HEADER LIGASE 08-SEP-16 5T8U TITLE CRYSTAL STRUCTURE OF P. FALCIPARUM LIPL1 IN COMPLEX LIPOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOATE-PROTEIN LIGASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.63; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_1314600; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMALCHT KEYWDS LIPOYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.GUERRA,G.A.AFANADOR,S.T.PRIGGE REVDAT 6 04-OCT-23 5T8U 1 REMARK REVDAT 5 11-DEC-19 5T8U 1 REMARK REVDAT 4 20-SEP-17 5T8U 1 REMARK REVDAT 3 06-SEP-17 5T8U 1 JRNL REVDAT 2 07-JUN-17 5T8U 1 JRNL REVDAT 1 31-MAY-17 5T8U 0 JRNL AUTH A.J.GUERRA,G.A.AFANADOR,S.T.PRIGGE JRNL TITL CRYSTAL STRUCTURE OF LIPOATE-BOUND LIPOATE LIGASE 1, LIPL1, JRNL TITL 2 FROM PLASMODIUM FALCIPARUM. JRNL REF PROTEINS V. 85 1777 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28543853 JRNL DOI 10.1002/PROT.25324 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2558: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 47306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5847 - 5.8528 1.00 3055 188 0.2038 0.2305 REMARK 3 2 5.8528 - 4.6467 1.00 2955 162 0.1943 0.2191 REMARK 3 3 4.6467 - 4.0597 1.00 2951 140 0.1851 0.2348 REMARK 3 4 4.0597 - 3.6886 0.97 2864 142 0.2576 0.2977 REMARK 3 5 3.6886 - 3.4243 0.97 2832 120 0.2957 0.3611 REMARK 3 6 3.4243 - 3.2225 1.00 2890 158 0.3067 0.3183 REMARK 3 7 3.2225 - 3.0611 1.00 2881 151 0.3153 0.3451 REMARK 3 8 3.0611 - 2.9279 0.99 2864 180 0.3177 0.3445 REMARK 3 9 2.9279 - 2.8152 1.00 2869 145 0.3357 0.3805 REMARK 3 10 2.8152 - 2.7180 1.00 2918 160 0.3575 0.3826 REMARK 3 11 2.7180 - 2.6331 0.69 1982 96 0.5667 0.6439 REMARK 3 12 2.6331 - 2.5578 1.00 2830 159 0.4232 0.4617 REMARK 3 13 2.5578 - 2.4905 1.00 2931 133 0.4217 0.4263 REMARK 3 14 2.4905 - 2.4297 0.99 2876 116 0.4207 0.4395 REMARK 3 15 2.4297 - 2.3745 1.00 2848 152 0.4282 0.4409 REMARK 3 16 2.3745 - 2.3239 0.85 2451 107 0.5236 0.4548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5628 REMARK 3 ANGLE : 0.469 7628 REMARK 3 CHIRALITY : 0.041 850 REMARK 3 PLANARITY : 0.002 984 REMARK 3 DIHEDRAL : 13.067 3303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.0744 683.7757 297.2713 REMARK 3 T TENSOR REMARK 3 T11: 0.4797 T22: 0.7208 REMARK 3 T33: 0.3685 T12: -0.0527 REMARK 3 T13: 0.0222 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.4349 L22: 2.6457 REMARK 3 L33: 2.5506 L12: 0.1074 REMARK 3 L13: -0.4892 L23: 0.7945 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: 0.0068 S13: -0.2274 REMARK 3 S21: 0.0557 S22: 0.0465 S23: 0.0117 REMARK 3 S31: 0.0309 S32: 0.2359 S33: 0.0259 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.5886 685.2889 279.