KISKO,G.CAPITANI,K.BALLMER-HOFER JRNL TITL STRUCTURE OF THE FULL-LENGTH VEGFR-1 EXTRACELLULAR DOMAIN IN JRNL TITL 2 COMPLEX WITH VEGF-A. JRNL REF STRUCTURE V. 25 341 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28111021 JRNL DOI 10.1016/J.STR.2016.12.012 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2420 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9881 - 7.1740 1.00 4400 137 0.2286 0.2665 REMARK 3 2 7.1740 - 5.7386 1.00 4326 133 0.3228 0.3465 REMARK 3 3 5.7386 - 5.0264 1.00 4364 135 0.2890 0.2924 REMARK 3 4 5.0264 - 4.5728 0.99 4285 133 0.2930 0.3226 REMARK 3 5 4.5728 - 4.2484 0.99 4299 132 0.3263 0.3536 REMARK 3 6 4.2484 - 4.0001 0.99 4264 132 0.3842 0.4552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.750 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 138.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 223.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 11616 REMARK 3 ANGLE : 0.710 15760 REMARK 3 CHIRALITY : 0.050 1862 REMARK 3 PLANARITY : 0.005 1960 REMARK 3 DIHEDRAL : 11.002 7075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26988 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.00200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-14% PEG3000 200 MM CALCIUM CHLORIDE REMARK 280 100 MM MES PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.35500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.35500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, W, X, Y, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY V -9 REMARK 465 SER V -8 REMARK 465 HIS V -7 REMARK 465 HIS V -6 REMARK 465 HIS V -5 REMARK 465 HIS V -4 REMARK 465 HIS V -3 REMARK 465 HIS V -2 REMARK 465 GLY V -1 REMARK 465 SER V 0 REMARK 465 ALA V 1 REMARK 465 PRO V 2 REMARK 465 MET V 3 REMARK 465 ALA V 4 REMARK 465 GLU V 5 REMARK 465 GLY V 6 REMARK 465 GLY V 7 REMARK 465 GLY V 8 REMARK 465 GLN V 9 REMARK 465 ASN V 10 REMARK 465 HIS V 11 REMARK 465 HIS V 12 REMARK 465 ASP V 109 REMARK 465 ARG V 110 REMARK 465 ALA V 111 REMARK 465 ARG V 112 REMARK 465 GLN V 113 REMARK 465 GLU V 114 REMARK 465 ASN V 115 REMARK 465 CYS V 116 REMARK 465 ASP V 117 REMARK 465 LYS V 118 REMARK 465 PRO V 119 REMARK 465 ARG V 120 REMARK 465 ARG V 121 REMARK 465 GLY W -9 REMARK 465 SER W -8 REMARK 465 HIS W -7 REMARK 465 HIS W -6 REMARK 465 HIS W -5 REMARK 465 HIS W -4 REMARK 465 HIS W -3 REMARK 465 HIS W -2 REMARK 465 GLY W -1 REMARK 465 SER W 0 REMARK 465 ALA W 1 REMARK 465 PRO W 2 REMARK 465 MET W 3 REMARK 465 ALA W 4 REMARK 465 GLU W 5 REMARK 465 GLY W 6 REMARK 465 GLY W 7 REMARK 465 GLY W 8 REMARK 465 GLN W 9 REMARK 465 ASN W 10 REMARK 465 HIS W 11 REMARK 465 HIS W 12 REMARK 465 ASP W 109 REMARK 465 ARG W 110 REMARK 465 ALA W 111 REMARK 465 ARG W 112 REMARK 465 GLN W 113 REMARK 465 GLU W 114 REMARK 465 ASN W 115 REMARK 465 CYS W 116 REMARK 465 ASP W 117 REMARK 465 LYS W 118 REMARK 465 PRO W 119 REMARK 465 ARG W 120 REMARK 465 ARG W 121 REMARK 465 SER X 27 REMARK 465 LYS X 28 REMARK 465 LEU X 29 REMARK 465 LYS X 30 REMARK 465 ASP X 31 REMARK 465 THR X 77 REMARK 465 LYS X 78 REMARK 465 SER X 79 REMARK 465 ALA X 80 REMARK 465 CYS X 81 REMARK 465 GLY X 82 REMARK 465 ARG X 83 REMARK 465 ASN X 84 REMARK 465 LYS X 117 REMARK 465 LYS X 118 REMARK 465 GLU X 119 REMARK 465 SER X 285 REMARK 465 ASN X 286 REMARK 465 HIS X 473 REMARK 465 ASN X 474 REMARK 465 HIS X 475 REMARK 465 SER X 476 REMARK 465 GLU X 477 REMARK 465 ALA X 478 REMARK 465 ARG X 479 REMARK 465 CYS X 480 REMARK 465 ASP X 481 REMARK 465 PHE X 482 REMARK 465 CYS X 483 REMARK 465 SER X 484 REMARK 465 ASN X 485 REMARK 465 ASN X 486 REMARK 465 ILE X 655 REMARK 465 ARG X 656 REMARK 465 ASP