HEADER TRANSFERASE 08-SEP-16 5T8T TITLE CRYSTAL STRUCTURE OF A S-ADENOSYLMETHIONINE SYNTHASE FROM NEISSERIA TITLE 2 GONORRHOEAE WITH BOUND AMP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NEGOA.00040.A.B1; COMPND 5 SYNONYM: ADOMET SYNTHASE,MAT,METHIONINE ADENOSYLTRANSFERASE; COMPND 6 EC: 2.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE (STRAIN ATCC 700825 / FA SOURCE 3 1090); SOURCE 4 ORGANISM_TAXID: 242231; SOURCE 5 STRAIN: ATCC 700825 / FA 1090; SOURCE 6 GENE: METK, NGO0106; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: NEGOA.00040.A.B1 KEYWDS SSGCID, S-ADENOSYLMETHIONINE SYNTHASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5T8T 1 REMARK REVDAT 2 05-OCT-16 5T8T 1 REMARK REVDAT 1 28-SEP-16 5T8T 0 JRNL AUTH D.M.DRANOW,S.L.DELKER,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A S-ADENOSYLMETHIONINE SYNTHASE FROM JRNL TITL 2 NEISSERIA GONORRHOEAE WITH BOUND AMP AND MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2499: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 58889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5123 - 5.1767 0.97 3973 155 0.1737 0.2121 REMARK 3 2 5.1767 - 4.1098 0.99 3854 150 0.1407 0.1780 REMARK 3 3 4.1098 - 3.5905 0.99 3799 154 0.1482 0.1798 REMARK 3 4 3.5905 - 3.2623 1.00 3815 132 0.1743 0.1997 REMARK 3 5 3.2623 - 3.0286 1.00 3810 130 0.1819 0.2135 REMARK 3 6 3.0286 - 2.8500 1.00 3770 131 0.1828 0.1952 REMARK 3 7 2.8500 - 2.7073 1.00 3792 124 0.1750 0.2157 REMARK 3 8 2.7073 - 2.5895 1.00 3765 136 0.1712 0.2229 REMARK 3 9 2.5895 - 2.4898 1.00 3769 132 0.1714 0.2134 REMARK 3 10 2.4898 - 2.4039 1.00 3764 140 0.1732 0.2343 REMARK 3 11 2.4039 - 2.3287 1.00 3726 146 0.1758 0.2122 REMARK 3 12 2.3287 - 2.2622 1.00 3731 148 0.1908 0.2051 REMARK 3 13 2.2622 - 2.2026 1.00 3753 112 0.1935 0.2382 REMARK 3 14 2.2026 - 2.1489 1.00 3750 142 0.2085 0.2910 REMARK 3 15 2.1489 - 2.1000 1.00 3751 135 0.2181 0.2405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5813 REMARK 3 ANGLE : 0.800 7927 REMARK 3 CHIRALITY : 0.052 913 REMARK 3 PLANARITY : 0.006 1037 REMARK 3 DIHEDRAL : 15.802 3505 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7784 -23.9143 8.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.2331 REMARK 3 T33: 0.2218 T12: -0.0093 REMARK 3 T13: 0.0101 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.3485 L22: 2.0512 REMARK 3 L33: 3.1206 L12: -0.0852 REMARK 3 L13: -0.3403 L23: -0.8154 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0300 S13: -0.0729 REMARK 3 S21: -0.0293 S22: -0.0438 S23: -0.0003 REMARK 3 S31: 0.3575 S32: 0.1027 S33: 0.0466 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2907 -5.9878 -2.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.2633 REMARK 3 T33: 0.2703 T12: 0.0239 REMARK 3 T13: 0.0574 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.7088 L22: 1.5033 REMARK 3 L33: 1.4544 L12: 0.9278 REMARK 3 L13: 0.1422 L23: 0.4163 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1223 S13: 0.2268 REMARK 3 S21: -0.1025 S22: 0.0686 S23: 0.0732 REMARK 3 S31: -0.1034 S32: 0.0782 S33: -0.0782 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0887 -26.5786 -13.2932 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.3515 REMARK 3 T33: 0.2477 T12: 0.0334 REMARK 3 T13: 0.0632 