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.9642 REMARK 3 T33: 0.4980 T12: -0.0351 REMARK 3 T13: -0.0644 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.1360 L22: 1.5637 REMARK 3 L33: 5.5795 L12: 0.0148 REMARK 3 L13: -1.0458 L23: -0.4123 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.7139 S13: -0.0966 REMARK 3 S21: -0.3590 S22: -0.0298 S23: 0.2900 REMARK 3 S31: 0.1091 S32: -0.6168 S33: 0.1468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.8746 688.1774 270.4220 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.7049 REMARK 3 T33: 0.3401 T12: -0.0402 REMARK 3 T13: 0.0128 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 3.2410 L22: 3.8162 REMARK 3 L33: 0.8603 L12: 1.0914 REMARK 3 L13: -0.1682 L23: -0.6616 REMARK 3 S TENSOR REMARK 3 S11: 0.1324 S12: 0.0388 S13: 0.0445 REMARK 3 S21: 0.0766 S22: -0.0817 S23: -0.1044 REMARK 3 S31: -0.1103 S32: 0.1226 S33: -0.0448 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.1307 698.5947 276.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.6457 T22: 0.7066 REMARK 3 T33: 0.3767 T12: -0.0090 REMARK 3 T13: -0.0325 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.8297 L22: 2.5381 REMARK 3 L33: 1.4608 L12: -0.1469 REMARK 3 L13: -0.2556 L23: 1.3483 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.0610 S13: 0.0596 REMARK 3 S21: 0.0016 S22: -0.0553 S23: -0.0041 REMARK 3 S31: -0.3539 S32: 0.0799 S33: 0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127085 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48667 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.324 REMARK 200 RESOLUTION RANGE LOW (A) : 48.574 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.13910 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 20% ETHYLENE REMARK 280 GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.94667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.97333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.97333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 GLU A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 194 REMARK 465 ASP A 195 REMARK 465 LYS A 196 REMARK 465 ILE A 197 REMARK 465 LYS A 198 REMARK 465 TYR A 199 REMARK 465 ILE A 200 REMARK 465 LYS A 201 REMARK 465 HIS A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 VAL A 207 REMARK 465 ASN A 208 REMARK 465 ALA A 209 REMARK 465 ARG A 210 REMARK 465 GLY B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 GLU B 18 REMARK 465 LEU B 19 REMARK 465 ASN B 20 REMARK 465 LYS B 201 REMARK 465 HIS B 202 REMARK 465 GLY B 203 REMARK 465 VAL B 204 REMARK 465 SER B 205 REMARK 465 SER B 206 REMARK 465 VAL B 207 REMARK 465 ASN B 208 REMARK 465 TYR B 242 REMARK 465 ASN B 243 REMARK 465 THR B 244 REMARK 465 ASN B 245 REMARK 465 ILE B 246 REMARK 465 ILE B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 LYS B 287 CG CD CE NZ REMARK 470 LYS B 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 233 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 58 -62.36 -109.46 REMARK 500 ASN A 62 13.56 -147.68 REMARK 500 ILE A 77 -74.99 -88.28 REMARK 500 LYS A 170 -58.04 -27.07 REMARK 500 ILE A 181 -70.86 -104.19 REMARK 500 ASN A 220 38.43 -98.91 REMARK 500 PRO A 286 128.84 -36.39 REMARK 500 LYS A 313 -81.10 -70.83 REMARK 500 ASN B 45 40.12 -107.01 REMARK 500 THR B 57 158.00 -47.35 REMARK 500 ASN B 62 37.12 -140.66 REMARK 500 ASN B 126 31.93 -140.51 REMARK 500 GLN B 149 -71.06 -93.66 REMARK 500 ASN B 152 15.53 -146.26 REMARK 500 ASP B 158 19.67 57.47 REMARK 500 ILE B 169 -167.14 -129.09 REMARK 500 ILE B 181 -61.30 -109.58 REMARK 500 GLN B 240 67.43 -66.79 REMARK 500 ASN B 309 -113.17 63.46 REMARK 500 LYS B 313 -77.90 -84.