X 657 REMARK 465 GLN X 658 REMARK 465 GLU X 659 REMARK 465 ALA X 660 REMARK 465 ILE X 661 REMARK 465 GLU X 662 REMARK 465 GLY X 663 REMARK 465 ARG X 664 REMARK 465 HIS X 665 REMARK 465 HIS X 666 REMARK 465 HIS X 667 REMARK 465 HIS X 668 REMARK 465 HIS X 669 REMARK 465 HIS X 670 REMARK 465 HIS X 671 REMARK 465 HIS X 672 REMARK 465 SER Y 27 REMARK 465 LYS Y 28 REMARK 465 LEU Y 29 REMARK 465 LYS Y 30 REMARK 465 THR Y 77 REMARK 465 LYS Y 78 REMARK 465 SER Y 79 REMARK 465 ALA Y 80 REMARK 465 CYS Y 81 REMARK 465 GLY Y 82 REMARK 465 ARG Y 83 REMARK 465 ASN Y 84 REMARK 465 LYS Y 116 REMARK 465 LYS Y 117 REMARK 465 LYS Y 118 REMARK 465 GLU Y 119 REMARK 465 SER Y 285 REMARK 465 ASN Y 286 REMARK 465 ASN Y 474 REMARK 465 HIS Y 475 REMARK 465 SER Y 476 REMARK 465 GLU Y 477 REMARK 465 ALA Y 478 REMARK 465 ARG Y 479 REMARK 465 CYS Y 480 REMARK 465 ASP Y 481 REMARK 465 PHE Y 482 REMARK 465 CYS Y 483 REMARK 465 SER Y 484 REMARK 465 ASN Y 485 REMARK 465 ASN Y 486 REMARK 465 ILE Y 655 REMARK 465 ARG Y 656 REMARK 465 ASP Y 657 REMARK 465 GLN Y 658 REMARK 465 GLU Y 659 REMARK 465 ALA Y 660 REMARK 465 ILE Y 661 REMARK 465 GLU Y 662 REMARK 465 GLY Y 663 REMARK 465 ARG Y 664 REMARK 465 HIS Y 665 REMARK 465 HIS Y 666 REMARK 465 HIS Y 667 REMARK 465 HIS Y 668 REMARK 465 HIS Y 669 REMARK 465 HIS Y 670 REMARK 465 HIS Y 671 REMARK 465 HIS Y 672 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO V 85 REMARK 475 HIS V 86 REMARK 475 GLN V 87 REMARK 475 MET V 94 REMARK 475 ARG X 54 REMARK 475 GLY X 55 REMARK 475 GLU X 56 REMARK 475 ALA X 57 REMARK 475 ALA X 58 REMARK 475 LYS X 108 REMARK 475 TYR X 109 REMARK 475 LEU X 110 REMARK 475 ALA X 111 REMARK 475 VAL X 112 REMARK 475 PRO X 113 REMARK 475 THR X 114 REMARK 475 SER X 115 REMARK 475 LYS X 116 REMARK 475 THR X 120 REMARK 475 GLU X 121 REMARK 475 SER X 122 REMARK 475 ALA X 123 REMARK 475 ILE X 124 REMARK 475 THR X 131 REMARK 475 GLY X 132 REMARK 475 ARG X 159 REMARK 475 LYS X 331 REMARK 475 ALA X 332 REMARK 475 ASP X 572 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS X 101 O7 NAG A 1 2.06 REMARK 500 NZ LYS Y 241 OD2 ASP Y 330 2.08 REMARK 500 OE1 GLU Y 150 NH1 ARG Y 224 2.12 REMARK 500 OH TYR Y 383 OD1 ASP Y 399 2.16 REMARK 500 NH2 ARG V 23 OE2 GLU W 30 2.18 REMARK 500 O PRO X 32 OG SER X 122 2.18 REMARK 500 OG SER X 106 O SER X 122 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS V 26 104.08 -47.25 REMARK 500 HIS V 86 -0.59 58.44 REMARK 500 CYS W 26 107.92 -57.14 REMARK 500 HIS W 86 -2.82 60.63 REMARK 500 GLN W 87 65.05 -112.72 REMARK 500 CYS X 53 85.02 -155.71 REMARK 500 VAL X 67 -135.44 -80.12 REMARK 500 THR X 96 -177.66 57.39 REMARK 500 TYR X 109 31.57 -89.97 REMARK 500 CYS X 158 68.68 -105.84 REMARK 500 LYS X 182 -79.00 -118.80 REMARK 500 ASN X 196 79.20 55.67 REMARK 500 ASN X 227 73.69 -155.88 REMARK 500 ILE X 229 96.35 -64.95 REMARK 500 ILE X 230 -74.85 -62.69 REMARK 500 PRO X 237 1.89 -68.12 REMARK 500 ARG X 244 98.38 -68.54 REMARK 500 PRO X 257 -149.62 -76.90 REMARK 500 ASP X 270 -168.87 -78.16 REMARK 500 LYS X 272 105.46 -56.92 REMARK 500 ASN X 273 -86.87 -87.69 REMARK 500 LYS X 274 -147.10 -134.27 REMARK 500 ALA X 276 108.66 -161.90 REMARK 500 SER X 315 29.74 -143.71 REMARK 500 TYR X 329 -16.42 88.67 REMARK 500 LYS X 331 -64.87 -97.03 REMARK 500 HIS X 338 -147.91 -141.14 REMARK 500 LYS X 340 33.81 -144.02 REMARK 500 GLN X 342 50.08 -118.10 REMARK 500 VAL X 343 48.19 -108.26 REMARK 500 PRO X 363 -147.85 -83.70 REMARK 500 LEU X 374 -55.81 -146.80 REMARK 500 THR X 377 -63.35 -101.16 REMARK 500 GLU X 378 58.18 -111.27 REMARK 500 ALA X 381 -26.18 63.35 REMARK 500 ARG X 382 -148.01 -80.57 REMARK 500 TYR X 383 -164.72 58.71 REMARK 500 THR X 385 -134.27 -105.83 REMARK 500 ARG X 386 129.87 66.33 REMARK 500 LEU X 390 85.94 -154.26 REMARK 500 LYS X 393 -81.80 -66.42 REMARK 500 LYS X 410 -167.67 -78.84 REMARK 500 SER X 412 -6.45 -158.71 REMARK 500 LYS X 427 151.65 68.79 REMARK 500 PRO X 439 100.10 -44.02 REMARK 500 ASP X 440 144.37 -36.19 REMARK 500 PRO X 441 104.70 -18.86 REMARK 500 ALA X 494 34.09 -162.00 REMARK 500 MET X 498 -8.03 -145.26 REMARK 500 ASN X 539 -147.05 -108.95 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP Y 372 GLY Y 373 -149.96 REMARK 500 ASP Y 440 PRO Y 441 139.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG X 710 REMARK 610 NAG Y 711 DBREF 5T89 V 1 121 UNP P15692 VEGFA_HUMAN 27 147 DBREF 5T89 W 1 121 UNP P15692 VEGFA_HUMAN 27 147 DBREF 5T89 X 27 656 UNP P17948 VGFR1_HUMAN 27 656 DBREF 5T89 Y 27 656 UNP P17948 VGFR1_HUMAN 27 656 SEQADV 5T89 GLY V -9 UNP P15692 EXPRESSION TAG SEQADV 5T89 SER V -8 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -7 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -6 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -5 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -4 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -3 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS V -2 UNP P15692 EXPRESSION TAG SEQADV 5T89 GLY V -1 UNP P15692 EXPRESSION TAG SEQADV 5T89 SER V 0 UNP P15692 EXPRESSION TAG SEQADV 5T89 ASN V 115 UNP P15692 LYS 141 CONFLICT SEQADV 5T89 GLY W -9 UNP P15692 EXPRESSION TAG SEQADV 5T89 SER W -8 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -7 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -6 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -5 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -4 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -3 UNP P15692 EXPRESSION TAG SEQADV 5T89 HIS W -2 UNP P15692 EXPRESSION TAG SEQADV 5T89 GLY W -1 UNP P15692 EXPRESSION TAG SEQADV 5T89 SER W 0 UNP P15692 EXPRESSION TAG SEQADV 5T89 ASN W 115 UNP P15692 LYS 141 CONFLICT SEQADV 5T89 ASP X 657 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLN X 658 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLU X 659 UNP P17948 EXPRESSION TAG SEQADV 5T89 ALA X 660 UNP P17948 EXPRESSION TAG SEQADV 5T89 ILE X 661 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLU X 662 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLY X 663 UNP P17948 EXPRESSION TAG SEQADV 5T89 ARG X 664 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 665 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 666 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 667 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 668 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 669 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 670 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 671 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS X 672 UNP P17948 EXPRESSION TAG SEQADV 5T89 ASP Y 657 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLN Y 658 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLU Y 659 UNP P17948 EXPRESSION TAG SEQADV 5T89 ALA Y 660 UNP P17948 EXPRESSION TAG SEQADV 5T89 ILE Y 661 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLU Y 662 UNP P17948 EXPRESSION TAG SEQADV 5T89 GLY Y 663 UNP P17948 EXPRESSION TAG SEQADV 5T89 ARG Y 664 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 665 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 666 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 667 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 668 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 669 