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.2977 L22: 1.6399 REMARK 3 L33: 2.4334 L12: 0.2288 REMARK 3 L13: -0.3987 L23: 0.2647 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: 0.2705 S13: -0.1219 REMARK 3 S21: -0.3065 S22: 0.1166 S23: -0.2360 REMARK 3 S31: 0.3305 S32: 0.4235 S33: 0.0224 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9311 -17.8382 0.8988 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1779 REMARK 3 T33: 0.1764 T12: -0.0623 REMARK 3 T13: -0.0127 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.5879 L22: 1.4945 REMARK 3 L33: 2.1051 L12: -0.2432 REMARK 3 L13: -0.6245 L23: -0.0795 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: 0.2128 S13: 0.0648 REMARK 3 S21: -0.0234 S22: -0.0048 S23: 0.0725 REMARK 3 S31: -0.1105 S32: -0.1374 S33: -0.0585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3176 -28.4179 7.7334 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2181 REMARK 3 T33: 0.2367 T12: -0.0722 REMARK 3 T13: -0.0095 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 6.3842 L22: 5.3365 REMARK 3 L33: 7.3003 L12: 2.7053 REMARK 3 L13: -0.2403 L23: 3.9484 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.0533 S13: -0.5715 REMARK 3 S21: 0.3577 S22: -0.0318 S23: 0.1923 REMARK 3 S31: 0.8439 S32: -0.2631 S33: 0.0646 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1918 -15.9448 -8.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.2892 REMARK 3 T33: 0.2461 T12: 0.0055 REMARK 3 T13: -0.0182 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.7760 L22: 1.3885 REMARK 3 L33: 2.2458 L12: -0.0859 REMARK 3 L13: -0.3775 L23: -0.5093 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.3070 S13: 0.1903 REMARK 3 S21: -0.2150 S22: 0.0292 S23: -0.0343 REMARK 3 S31: -0.2680 S32: -0.0692 S33: -0.0335 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4912 -36.2512 -14.8382 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.2824 REMARK 3 T33: 0.2688 T12: -0.0612 REMARK 3 T13: -0.0070 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 2.2534 L22: 2.1278 REMARK 3 L33: 2.0009 L12: 0.4948 REMARK 3 L13: 0.1518 L23: 0.8701 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: 0.3681 S13: -0.3153 REMARK 3 S21: -0.1757 S22: 0.0929 S23: 0.0085 REMARK 3 S31: 0.4256 S32: 0.0780 S33: 0.0022 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8089 -6.2383 -15.0768 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.3427 REMARK 3 T33: 0.3240 T12: -0.0188 REMARK 3 T13: 0.0422 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 0.9805 L22: 2.1404 REMARK 3 L33: 3.2992 L12: -0.8551 REMARK 3 L13: -0.1850 L23: -0.3336 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: 0.3056 S13: 0.3730 REMARK 3 S21: -0.4410 S22: -0.0069 S23: -0.1282 REMARK 3 S31: -0.4466 S32: -0.1807 S33: -0.1182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5T8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NEGOA.00040.A.B1.PW37902 AT 20.8 REMARK 280 MG/ML, MIXED 1:1 WITH AN EQUAL VOLUME MORPHEUS(B9): 10% (W/V) REMARK 280 PEG-20000, 20% (V/V) PEG MME 550, 0.1 M BICINE/TRIZMA BASE, PH = REMARK 280 8.5, 0.03 M EACH NAF, NABR, NAI, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.40000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.20000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.80000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.20000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 