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LPA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LPA B 401 DBREF 5T8U A 20 370 UNP Q8IEG9 Q8IEG9_PLAF7 20 407 DBREF 5T8U B 20 370 UNP Q8IEG9 Q8IEG9_PLAF7 20 407 SEQADV 5T8U GLY A 11 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 12 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 13 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 14 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 15 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 16 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS A 17 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U GLU A 18 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U LEU A 19 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U A UNP Q8IEG9 LYS 243 DELETION SEQADV 5T8U A UNP Q8IEG9 GLU 244 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 245 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 246 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 247 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 248 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 249 DELETION SEQADV 5T8U A UNP Q8IEG9 LYS 250 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 251 DELETION SEQADV 5T8U A UNP Q8IEG9 LEU 252 DELETION SEQADV 5T8U A UNP Q8IEG9 GLU 253 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 254 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 255 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 256 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 257 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 258 DELETION SEQADV 5T8U A UNP Q8IEG9 SER 259 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 260 DELETION SEQADV 5T8U A UNP Q8IEG9 PHE 261 DELETION SEQADV 5T8U A UNP Q8IEG9 GLN 262 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 263 DELETION SEQADV 5T8U A UNP Q8IEG9 LYS 264 DELETION SEQADV 5T8U A UNP Q8IEG9 GLU 265 DELETION SEQADV 5T8U A UNP Q8IEG9 GLN 266 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 267 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 268 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 269 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 270 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 271 DELETION SEQADV 5T8U A UNP Q8IEG9 THR 272 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 273 DELETION SEQADV 5T8U A UNP Q8IEG9 GLU 274 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 275 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 276 DELETION SEQADV 5T8U A UNP Q8IEG9 LEU 277 DELETION SEQADV 5T8U A UNP Q8IEG9 ILE 278 DELETION SEQADV 5T8U A UNP Q8IEG9 ASN 279 DELETION SEQADV 5T8U GLY B 11 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 12 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 13 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 14 