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 670 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 671 UNP P17948 EXPRESSION TAG SEQADV 5T89 HIS Y 672 UNP P17948 EXPRESSION TAG SEQRES 1 V 131 GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA PRO MET SEQRES 2 V 131 ALA GLU GLY GLY GLY GLN ASN HIS HIS GLU VAL VAL LYS SEQRES 3 V 131 PHE MET ASP VAL TYR GLN ARG SER TYR CYS HIS PRO ILE SEQRES 4 V 131 GLU THR LEU VAL ASP ILE PHE GLN GLU TYR PRO ASP GLU SEQRES 5 V 131 ILE GLU TYR ILE PHE LYS PRO SER CYS VAL PRO LEU MET SEQRES 6 V 131 ARG CYS GLY GLY CYS CYS ASN ASP GLU GLY LEU GLU CYS SEQRES 7 V 131 VAL PRO THR GLU GLU SER ASN ILE THR MET GLN ILE MET SEQRES 8 V 131 ARG ILE LYS PRO HIS GLN GLY GLN HIS ILE GLY GLU MET SEQRES 9 V 131 SER PHE LEU GLN HIS ASN LYS CYS GLU CYS ARG PRO LYS SEQRES 10 V 131 LYS ASP ARG ALA ARG GLN GLU ASN CYS ASP LYS PRO ARG SEQRES 11 V 131 ARG SEQRES 1 W 131 GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA PRO MET SEQRES 2 W 131 ALA GLU GLY GLY GLY GLN ASN HIS HIS GLU VAL VAL LYS SEQRES 3 W 131 PHE MET ASP VAL TYR GLN ARG SER TYR CYS HIS PRO ILE SEQRES 4 W 131 GLU THR LEU VAL ASP ILE PHE GLN GLU TYR PRO ASP GLU SEQRES 5 W 131 ILE GLU TYR ILE PHE LYS PRO SER CYS VAL PRO LEU MET SEQRES 6 W 131 ARG CYS GLY GLY CYS CYS ASN ASP GLU GLY LEU GLU CYS SEQRES 7 W 131 VAL PRO THR GLU GLU SER ASN ILE THR MET GLN ILE MET SEQRES 8 W 131 ARG ILE LYS PRO HIS GLN GLY GLN HIS ILE GLY GLU MET SEQRES 9 W 131 SER PHE LEU GLN HIS ASN LYS CYS GLU CYS ARG PRO LYS SEQRES 10 W 131 LYS ASP ARG ALA ARG GLN GLU ASN CYS ASP LYS PRO ARG SEQRES 11 W 131 ARG SEQRES 1 X 646 SER LYS LEU LYS ASP PRO GLU LEU SER LEU LYS GLY THR SEQRES 2 X 646 GLN HIS ILE MET GLN ALA GLY GLN THR LEU HIS LEU GLN SEQRES 3 X 646 CYS ARG GLY GLU ALA ALA HIS LYS TRP SER LEU PRO GLU SEQRES 4 X 646 MET VAL SER LYS GLU SER GLU ARG LEU SER ILE THR LYS SEQRES 5 X 646 SER ALA CYS GLY ARG ASN GLY LYS GLN PHE CYS SER THR SEQRES 6 X 646 LEU THR LEU ASN THR ALA GLN ALA ASN HIS THR GLY PHE SEQRES 7 X 646 TYR SER CYS LYS TYR LEU ALA VAL PRO THR SER LYS LYS SEQRES 8 X 646 LYS GLU THR GLU SER ALA ILE TYR ILE PHE ILE SER ASP SEQRES 9 X 646 THR GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO SEQRES 10 X 646 GLU ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE SEQRES 11 X 646 PRO CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU SEQRES 12 X 646 LYS LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS SEQRES 13 X 646 ARG ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER SEQRES 14 X 646 ASN ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU SEQRES 15 X 646 ALA THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU SEQRES 16 X 646 THR HIS ARG GLN THR ASN THR ILE ILE ASP VAL GLN ILE SEQRES 17 X 646 SER THR PRO ARG PRO VAL LYS LEU LEU ARG GLY HIS THR SEQRES 18 X 646 LEU VAL LEU ASN CYS THR ALA THR THR PRO LEU ASN THR SEQRES 19 X 646 ARG VAL GLN MET THR TRP SER TYR PRO ASP GLU LYS ASN SEQRES 20 X 646 LYS ARG ALA SER VAL ARG ARG ARG ILE ASP GLN SER ASN SEQRES 21 X 646 SER HIS ALA ASN ILE PHE TYR SER VAL LEU THR ILE ASP SEQRES 22 X 646 LYS MET GLN ASN LYS ASP LYS GLY LEU TYR THR CYS ARG SEQRES 23 X 646 VAL ARG SER GLY PRO SER PHE LYS SER VAL ASN THR SER SEQRES 24 X 646 VAL HIS ILE TYR ASP LYS ALA PHE ILE THR VAL LYS HIS SEQRES 25 X 646 ARG LYS GLN GLN VAL LEU GLU THR VAL ALA GLY LYS ARG SEQRES 26 X 646 SER TYR ARG LEU SER MET LYS VAL LYS ALA PHE PRO SER SEQRES 27 X 646 PRO GLU VAL VAL TRP LEU LYS ASP GLY LEU PRO ALA THR SEQRES 28 X 646 GLU LYS SER ALA ARG TYR LEU THR ARG GLY TYR SER LEU SEQRES 29 X 646 ILE ILE LYS ASP VAL THR GLU GLU ASP ALA GLY ASN TYR SEQRES 30 X 646 THR ILE LEU