524 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 VAL A 107 REMARK 465 ASN A 108 REMARK 465 GLU A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 ILE A 113 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 102 REMARK 465 ILE B 103 REMARK 465 ALA B 104 REMARK 465 GLN B 105 REMARK 465 GLY B 106 REMARK 465 VAL B 107 REMARK 465 ASN B 108 REMARK 465 GLU B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 ILE B 113 REMARK 465 LEU B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 SER A 81 OG REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 GLN A 347 CG CD OE1 NE2 REMARK 470 LEU A 389 CG CD1 CD2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 GLN B 99 CG CD OE1 NE2 REMARK 470 SER B 100 OG REMARK 470 SER B 177 OG REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 ILE B 325 CG1 CG2 CD1 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 LYS B 329 CG CD CE NZ REMARK 470 SER B 382 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P AMP B 401 O HOH B 501 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 244 CB CYS A 244 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 255 -99.25 -119.28 REMARK 500 ARG B 234 135.85 -177.54 REMARK 500 THR B 255 -102.01 -119.84 REMARK 500 GLU B 368 55.90 -99.26 REMARK 500 THR B 377 38.56 -91.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 17 OD2 REMARK 620 2 AMP B 401 O2P 72.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NEGOA.00040.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5T8S RELATED DB: PDB DBREF 5T8T A 1 389 UNP Q5FAC0 METK_NEIG1 1 389 DBREF 5T8T B 1 389 UNP Q5FAC0 METK_NEIG1 1 389 SEQADV 5T8T MET A -7 UNP Q5FAC0 INITIATING METHIONINE SEQADV 5T8T ALA A -6 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A -5 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A -4 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A -3 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A -2 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A -1 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS A 0 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T MET B -7 UNP Q5FAC0 INITIATING METHIONINE SEQADV 5T8T ALA B -6 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B -5 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B -4 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B -3 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B -2 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B -1 UNP Q5FAC0 EXPRESSION TAG SEQADV 5T8T HIS B 0 UNP Q5FAC0 EXPRESSION TAG SEQRES 1 A 397 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLU TYR LEU SEQRES 2 A 397 PHE THR SER GLU SER VAL SER GLU GLY HIS PRO ASP LYS SEQRES 3 A 397 VAL ALA ASP GLN VAL SER ASP ALA ILE LEU ASP ALA ILE SEQRES 4 A 397 LEU ALA GLN ASP PRO LYS ALA ARG VAL ALA ALA GLU THR SEQRES 5 A 397 LEU VAL ASN THR GLY LEU CYS VAL LEU ALA GLY GLU ILE SEQRES 6 A 397 THR THR THR ALA GLN VAL ASP TYR ILE LYS VAL ALA ARG SEQRES 7 A 397 GLU THR ILE LYS ARG ILE GLY TYR ASN SER SER GLU LEU SEQRES 8 A 397 GLY PHE ASP ALA ASN GLY CYS ALA VAL GLY VAL TYR TYR SEQRES 9 A 397 ASP GLN GLN SER PRO ASP ILE ALA GLN GLY VAL ASN GLU SEQRES 10 A 397 GLY