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 15 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 16 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U HIS B 17 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U GLU B 18 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U LEU B 19 UNP Q8IEG9 EXPRESSION TAG SEQADV 5T8U B UNP Q8IEG9 LYS 243 DELETION SEQADV 5T8U B UNP Q8IEG9 GLU 244 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 245 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 246 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 247 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 248 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 249 DELETION SEQADV 5T8U B UNP Q8IEG9 LYS 250 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 251 DELETION SEQADV 5T8U B UNP Q8IEG9 LEU 252 DELETION SEQADV 5T8U B UNP Q8IEG9 GLU 253 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 254 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 255 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 256 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 257 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 258 DELETION SEQADV 5T8U B UNP Q8IEG9 SER 259 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 260 DELETION SEQADV 5T8U B UNP Q8IEG9 PHE 261 DELETION SEQADV 5T8U B UNP Q8IEG9 GLN 262 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 263 DELETION SEQADV 5T8U B UNP Q8IEG9 LYS 264 DELETION SEQADV 5T8U B UNP Q8IEG9 GLU 265 DELETION SEQADV 5T8U B UNP Q8IEG9 GLN 266 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 267 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 268 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 269 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 270 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 271 DELETION SEQADV 5T8U B UNP Q8IEG9 THR 272 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 273 DELETION SEQADV 5T8U B UNP Q8IEG9 GLU 274 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 275 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 276 DELETION SEQADV 5T8U B UNP Q8IEG9 LEU 277 DELETION SEQADV 5T8U B UNP Q8IEG9 ILE 278 DELETION SEQADV 5T8U B UNP Q8IEG9 ASN 279 DELETION SEQRES 1 A 360 GLY HIS HIS HIS HIS HIS HIS GLU LEU ASN GLY PRO LEU SEQRES 2 A 360 VAL LEU VAL SER ASN ASN GLN ASN ILE HIS PHE ASN LEU SEQRES 3 A 360 SER LEU GLU ASN PHE LEU LEU ASN ASN TYR ASN ASP LEU SEQRES 4 A 360 LEU LYS TYR LEU ASN ILE ASN THR ILE GLU LYS PHE ASN SEQRES 5 A 360 GLU PRO ILE LEU PHE LEU TRP ARG ASN ASN ARG SER ILE SEQRES 6 A 360 ILE ILE GLY LYS ASN GLN ASN ILE TRP SER GLU CYS ASN SEQRES 7 A 360 LEU LYS ASN ILE LYS GLU ASP GLY VAL LEU VAL ALA ARG SEQRES 8 A 360 ARG PHE THR GLY GLY GLY ALA VAL TYR HIS ASP LEU GLY SEQRES 9 A 360 ASN VAL CYS PHE THR PHE LEU ASN ASN ASN ILE ASN THR SEQRES 10 A 360 SER SER ASN PHE LEU ILE ILE LEU ASN THR LEU LYS ASN SEQRES 11 A 360 HIS PHE ASN ILE GLU ALA LYS THR GLN GLY ARG ASN ASP SEQRES 12 A 360 ILE THR VAL ASN ASP GLN LYS CYS SER GLY SER ALA PHE SEQRES 13 A 360 LYS LYS ILE LYS ASP VAL