LEU SER ILE LYS GLN SER ASN VAL PHE LYS SEQRES 31 X 646 ASN LEU THR ALA THR LEU ILE VAL ASN VAL LYS PRO GLN SEQRES 32 X 646 ILE TYR GLU LYS ALA VAL SER SER PHE PRO ASP PRO ALA SEQRES 33 X 646 LEU TYR PRO LEU GLY SER ARG GLN ILE LEU THR CYS THR SEQRES 34 X 646 ALA TYR GLY ILE PRO GLN PRO THR ILE LYS TRP PHE TRP SEQRES 35 X 646 HIS PRO CYS ASN HIS ASN HIS SER GLU ALA ARG CYS ASP SEQRES 36 X 646 PHE CYS SER ASN ASN GLU GLU SER PHE ILE LEU ASP ALA SEQRES 37 X 646 ASP SER ASN MET GLY ASN ARG ILE GLU SER ILE THR GLN SEQRES 38 X 646 ARG MET ALA ILE ILE GLU GLY LYS ASN LYS MET ALA SER SEQRES 39 X 646 THR LEU VAL VAL ALA ASP SER ARG ILE SER GLY ILE TYR SEQRES 40 X 646 ILE CYS ILE ALA SER ASN LYS VAL GLY THR VAL GLY ARG SEQRES 41 X 646 ASN ILE SER PHE TYR ILE THR ASP VAL PRO ASN GLY PHE SEQRES 42 X 646 HIS VAL ASN LEU GLU LYS MET PRO THR GLU GLY GLU ASP SEQRES 43 X 646 LEU LYS LEU SER CYS THR VAL ASN LYS PHE LEU TYR ARG SEQRES 44 X 646 ASP VAL THR TRP ILE LEU LEU ARG THR VAL ASN ASN ARG SEQRES 45 X 646 THR MET HIS TYR SER ILE SER LYS GLN LYS MET ALA ILE SEQRES 46 X 646 THR LYS GLU HIS SER ILE THR LEU ASN LEU THR ILE MET SEQRES 47 X 646 ASN VAL SER LEU GLN ASP SER GLY THR TYR ALA CYS ARG SEQRES 48 X 646 ALA ARG ASN VAL TYR THR GLY GLU GLU ILE LEU GLN LYS SEQRES 49 X 646 LYS GLU ILE THR ILE ARG ASP GLN GLU ALA ILE GLU GLY SEQRES 50 X 646 ARG HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 Y 646 SER LYS LEU LYS ASP PRO GLU LEU SER LEU LYS GLY THR SEQRES 2 Y 646 GLN HIS ILE MET GLN ALA GLY GLN THR LEU HIS LEU GLN SEQRES 3 Y 646 CYS ARG GLY GLU ALA ALA HIS LYS TRP SER LEU PRO GLU SEQRES 4 Y 646 MET VAL SER LYS GLU SER GLU ARG LEU SER ILE THR LYS SEQRES 5 Y 646 SER ALA CYS GLY ARG ASN GLY LYS GLN PHE CYS SER THR SEQRES 6 Y 646 LEU THR LEU ASN THR ALA GLN ALA ASN HIS THR GLY PHE SEQRES 7 Y 646 TYR SER CYS LYS TYR LEU ALA VAL PRO THR SER LYS LYS SEQRES 8 Y 646 LYS GLU THR GLU SER ALA ILE TYR ILE PHE ILE SER ASP SEQRES 9 Y 646 THR GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO SEQRES 10 Y 646 GLU ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE SEQRES 11 Y 646 PRO CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU SEQRES 12 Y 646 LYS LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS SEQRES 13 Y 646 ARG ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER SEQRES 14 Y 646 ASN ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU SEQRES 15 Y 646 ALA THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU SEQRES 16 Y 646 THR HIS ARG GLN THR ASN THR ILE ILE ASP VAL GLN ILE SEQRES 17 Y 646 SER THR PRO ARG PRO VAL LYS LEU LEU ARG GLY HIS THR SEQRES 18 Y 646 LEU VAL LEU ASN CYS THR ALA THR THR PRO LEU ASN THR SEQRES 19 Y 646 ARG VAL GLN MET THR TRP SER TYR PRO ASP GLU LYS ASN SEQRES 20 Y 646 LYS ARG ALA SER VAL ARG ARG ARG ILE ASP GLN SER ASN SEQRES 21 Y 646 SER HIS ALA ASN ILE PHE TYR SER VAL LEU THR ILE ASP SEQRES 22 Y 646 LYS MET GLN ASN LYS ASP LYS GLY LEU TYR THR CYS ARG SEQRES 23 Y 646 VAL ARG SER GLY PRO SER PHE LYS SER VAL ASN THR SER SEQRES 24 Y 646 VAL HIS ILE TYR ASP LYS ALA PHE ILE THR VAL LYS HIS SEQRES 25 Y 646 ARG LYS GLN GLN VAL LEU GLU THR VAL ALA GLY LYS ARG SEQRES 26 Y 646 SER TYR ARG LEU SER MET LYS VAL LYS ALA PHE PRO SER SEQRES 27 Y 646 PRO GLU VAL VAL TRP LEU LYS ASP GLY LEU PRO ALA THR SEQRES 28 Y 646 GLU LYS SER ALA ARG TYR LEU THR ARG GLY TYR SER LEU SEQRES 29 Y 646 ILE ILE LYS ASP VAL THR GLU GLU ASP ALA GLY ASN TYR SEQRES 30 Y 646 THR ILE LEU LEU SER ILE LYS GLN SER ASN VAL PHE LYS SEQRES 31 Y 646 ASN LEU THR ALA THR LEU ILE VAL ASN VAL LYS PRO GLN SEQRES 32 Y 646 ILE TYR GLU LYS ALA VAL SER SER PHE PRO ASP PRO ALA