HEADER IMMUNE SYSTEM 09-SEP-16 5T93 TITLE IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN AL-T05 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALT-05 IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN FROM COMPND 3 LIGHT CHAIN AMYLOIDOSIS PATIENT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LAST RESIDUE WAS NOT VISIBLE ON ELECTRON DENSITY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGLV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET12A KEYWDS IMMUNOGLOBULIN LIGHT CHAIN, AMYLOID, LIGHT CHAIN AMYLOIDOSIS, KEYWDS 2 VARIABLE DOMAIN, ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.RAMIREZ-ALVARADO,L.M.BLANCAS-MEJIA REVDAT 6 04-OCT-23 5T93 1 LINK REVDAT 5 25-DEC-19 5T93 1 REMARK REVDAT 4 22-AUG-18 5T93 1 JRNL REVDAT 3 07-MAR-18 5T93 1 REMARK REVDAT 2 20-SEP-17 5T93 1 REMARK REVDAT 1 13-SEP-17 5T93 0 JRNL AUTH L.M.BLANCAS-MEJIA,P.MISRA,M.RAMIREZ-ALVARADO JRNL TITL DIFFERENCES IN PROTEIN CONCENTRATION DEPENDENCE FOR JRNL TITL 2 NUCLEATION AND ELONGATION IN LIGHT CHAIN AMYLOID FORMATION. JRNL REF BIOCHEMISTRY V. 56 757 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28074646 JRNL DOI 10.1021/ACS.BIOCHEM.6B01043 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 24891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.220 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4313 - 3.0156 0.94 6481 150 0.1684 0.2185 REMARK 3 2 3.0156 - 2.3937 0.94 6506 160 0.1856 0.2087 REMARK 3 3 2.3937 - 2.0912 0.93 6444 140 0.1578 0.2548 REMARK 3 4 2.0912 - 1.9000 0.71 4907 103 0.1692 0.2393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3442 REMARK 3 ANGLE : 1.103 4721 REMARK 3 CHIRALITY : 0.064 530 REMARK 3 PLANARITY : 0.007 620 REMARK 3 DIHEDRAL : 9.344 2030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5241 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07310 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07310 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE 0.1 M SODIUM REMARK 280 CACODYLATE 30% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 GLN A 1 O HOH A 303 1.46 REMARK 500 HG SER C 57 O HOH C 303 1.55 REMARK 500 O SER B 26 HD21 ASN B 31 1.56 REMARK 500 HD1 HIS B 39 OXT ACT B 202 1.57 REMARK 500 HD21 ASN A 31 O HOH A 311 1.59 REMARK 500 O HOH A 302 O HOH A 322 1.78 REMARK 500 O HOH C 398 O HOH C 400 1.78 REMARK 500 OD2 ASP B 61 O HOH B 301 1.92 REMARK 500 O HOH C 406 O HOH C 429 1.95 REMARK 500 O ACT A 202 O HOH A 301 1.95 REMARK 500 O HOH C 355 O HOH C 398 1.98 REMARK 500 O HOH C 371 O HOH C 418 2.01 REMARK 500 OE2 GLU A 84 O HOH A 302 2.04 REMARK 500 O HOH A 381 O HOH A 404 2.06 REMARK 500 O HOH B 359 O HOH B 391 2.06 REMARK 500 O HOH B 369 O HOH B 385 2.07 REMARK 500 O HOH D 370 O HOH D 404 2.07 REMARK 500 O HOH A 369 O HOH A 404 2.09 REMARK 500 O HOH B 319 O HOH B 400 2.11 REMARK 500 O HOH C 374 O HOH C 405 2.11 REMARK 500 O HOH C 377 O HOH C 396 2.11 REMARK 500 O HOH C 354 O HOH C 411 2.12 REMARK 500 O HOH B 377 O HOH C 349 2.14 REMARK 500 O HOH B 374 O HOH B 389 2.14 REMARK 500 OE1 GLN D 16 O HOH D 301 2.15 REMARK 500 O HOH D 302 O HOH D 308 2.15 REMARK 500 OE2 GLU D 84 O HOH D 302 2.15 REMARK 500 O HOH B 362 O HOH D 423 2.18 REMARK 500 O HOH C 354 O HOH C 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE22 GLN A 1 OG1 THR B 5 1554 1.52 REMARK 500 O HOH B 325 O HOH D 393 1465 2.02 REMARK 500 O HOH B 363 O HOH D 393 1465 2.03 REMARK 500 NE2 GLN A 1 OG1 THR B 5 1554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -89.70 -112.98 REMARK 500 ASN A 52 -43.43 78.98 REMARK 500 PRO A 56 150.70 -47.19 REMARK 500 ALA A 85 167.13 173.77 REMARK 500 SER A 97 67.90 35.21 REMARK 500 ASN B 28 -91.73 -112.06 REMARK 500 ASN B 52 -48.07 75.94 REMARK 500 ASP B 61 3.76 -67.88 REMARK 500 ALA B 85 172.60 179.67 REMARK 500 ASN C 28 -93.05 -115.48 REMARK 500 ASN C 52 -51.20 81.59 REMARK 500 ALA C 85 173.56 179.42 REMARK 500 ASN D 28 -97.86 -110.04 REMARK 500 ASN D 52 -45.14 75.74 REMARK 500 ASN D 53 8.61 -150.97 REMARK 500 ALA D 85 166.64 171.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 ACT A 202 O 63.1 REMARK 620 3 ACT A 203 O 127.1 164.1 REMARK 620 4 ACT A 203 OXT 100.7 141.6 53.1 REMARK 620 5 HOH A 301 O 84.7 62.0 126.8 83.