PHE LEU HIS HIS GLY THR ILE SEQRES 14 A 360 LEU ILE ASN LEU GLU LYS ASN ILE LEU ASN LYS TYR LEU SEQRES 15 A 360 THR PRO ASP LYS ILE LYS TYR ILE LYS HIS GLY VAL SER SEQRES 16 A 360 SER VAL ASN ALA ARG THR ILE ASN LEU SER GLU ILE ASN SEQRES 17 A 360 ASN ASN ILE THR CYS GLU ASN LEU CYS ILE ALA LEU ILE SEQRES 18 A 360 LYS GLU PHE THR LYS PHE TYR GLU GLN ASN TYR ASN THR SEQRES 19 A 360 ASN ILE ILE PRO ASN ASP ILE THR VAL HIS TYR ILE ASP SEQRES 20 A 360 GLN ASN ASN ASN ILE THR LYS ASN PRO GLU PHE LEU LYS SEQRES 21 A 360 TYR TYR ASN LEU LEU LYS ASP TRP ASP TRP CYS TYR GLY SEQRES 22 A 360 LYS THR PRO LYS PHE GLN ASN HIS ILE TRP LYS GLN PHE SEQRES 23 A 360 THR PHE GLY LYS LEU GLU LEU PHE PHE ASN VAL SER ASN SEQRES 24 A 360 GLY PHE ILE LYS ASP GLY ASN ILE PHE SER ASP CYS LEU SEQRES 25 A 360 ASP ILE ASN LEU ILE ASP HIS LEU LYS SER ILE PHE ASN SEQRES 26 A 360 ASN ASP ILE LYS TYR SER LYS GLU ASP ILE SER ILE PHE SEQRES 27 A 360 PHE LYS LYS LEU ASN VAL GLU ASN LYS ASN TYR LEU ASP SEQRES 28 A 360 GLU VAL ARG SER TRP ILE LEU GLN GLU SEQRES 1 B 360 GLY HIS HIS HIS HIS HIS HIS GLU LEU ASN GLY PRO LEU SEQRES 2 B 360 VAL LEU VAL SER ASN ASN GLN ASN ILE HIS PHE ASN LEU SEQRES 3 B 360 SER LEU GLU ASN PHE LEU LEU ASN ASN TYR ASN ASP LEU SEQRES 4 B 360 LEU LYS TYR LEU ASN ILE ASN THR ILE GLU LYS PHE ASN SEQRES 5 B 360 GLU PRO ILE LEU PHE LEU TRP ARG ASN ASN ARG SER ILE SEQRES 6 B 360 ILE ILE GLY LYS ASN GLN ASN ILE TRP SER GLU CYS ASN SEQRES 7 B 360 LEU LYS ASN ILE LYS GLU ASP GLY VAL LEU VAL ALA ARG SEQRES 8 B 360 ARG PHE THR GLY GLY GLY ALA VAL TYR HIS ASP LEU GLY SEQRES 9 B 360 ASN VAL CYS PHE THR PHE LEU ASN ASN ASN ILE ASN THR SEQRES 10 B 360 SER SER ASN PHE LEU ILE ILE LEU ASN THR LEU LYS ASN SEQRES 11 B 360 HIS PHE ASN ILE GLU ALA LYS THR GLN GLY ARG ASN ASP SEQRES 12 B 360 ILE THR VAL ASN ASP GLN LYS CYS SER GLY SER ALA PHE SEQRES 13 B 360 LYS LYS ILE LYS ASP VAL PHE LEU HIS HIS GLY THR ILE SEQRES 14 B 360 LEU ILE ASN LEU GLU LYS ASN ILE LEU ASN LYS TYR LEU SEQRES 15 B 360 THR PRO ASP LYS ILE LYS TYR ILE LYS HIS GLY VAL SER SEQRES 16 B 360 SER VAL ASN ALA ARG THR ILE ASN LEU SER GLU ILE ASN SEQRES 17 B 360 ASN ASN ILE THR CYS GLU ASN LEU CYS ILE ALA LEU ILE SEQRES 18 B 360 LYS GLU PHE THR LYS PHE TYR GLU GLN ASN TYR ASN THR SEQRES 19 B 360 ASN ILE ILE PRO ASN ASP ILE THR VAL HIS TYR ILE ASP SEQRES 20 B 360 GLN ASN ASN ASN ILE THR LYS ASN PRO GLU PHE LEU LYS SEQRES 21 B 360 TYR TYR ASN LEU LEU LYS ASP TRP ASP TRP CYS TYR GLY SEQRES 22 B 360 LYS THR PRO LYS PHE GLN ASN HIS ILE TRP LYS GLN PHE SEQRES 23 B 360 THR PHE GLY LYS LEU GLU LEU PHE PHE ASN VAL SER ASN SEQRES 24 B 360 GLY PHE ILE LYS ASP GLY ASN ILE PHE SER ASP CYS LEU SEQRES 25 B 360 ASP ILE ASN LEU ILE ASP HIS LEU LYS SER ILE PHE ASN SEQRES 26 B 360 ASN ASP ILE LYS TYR SER LYS GLU ASP ILE SER ILE PHE SEQRES 27 B 360 PHE LYS LYS LEU ASN VAL GLU ASN LYS ASN TYR LEU ASP SEQRES 28 B 360 GLU VAL ARG SER TRP ILE LEU GLN GLU HET LPA A 401 25 HET LPA B 401 25 HETNAM LPA LIPOIC ACID HETSYN LPA 5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOIC ACID FORMUL 3 LPA 