SEQRES 33 Y 646 LEU TYR PRO LEU GLY SER ARG GLN ILE LEU THR CYS THR SEQRES 34 Y 646 ALA TYR GLY ILE PRO GLN PRO THR ILE LYS TRP PHE TRP SEQRES 35 Y 646 HIS PRO CYS ASN HIS ASN HIS SER GLU ALA ARG CYS ASP SEQRES 36 Y 646 PHE CYS SER ASN ASN GLU GLU SER PHE ILE LEU ASP ALA SEQRES 37 Y 646 ASP SER ASN MET GLY ASN ARG ILE GLU SER ILE THR GLN SEQRES 38 Y 646 ARG MET ALA ILE ILE GLU GLY LYS ASN LYS MET ALA SER SEQRES 39 Y 646 THR LEU VAL VAL ALA ASP SER ARG ILE SER GLY ILE TYR SEQRES 40 Y 646 ILE CYS ILE ALA SER ASN LYS VAL GLY THR VAL GLY ARG SEQRES 41 Y 646 ASN ILE SER PHE TYR ILE THR ASP VAL PRO ASN GLY PHE SEQRES 42 Y 646 HIS VAL ASN LEU GLU LYS MET PRO THR GLU GLY GLU ASP SEQRES 43 Y 646 LEU LYS LEU SER CYS THR VAL ASN LYS PHE LEU TYR ARG SEQRES 44 Y 646 ASP VAL THR TRP ILE LEU LEU ARG THR VAL ASN ASN ARG SEQRES 45 Y 646 THR MET HIS TYR SER ILE SER LYS GLN LYS MET ALA ILE SEQRES 46 Y 646 THR LYS GLU HIS SER ILE THR LEU ASN LEU THR ILE MET SEQRES 47 Y 646 ASN VAL SER LEU GLN ASP SER GLY THR TYR ALA CYS ARG SEQRES 48 Y 646 ALA ARG ASN VAL TYR THR GLY GLU GLU ILE LEU GLN LYS SEQRES 49 Y 646 LYS GLU ILE THR ILE ARG ASP GLN GLU ALA ILE GLU GLY SEQRES 50 Y 646 ARG HIS HIS HIS HIS HIS HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG V 201 14 HET NAG W 201 14 HET NAG X 703 14 HET NAG X 704 14 HET NAG X 705 14 HET NAG X 706 14 HET NAG X 707 14 HET NAG X 708 14 HET NAG X 709 14 HET NAG X 710 14 HET NAG Y 701 14 HET NAG Y 702 14 HET NAG Y 705 14 HET NAG Y 706 14 HET NAG Y 707 14 HET NAG Y 708 14 HET NAG Y 709 14 HET NAG Y 710 14 HET NAG Y 711 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 5 NAG 23(C8 H15 N O6) HELIX 1 AA1 LYS V 16 TYR V 25 1 10 HELIX 2 AA2 ILE V 35 TYR V 39 1 5 HELIX 3 AA3 LYS W 16 ARG W 23 1 8 HELIX 4 AA4 ILE W 35 TYR W 39 1 5 HELIX 5 AA5 VAL X 112 LYS X 116 5 5 HELIX 6 AA6 THR X 198 ILE X 202 5 5 HELIX 7 AA7 GLN X 302 LYS X 306 5 5 HELIX 8 AA8 THR X 396 ALA X 400 5 5 HELIX 9 AA9 GLU X 432 ALA X 434 5 3 HELIX 10 AB1 GLN Y 98 THR Y 102 5 5 HELIX 11 AB2 THR Y 198 ILE Y 202 5 5 HELIX 12 AB3 THR Y 396 ALA Y 400 5 5 HELIX 13 AB4 ILE Y 430 ALA Y 434 5 5 SHEET 1 AA1 2 HIS V 27 ASP V 34 0 SHEET 2 AA1 2 CYS V 51 GLY V 58 -1 O LEU V 54 N THR V 31 SHEET 1 AA2 3 ILE V 46 LYS V 48 0 SHEET 2 AA2 3 LEU V 66 ILE V 83 -1 O ILE V 83 N ILE V 46 SHEET 3 AA2 3 GLN V 89 PRO V 106 -1 O GLY V 92 N ILE V 80 SHEET 1 AA3 2 HIS W 27 ASP W 34 0 SHEET 2 AA3 2 CYS W 51 GLY W 58 -1 O LEU W 54 N THR W 31 SHEET 1 AA4 3 ILE W 46 LYS W 48 0 SHEET 2 AA4 3 LEU W 66 ILE W 83 -1 O MET W 81 N LYS W 48 SHEET 3 AA4 3 GLN W 89 PRO W 106 -1 O MET W 94 N MET W 78 SHEET 1 AA5 4 GLU X 33 LEU X 34 0 SHEET 2 AA5 4 HIS X 50 GLY X 55 -1 O ARG X 54 N GLU X 33 SHEET 3 AA5 4 PHE X 88 THR X 93 -1 O SER X 90 N CYS X 53 SHEET 4 AA5 4 ARG X 73 ILE X 76 -1 N ILE X 76 O CYS X 89 SHEET 1 AA6 3 LYS X 60 SER X 62 0 SHEET 2 AA6 3 GLY X 103 LYS X 108 -1 O LYS X 108 N LYS X 60 SHEET 3 AA6 3 GLU X 121 ILE X 126 -1 O ILE X 124 N TYR X 105 SHEET 1 AA7 5 GLU X 144 MET X 148 0 SHEET 2 AA7 5 HIS X 214 ARG X 224 1 O HIS X 223 N ILE X 146 SHEET 3 AA7 5 LEU X 204 VAL X 211 -1 N LEU X 205 O TYR X 220 SHEET 4 AA7 5 VAL X 167 LYS X 171 -1 N THR X 168 O GLU X 208 SHEET 5 AA7 5 ASP X 175 LEU X 177 -1 O ASP X 175 N LYS X 171 SHEET 1 AA8 3 LEU X 154 ILE X 156 0 SHEET 2 AA8 3 GLY X 191 ILE X 194 -1 O ILE X 194 N LEU X 154 SHEET 3 AA8 3 ILE X 184 ASP X 187 -1 N ASP X 187 O GLY X 191 SHEET 1 AA9 4 ASP X 231 SER X 235 0 SHEET 2 AA9 4 LEU X 248 THR X 256 -1 O THR X 253 N GLN X 233 SHEET 3 AA9 4 ASN X 290 ILE X 298 -1 O ASN X 290 N THR X 256 SHEET 4 AA9 4 ALA X 276 ILE X 282 -1 N SER X 277 O VAL X 295 SHEET 1 AB1 4 VAL X 