GLU GLY ILE ASP LEU ASN GLN GLY ALA GLY ASP GLN SEQRES 11 A 397 GLY LEU MET PHE GLY TYR ALA CYS ASP GLU THR PRO THR SEQRES 12 A 397 LEU MET PRO PHE ALA ILE TYR TYR SER HIS ARG LEU MET SEQRES 13 A 397 GLN ARG GLN SER GLU LEU ARG LYS ASP GLY ARG LEU PRO SEQRES 14 A 397 TRP LEU ARG PRO ASP ALA LYS ALA GLN LEU THR VAL VAL SEQRES 15 A 397 TYR ASP SER GLU THR GLY LYS VAL LYS ARG ILE ASP THR SEQRES 16 A 397 VAL VAL LEU SER THR GLN HIS ASP PRO ALA ILE SER GLN SEQRES 17 A 397 GLU GLU LEU SER LYS ALA VAL ILE GLU GLN ILE ILE LYS SEQRES 18 A 397 PRO VAL LEU PRO PRO GLU LEU LEU THR ASP GLU THR LYS SEQRES 19 A 397 TYR LEU ILE ASN PRO THR GLY ARG PHE VAL ILE GLY GLY SEQRES 20 A 397 PRO GLN GLY ASP CYS GLY LEU THR GLY ARG LYS ILE ILE SEQRES 21 A 397 VAL ASP THR TYR GLY GLY ALA ALA PRO HIS GLY GLY GLY SEQRES 22 A 397 ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SER SEQRES 23 A 397 ALA ALA TYR ALA CYS ARG TYR VAL ALA LYS ASN ILE VAL SEQRES 24 A 397 ALA ALA GLY LEU ALA THR GLN CYS GLN ILE GLN VAL SER SEQRES 25 A 397 TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE SER ILE SEQRES 26 A 397 ASP THR PHE GLY THR GLY LYS ILE SER GLU GLU LYS LEU SEQRES 27 A 397 ILE ALA LEU VAL CYS GLU HIS PHE ASP LEU ARG PRO LYS SEQRES 28 A 397 GLY ILE VAL GLN MET LEU ASP LEU LEU ARG PRO ILE TYR SEQRES 29 A 397 GLY LYS SER ALA ALA TYR GLY HIS PHE GLY ARG GLU GLU SEQRES 30 A 397 PRO GLU PHE THR TRP GLU ARG THR ASP LYS ALA ALA SER SEQRES 31 A 397 LEU LYS ALA ALA ALA GLY LEU SEQRES 1 B 397 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLU TYR LEU SEQRES 2 B 397 PHE THR SER GLU SER VAL SER GLU GLY HIS PRO ASP LYS SEQRES 3 B 397 VAL ALA ASP GLN VAL SER ASP ALA ILE LEU ASP ALA ILE SEQRES 4 B 397 LEU ALA GLN ASP PRO LYS ALA ARG VAL ALA ALA GLU THR SEQRES 5 B 397 LEU VAL ASN THR GLY LEU CYS VAL LEU ALA GLY GLU ILE SEQRES 6 B 397 THR THR THR ALA GLN VAL ASP TYR ILE LYS VAL ALA ARG SEQRES 7 B 397 GLU THR ILE LYS ARG ILE GLY TYR ASN SER SER GLU LEU SEQRES 8 B 397 GLY PHE ASP ALA ASN GLY CYS ALA VAL GLY VAL TYR TYR SEQRES 9 B 397 ASP GLN GLN SER PRO ASP ILE ALA GLN GLY VAL ASN GLU SEQRES 10 B 397 GLY GLU GLY ILE ASP LEU ASN GLN GLY ALA GLY ASP GLN SEQRES 11 B 397 GLY LEU MET PHE GLY TYR ALA CYS ASP GLU THR PRO THR SEQRES 12 B 397 LEU MET PRO PHE ALA ILE TYR TYR SER HIS ARG LEU MET SEQRES 13 B 397 GLN ARG GLN SER GLU LEU ARG LYS ASP GLY ARG LEU PRO SEQRES 14 B 397 TRP LEU ARG PRO ASP ALA LYS ALA GLN LEU THR VAL VAL SEQRES 15 B 397 TYR ASP SER GLU THR GLY LYS VAL LYS ARG ILE ASP THR SEQRES 16 B 397 VAL VAL LEU SER THR GLN HIS ASP PRO ALA ILE SER GLN SEQRES 17 B 397 GLU GLU LEU SER LYS ALA VAL ILE GLU GLN ILE ILE LYS SEQRES 18 B 397 PRO VAL LEU PRO PRO GLU LEU LEU THR ASP GLU THR LYS SEQRES 19 B 397 TYR LEU ILE ASN PRO THR GLY ARG PHE VAL ILE GLY GLY SEQRES 20 B 397 PRO GLN GLY ASP CYS GLY LEU THR GLY ARG LYS ILE ILE SEQRES 21 B 397 VAL ASP THR TYR GLY GLY ALA ALA PRO HIS GLY GLY GLY SEQRES 22 B 397 ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SER SEQRES 23 B 397 ALA ALA TYR ALA CYS ARG TYR VAL ALA LYS ASN ILE VAL SEQRES 24 B 397 ALA ALA GLY LEU ALA THR GLN CYS GLN ILE GLN VAL SER SEQRES 25 B 397 TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE SER ILE SEQRES 26 B 397 ASP THR PHE GLY THR GLY LYS ILE SER GLU GLU LYS LEU SEQRES 