2(C8 H14 O2 S2) FORMUL 5 HOH *84(H2 O) HELIX 1 AA1 ASN A 31 ASN A 45 1 15 HELIX 2 AA2 ASP A 48 LEU A 53 1 6 HELIX 3 AA3 ASN A 82 CYS A 87 1 6 HELIX 4 AA4 ASN A 88 ASP A 95 1 8 HELIX 5 AA5 ASN A 126 ASN A 143 1 18 HELIX 6 AA6 ILE A 187 LEU A 192 1 6 HELIX 7 AA7 THR A 222 TYR A 238 1 17 HELIX 8 AA8 ASN A 259 LYS A 264 1 6 HELIX 9 AA9 ASN A 265 ASP A 277 1 13 HELIX 10 AB1 ASP A 277 TYR A 282 1 6 HELIX 11 AB2 ASP A 323 SER A 332 1 10 HELIX 12 AB3 SER A 341 LEU A 352 1 12 HELIX 13 AB4 ASN A 356 LEU A 368 1 13 HELIX 14 AB5 ASN B 31 ASN B 45 1 15 HELIX 15 AB6 ASP B 48 LEU B 53 1 6 HELIX 16 AB7 ASN B 82 CYS B 87 1 6 HELIX 17 AB8 ASN B 88 ASP B 95 1 8 HELIX 18 AB9 ASN B 126 ASN B 143 1 18 HELIX 19 AC1 ILE B 187 LEU B 192 5 6 HELIX 20 AC2 ASN B 213 ASN B 218 1 6 HELIX 21 AC3 THR B 222 TYR B 238 1 17 HELIX 22 AC4 ASN B 259 LYS B 264 1 6 HELIX 23 AC5 ASN B 265 LYS B 276 1 12 HELIX 24 AC6 ASP B 277 TYR B 282 1 6 HELIX 25 AC7 ASP B 323 LYS B 331 1 9 HELIX 26 AC8 SER B 332 PHE B 334 5 3 HELIX 27 AC9 SER B 341 LEU B 352 1 12 HELIX 28 AD1 ASN B 356 GLN B 369 1 14 SHEET 1 AA1 8 LYS A 147 THR A 148 0 SHEET 2 AA1 8 ASP A 153 THR A 155 -1 O THR A 155 N LYS A 147 SHEET 3 AA1 8 LYS A 160 ILE A 169 -1 O CYS A 161 N ILE A 154 SHEET 4 AA1 8 VAL A 172 LEU A 180 -1 O LEU A 174 N LYS A 167 SHEET 5 AA1 8 ASN A 115 ASN A 122 -1 N PHE A 120 O HIS A 175 SHEET 6 AA1 8 ILE A 65 TRP A 69 -1 N ILE A 65 O LEU A 121 SHEET 7 AA1 8 LEU A 23 SER A 27 1 N LEU A 25 O LEU A 66 SHEET 8 AA1 8 HIS A 254 TYR A 255 1 O HIS A 254 N VAL A 24 SHEET 1 AA2 3 LEU A 98 ALA A 100 0 SHEET 2 AA2 3 SER A 74 ILE A 76 1 N ILE A 75 O ALA A 100 SHEET 3 AA2 3 VAL A 109 HIS A 111 -1 O VAL A 109 N ILE A 76 SHEET 1 AA3 3 ASN A 290 PHE A 296 0 SHEET 2 AA3 3 GLY A 299 VAL A 307 -1 O PHE A 305 N ASN A 290 SHEET 3 AA3 3 ILE A 312 SER A 319 -1 O ASN A 316 N PHE A 304 SHEET 1 AA4 8 LYS B 147 THR B 148 0 SHEET 2 AA4 8 ASP B 153 THR B 155 -1 O THR B 155 N LYS B 147 SHEET 3 AA4 8 LYS B 160 LYS B 168 -1 O CYS B 161 N ILE B 154 SHEET 4 AA4 8 PHE B 173 LEU B 180 -1 O LEU B 174 N LYS B 167 SHEET 5 AA4 8 ASN B 115 ASN B 122 -1 N PHE B 118 O GLY B 177 SHEET 6 AA4 8 ILE B 65 TRP B 69 -1 N ILE B 65 O LEU B 121 SHEET 7 AA4 8 LEU B 23 SER B 27 1 N LEU B 25 O LEU B 66 SHEET 8 AA4 8 HIS B 254 TYR B 255 1 O HIS B 254 N VAL B 24 SHEET 1 AA5 3 LEU B 98 ARG B 101 0 SHEET 2 AA5 3 SER B 74 ILE B 77 1 N ILE B 75 O ALA B 100 SHEET 3 AA5 3 VAL B 109 HIS B 111 -1 O HIS B 111 N SER B 74 SHEET 1 AA6 3 ASN B 290 PHE B 296 0 SHEET 2 AA6 3 GLY B 299 SER B 308 -1 O PHE B 305 N ASN B 290 SHEET 3 AA6 3 PHE B 311 SER B 319 -1 O ASN B 316 N PHE B 304 SITE 1 AC1 11 ARG A 102 GLY A 107 VAL A 109 HIS A 111 SITE 2 AC1 11 ASN A 152 LYS A 160 GLY A 163 SER A 164 SITE 3 AC1 11 HIS A 176 GLY A 177 THR A 178 SITE 1 AC2 8 TRP B 69 ARG B 102 HIS B 111 ASN B 152 SITE 2 AC2 8 LYS B 160 GLY B 163 HIS B 176 GLY B 177 CRYST1 120.240 120.240 134.920 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008317 0.004802 0.000000 0.00000 SCALE2 0.000000 0.009603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007412 0.00000