240 LYS X 241 0 SHEET 2 AB1 4 PHE X 319 HIS X 327 1 O HIS X 327 N VAL X 240 SHEET 3 AB1 4 GLY X 307 ARG X 314 -1 N TYR X 309 O THR X 324 SHEET 4 AB1 4 MET X 264 SER X 267 -1 N THR X 265 O ARG X 312 SHEET 1 AB2 2 PHE X 333 VAL X 336 0 SHEET 2 AB2 2 VAL X 359 PHE X 362 -1 O LYS X 360 N THR X 335 SHEET 1 AB3 4 LEU X 344 VAL X 347 0 SHEET 2 AB3 4 VAL X 414 ASN X 425 1 O ASN X 425 N THR X 346 SHEET 3 AB3 4 GLY X 401 ILE X 409 -1 N TYR X 403 O ALA X 420 SHEET 4 AB3 4 GLU X 366 TRP X 369 -1 N GLU X 366 O SER X 408 SHEET 1 AB4 2 ARG X 351 SER X 356 0 SHEET 2 AB4 2 SER X 389 ASP X 394 -1 O LYS X 393 N SER X 352 SHEET 1 AB5 4 GLN X 429 ILE X 430 0 SHEET 2 AB5 4 CYS X 454 TYR X 457 -1 O TYR X 457 N GLN X 429 SHEET 3 AB5 4 LYS X 515 ASP X 526 -1 O SER X 520 N CYS X 454 SHEET 4 AB5 4 GLN X 450 ILE X 451 -1 N GLN X 450 O VAL X 524 SHEET 1 AB6 4 GLN X 429 ILE X 430 0 SHEET 2 AB6 4 CYS X 454 TYR X 457 -1 O TYR X 457 N GLN X 429 SHEET 3 AB6 4 LYS X 515 ASP X 526 -1 O SER X 520 N CYS X 454 SHEET 4 AB6 4 ARG X 501 ILE X 512 -1 N GLU X 503 O VAL X 523 SHEET 1 AB7 4 LEU X 443 TYR X 444 0 SHEET 2 AB7 4 THR X 543 ILE X 552 1 O TYR X 551 N TYR X 444 SHEET 3 AB7 4 GLY X 531 SER X 538 -1 N TYR X 533 O ILE X 548 SHEET 4 AB7 4 THR X 463 TRP X 466 -1 N LYS X 465 O ILE X 536 SHEET 1 AB8 3 HIS X 560 GLU X 564 0 SHEET 2 AB8 3 LEU X 573 VAL X 579 -1 O SER X 576 N ASN X 562 SHEET 3 AB8 3 ILE X 617 ILE X 623 -1 O LEU X 621 N LEU X 575 SHEET 1 AB9 3 THR X 588 LEU X 592 0 SHEET 2 AB9 3 GLY X 632 ALA X 638 -1 O ARG X 637 N THR X 588 SHEET 3 AB9 3 GLU X 646 LEU X 648 -1 O LEU X 648 N CYS X 636 SHEET 1 AC1 3 THR X 588 LEU X 592 0 SHEET 2 AC1 3 GLY X 632 ALA X 638 -1 O ARG X 637 N THR X 588 SHEET 3 AC1 3 LYS X 651 GLU X 652 -1 O GLU X 652 N GLY X 632 SHEET 1 AC2 4 GLU Y 33 LEU Y 34 0 SHEET 2 AC2 4 HIS Y 50 GLY Y 55 -1 O ARG Y 54 N GLU Y 33 SHEET 3 AC2 4 PHE Y 88 THR Y 93 -1 O SER Y 90 N CYS Y 53 SHEET 4 AC2 4 ARG Y 73 ILE Y 76 -1 N ILE Y 76 O CYS Y 89 SHEET 1 AC3 3 LYS Y 60 SER Y 62 0 SHEET 2 AC3 3 GLY Y 103 LYS Y 108 -1 O SER Y 106 N SER Y 62 SHEET 3 AC3 3 GLU Y 121 ILE Y 126 -1 O ILE Y 124 N TYR Y 105 SHEET 1 AC4 5 GLU Y 144 MET Y 148 0 SHEET 2 AC4 5 HIS Y 214 ARG Y 224 1 O LEU Y 221 N GLU Y 144 SHEET 3 AC4 5 LEU Y 204 VAL Y 211 -1 N LEU Y 205 O TYR Y 220 SHEET 4 AC4 5 VAL Y 167 LYS Y 171 -1 N LYS Y 170 O THR Y 206 SHEET 5 AC4 5 THR Y 176 LEU Y 177 -1 O LEU Y 177 N LEU Y 169 SHEET 1 AC5 3 LEU Y 154 ILE Y 156 0 SHEET 2 AC5 3 GLY Y 191 ILE Y 194 -1 O PHE Y 192 N ILE Y 156 SHEET 3 AC5 3 ILE Y 184 ASP Y 187 -1 N ILE Y 185 O ILE Y 193 SHEET 1 AC6 4 ASP Y 231 SER Y 235 0 SHEET 2 AC6 4 LEU Y 248 THR Y 256 -1 O THR Y 253 N GLN Y 233 SHEET 3 AC6 4 ASN Y 290 ILE Y 298 -1 O ASN Y 290 N THR Y 256 SHEET 4 AC6 4 ALA Y 276 ILE Y 282 -1 N ARG Y 281 O ILE Y 291 SHEET 1 AC7 4 VAL Y 240 LYS Y 241 0 SHEET 2 AC7 4 PHE Y 319 HIS Y 327 1 O HIS Y 327 N VAL Y 240 SHEET 3 AC7 4 GLY Y 307 ARG Y 314 -1 N CYS Y 311 O VAL Y 322 SHEET 4 AC7 4 GLN Y 263 SER Y 267 -1 N GLN Y 263 O ARG Y 314 SHEET 1 AC8 2 PHE Y 333 VAL Y 336 0 SHEET 2 AC8 2 VAL Y 359 PHE Y 362 -1 O LYS Y 360 N THR Y 335 SHEET 1 AC9 4 LEU Y 344 VAL Y 347 0 SHEET 2 AC9 4 VAL Y 414 ASN Y 425 1 O ILE Y 423 N LEU Y 344 SHEET 3 AC9 4 GLY Y 401 ILE Y 409 -1 N GLY Y 401 O LEU Y 422 SHEET 4 AC9 4 GLU Y 366 TRP Y 369 -1 N GLU Y 366 O SER Y 408 SHEET 1 AD1 2 ARG Y 351 SER Y 356 0 SHEET 2 AD1 2 SER Y 389 ASP Y 394 -1 O LYS Y 393 N SER Y 352 SHEET 1 AD2 3 GLN Y 450 ALA Y 456 0 SHEET 2 AD2 3 LYS Y 515 ASP Y 526 -1 O LEU Y 522 N LEU Y 452 SHEET 3 AD2 3 ARG Y 501 ILE Y 512 -1 N ARG Y 501 O ALA Y 525 SHEET 1 AD3 3 ILE Y 464 TRP Y 466 0 SHEET 2 AD3 3 GLY Y 531 ASN Y 539 -1 O ILE