27 B 397 ILE ALA LEU VAL CYS GLU HIS PHE ASP LEU ARG PRO LYS SEQRES 28 B 397 GLY ILE VAL GLN MET LEU ASP LEU LEU ARG PRO ILE TYR SEQRES 29 B 397 GLY LYS SER ALA ALA TYR GLY HIS PHE GLY ARG GLU GLU SEQRES 30 B 397 PRO GLU PHE THR TRP GLU ARG THR ASP LYS ALA ALA SER SEQRES 31 B 397 LEU LYS ALA ALA ALA GLY LEU HET AMP B 401 23 HET MG B 402 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 MG MG 2+ FORMUL 5 HOH *378(H2 O) HELIX 1 AA1 HIS A 15 ASP A 35 1 21 HELIX 2 AA2 ASP A 64 GLY A 77 1 14 HELIX 3 AA3 SER A 80 GLY A 84 5 5 HELIX 4 AA4 ASP A 86 CYS A 90 5 5 HELIX 5 AA5 PRO A 138 ASP A 157 1 20 HELIX 6 AA6 SER A 199 ILE A 211 1 13 HELIX 7 AA7 PRO A 217 LEU A 221 5 5 HELIX 8 AA8 LYS A 274 ALA A 293 1 20 HELIX 9 AA9 SER A 326 PHE A 338 1 13 HELIX 10 AB1 ARG A 341 ASP A 350 1 10 HELIX 11 AB2 TYR A 356 ALA A 361 5 6 HELIX 12 AB3 PHE A 372 ARG A 376 5 5 HELIX 13 AB4 LYS A 379 ALA A 387 1 9 HELIX 14 AB5 HIS B 15 ASP B 35 1 21 HELIX 15 AB6 ASP B 64 GLY B 77 1 14 HELIX 16 AB7 SER B 80 GLY B 84 5 5 HELIX 17 AB8 PRO B 138 ASP B 157 1 20 HELIX 18 AB9 SER B 199 ILE B 211 1 13 HELIX 19 AC1 ILE B 211 LEU B 216 1 6 HELIX 20 AC2 PRO B 217 LEU B 221 5 5 HELIX 21 AC3 GLY B 238 ASP B 243 1 6 HELIX 22 AC4 LYS B 274 ALA B 293 1 20 HELIX 23 AC5 SER B 326 PHE B 338 1 13 HELIX 24 AC6 ARG B 341 ASP B 350 1 10 HELIX 25 AC7 TYR B 356 ALA B 361 5 6 HELIX 26 AC8 PHE B 372 ARG B 376 5 5 HELIX 27 AC9 LYS B 379 GLY B 388 1 10 SHEET 1 AA1 4 GLU A 3 VAL A 11 0 SHEET 2 AA1 4 LEU A 163 ASP A 176 -1 O VAL A 173 N PHE A 6 SHEET 3 AA1 4 VAL A 182 HIS A 194 -1 O LYS A 183 N VAL A 174 SHEET 4 AA1 4 LYS A 226 ILE A 229 1 O LEU A 228 N VAL A 188 SHEET 1 AA2 4 ALA A 91 VAL A 94 0 SHEET 2 AA2 4 LEU A 50 THR A 58 1 N LEU A 53 O GLY A 93 SHEET 3 AA2 4 ARG A 39 ASN A 47 -1 N GLU A 43 O ALA A 54 SHEET 4 AA2 4 GLY A 245 LEU A 246 -1 O GLY A 245 N VAL A 46 SHEET 1 AA3 3 GLY A 123 CYS A 130 0 SHEET 2 AA3 3 GLN A 298 TYR A 305 -1 O CYS A 299 N ALA A 129 SHEET 3 AA3 3 SER A 314 ASP A 318 -1 O ASP A 318 N GLN A 300 SHEET 1 AA4 4 GLU B 3 VAL B 11 0 SHEET 2 AA4 4 LEU B 163 ASP B 176 -1 O VAL B 173 N PHE B 6 SHEET 3 AA4 4 VAL B 182 HIS B 194 -1 O LYS B 183 N VAL B 174 SHEET 4 AA4 4 LYS B 226 ILE B 229 1 O LYS B 226 N VAL B 188 SHEET 1 AA5 3 ALA B 91 VAL B 94 0 SHEET 2 AA5 3 LEU B 50 THR B 58 1 N LEU B 53 O GLY B 93 SHEET 3 AA5 3 ASP B 97 GLN B 99 1 O ASP B 97 N GLY B 55 SHEET 1 AA6 4 ALA B 91 VAL B 94 0 SHEET 2 AA6 4 LEU B 50 THR B 58 1 N LEU B 53 O GLY B 93 SHEET 3 AA6 4 ARG B 39 ASN B 47 -1 N GLU B 43 O ALA B 54 SHEET 4 AA6 4 GLY B 245 LEU B 246 -1 O GLY B 245 N VAL B 46 SHEET 1 AA7 3 GLY B 123 CYS B 130 0 SHEET 2 AA7 3 GLN B 298 TYR B 305 -1 O CYS B 299 N ALA B 129 SHEET 3 AA7 3 SER B 314 ASP B 318 -1 O SER B 314 N SER B 304 LINK OD2 ASP B 17 MG MG B 402 1555 1555 2.06 LINK O2P AMP B 401 MG MG B 402 1555 1555 2.69 SITE 1 AC1 22 ASP A 102 ILE A 103 ASP A 121 HOH A 473 SITE 2 AC1 22 HIS B 15 PRO B 16 ASP B 17 ASP B 166 SITE 3 AC1 22 LYS B 168 SER B 191 THR B 232 ARG B 234 SITE 4 AC1 22 PHE B 235 ASP B 243 LYS B 250 MG B 402 SITE 5 AC1 22 HOH B 501 HOH B 503 HOH B 516 HOH B 558 SITE 6 AC1 22 HOH B 560 HOH B 643 SITE 1 AC2 4 ASP B 17 ARG B 249 LYS B 250 AMP B 401 CRYST1 116.580 116.580 145.600 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006868 0.00000