Y 536 N LYS Y 465 SHEET 3 AD3 3 GLY Y 542 PHE Y 550 -1 O VAL Y 544 N ALA Y 537 SHEET 1 AD4 3 HIS Y 560 GLU Y 564 0 SHEET 2 AD4 3 LEU Y 573 VAL Y 579 -1 O SER Y 576 N ASN Y 562 SHEET 3 AD4 3 ILE Y 617 ILE Y 623 -1 O LEU Y 619 N CYS Y 577 SHEET 1 AD5 3 ARG Y 585 LEU Y 591 0 SHEET 2 AD5 3 THR Y 633 ARG Y 639 -1 O ALA Y 635 N ILE Y 590 SHEET 3 AD5 3 ILE Y 647 LYS Y 651 -1 O LEU Y 648 N CYS Y 636 SSBOND 1 CYS V 26 CYS V 68 1555 1555 2.04 SSBOND 2 CYS V 51 CYS W 60 1555 1555 2.03 SSBOND 3 CYS V 57 CYS V 102 1555 1555 2.03 SSBOND 4 CYS V 60 CYS W 51 1555 1555 2.03 SSBOND 5 CYS V 61 CYS V 104 1555 1555 2.03 SSBOND 6 CYS W 26 CYS W 68 1555 1555 2.03 SSBOND 7 CYS W 57 CYS W 102 1555 1555 2.03 SSBOND 8 CYS W 61 CYS W 104 1555 1555 2.03 SSBOND 9 CYS X 53 CYS X 107 1555 1555 2.04 SSBOND 10 CYS X 158 CYS X 207 1555 1555 2.03 SSBOND 11 CYS X 252 CYS X 311 1555 1555 2.03 SSBOND 12 CYS X 454 CYS X 535 1555 1555 2.04 SSBOND 13 CYS X 577 CYS X 636 1555 1555 2.03 SSBOND 14 CYS Y 53 CYS Y 107 1555 1555 2.03 SSBOND 15 CYS Y 158 CYS Y 207 1555 1555 2.03 SSBOND 16 CYS Y 252 CYS Y 311 1555 1555 2.03 SSBOND 17 CYS Y 454 CYS Y 535 1555 1555 2.03 SSBOND 18 CYS Y 577 CYS Y 636 1555 1555 2.03 LINK ND2 ASN V 75 C1 NAG V 201 1555 1555 1.45 LINK ND2 ASN W 75 C1 NAG W 201 1555 1555 1.45 LINK ND2 ASN X 100 C1 NAG A 1 1555 1555 1.44 LINK CE1 HIS X 101 O7 NAG A 1 1555 1555 1.38 LINK ND2 ASN X 196 C1 NAG X 703 1555 1555 1.44 LINK ND2 ASN X 251 C1 NAG X 704 1555 1555 1.44 LINK ND2 ASN X 323 C1 NAG X 705 1555 1555 1.45 LINK ND2 ASN X 402 C1 NAG X 706 1555 1555 1.45 LINK ND2 ASN X 417 C1 NAG X 707 1555 1555 1.44 LINK ND2 ASN X 547 C1 NAG X 708 1555 1555 1.44 LINK ND2 ASN X 625 C1 NAG X 709 1555 1555 1.45 LINK ND2 ASN Y 100 C1 NAG Y 701 1555 1555 1.44 LINK ND2 ASN Y 164 C1 NAG Y 702 1555 1555 1.44 LINK ND2 ASN Y 196 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN Y 251 C1 NAG Y 705 1555 1555 1.44 LINK ND2 ASN Y 323 C1 NAG Y 706 1555 1555 1.44 LINK ND2 ASN Y 402 C1 NAG Y 707 1555 1555 1.45 LINK ND2 ASN Y 417 C1 NAG Y 708 1555 1555 1.44 LINK ND2 ASN Y 547 C1 NAG Y 709 1555 1555 1.45 LINK ND2 ASN Y 625 C1 NAG Y 710 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 CISPEP 1 LYS V 48 PRO V 49 0 1.39 CISPEP 2 LYS W 48 PRO W 49 0 -2.40 CISPEP 3 PHE X 172 PRO X 173 0 -2.61 CISPEP 4 SER X 235 THR X 236 0 1.06 CISPEP 5 GLN X 341 GLN X 342 0 0.07 CISPEP 6 PHE X 362 PRO X 363 0 1.48 CISPEP 7 GLY X 373 LEU X 374 0 -10.44 CISPEP 8 PRO X 375 ALA X 376 0 -5.81 CISPEP 9 ALA X 376 THR X 377 0 -9.30 CISPEP 10 ILE X 459 PRO X 460 0 -4.03 CISPEP 11 ASP X 495 SER X 496 0 1.37 CISPEP 12 ASN X 497 MET X 498 0 -5.70 CISPEP 13 SER X 603 ILE X 604 0 18.63 CISPEP 14 ILE X 604 SER X 605 0 -12.22 CISPEP 15 MET X 609 ALA X 610 0 -6.78 CISPEP 16 GLU X 614 HIS X 615 0 3.62 CISPEP 17 THR X 643 GLY X 644 0 18.98 CISPEP 18 GLY Y 132 ARG Y 133 0 1.13 CISPEP 19 PHE Y 172 PRO Y 173 0 1.63 CISPEP 20 SER Y 235 THR Y 236 0 -1.16 CISPEP 21 GLN Y 341 GLN Y 342 0 3.27 CISPEP 22 PHE Y 362 PRO Y 363 0 2.12 CISPEP 23 GLY Y 373 LEU Y 374 0 -10.84 CISPEP 24 PRO Y 375 ALA Y 376 0 -1.18 CISPEP 25 ALA Y 376 THR Y 377 0 -10.46 CISPEP 26 PRO Y 439 ASP Y 440 0 0.86 CISPEP 27 ILE Y 459 PRO Y 460 0 -3.11 CISPEP 28 ASP Y 495 SER Y 496 0 1.51 CISPEP 29 ASN Y 497 MET Y 498 0 -8.73 CISPEP 30 SER Y 603 ILE Y 604 0 4.33 CISPEP 31 ILE Y 604 SER Y 605 0 -19.72 CISPEP 32 GLN Y 607 LYS Y 608 0 10.39 CISPEP 33 GLU Y 614 HIS Y 615 0 -1.69 CRYST1 166.710 123.090 167.370 90.00 109.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005998 0.000000 0.002132 0.00000 SCALE2 0.000000 0.008124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006341 0.00000