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 302 O REMARK 620 2 HOH A 322 O 47.3 REMARK 620 3 HOH A 325 O 73.0 76.9 REMARK 620 4 ASP C 86 OD2 136.6 93.1 82.4 REMARK 620 5 HOH C 413 O 122.6 159.8 119.5 100.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 ND1 REMARK 620 2 ACT B 202 OXT 65.2 REMARK 620 3 ACT B 204 OXT 128.0 155.4 REMARK 620 4 HOH B 332 O 97.4 78.2 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 86 OD2 REMARK 620 2 ACT B 205 O 82.1 REMARK 620 3 ACT B 205 OXT 127.5 58.7 REMARK 620 4 HOH D 302 O 133.4 136.5 98.5 REMARK 620 5 HOH D 308 O 90.5 95.5 123.9 65.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 351 O REMARK 620 2 ASP D 51 OD1 109.0 REMARK 620 3 HOH D 364 O 128.7 91.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 39 ND1 REMARK 620 2 ACT C 202 O 62.8 REMARK 620 3 ACT C 203 O 95.7 74.9 REMARK 620 4 ACT C 205 O 151.6 133.3 110.6 REMARK 620 5 ACT C 205 OXT 119.7 147.2 72.4 62.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 39 ND1 REMARK 620 2 ACT D 202 OXT 94.1 REMARK 620 3 ACT D 202 O 61.7 63.5 REMARK 620 4 ACT D 203 OXT 119.5 108.1 171.4 REMARK 620 5 ACT D 203 O 97.4 162.0 134.4 54.1 REMARK 620 6 HOH D 328 O 97.3 123.0 73.9 113.6 69.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 204 DBREF 5T93 A 1 110 PDB 5T93 5T93 1 110 DBREF 5T93 B 1 110 PDB 5T93 5T93 1 110 DBREF 5T93 C 1 110 PDB 5T93 5T93 1 110 DBREF 5T93 D 1 110 PDB 5T93 5T93 1 110 SEQRES 1 A 110 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 A 110 PRO GLY GLN THR VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 A 110 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN HIS SEQRES 4 A 110 LEU PRO GLY THR ALA PRO LYS PHE LEU ILE TYR ASP ASN SEQRES 5 A 110 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 A 110 PHE LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 A 110 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 A 110 TRP ASP SER SER LEU SER ALA LEU VAL PHE GLY GLY GLY SEQRES 9 A 110 THR LYS LEU THR VAL LEU SEQRES 1 B 110 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 B 110 PRO GLY GLN THR VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 B 110 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN HIS SEQRES 4 B 110 LEU PRO GLY THR ALA PRO LYS PHE LEU ILE TYR ASP ASN SEQRES 5 B 110 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 110 PHE LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 B 110 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 B 110 TRP ASP SER SER LEU SER ALA LEU VAL PHE GLY GLY GLY SEQRES 9 B 110 THR LYS LEU THR VAL LEU SEQRES 1 C 110 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 C 110 PRO GLY GLN THR VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 C 110 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN HIS SEQRES 4 C 110 LEU PRO GLY THR ALA PRO LYS PHE LEU ILE TYR ASP ASN SEQRES 5 C 110 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 C 110 PHE LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 C 110 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 C 110 TRP ASP SER SER LEU SER ALA LEU VAL PHE GLY GLY GLY SEQRES 9 C 110 THR LYS LEU THR VAL LEU SEQRES 1 D 110 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 D 110 PRO GLY GLN THR VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 D 110 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN HIS SEQRES 4 D 110 LEU PRO GLY THR ALA PRO LYS PHE LEU ILE TYR ASP ASN SEQRES 5 D 110 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 D 110 PHE LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 D 110 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 D 110 TRP ASP SER SER LEU SER ALA LEU VAL PHE GLY GLY GLY SEQRES 9 D 110 THR LYS LEU THR VAL LEU HET ZN A 201 1 HET ACT A 202 7 HET ACT A 203 7 HET ZN B 201 1 HET ACT B 202 7 HET ZN B 203 1 HET ACT B 204 7 HET ACT B 205 7 HET ZN C 201 1 HET ACT C 202 7 HET ACT C 203 7 HET ZN C 204 1 HET ACT C 205 7 HET ZN D 201 1 HET ACT D 202 7 HET ACT D 203 7 HET ZN D 204 1 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 5 ZN 7(ZN 2+) FORMUL 6 ACT 10(C2 H3 O2 1-) FORMUL 22 HOH *482(H2 O) HELIX 1 AA1 GLN A 80 GLU A 84 5 5 HELIX 2 AA2 GLN B 80 GLU B 84 5 5 HELIX 3 AA3 GLN C 80 GLU C 84 5 5 HELIX 4 AA4 GLN D 80 GLU D 84 5 5 SHEET 1 AA1 5 SER A 9 ALA A 12 0 SHEET 2 AA1 5 THR A 105 VAL A 109 1 O THR A 108 N VAL A 10 SHEET 3 AA1 5 ALA A 85 ASP A 93 -1 N TYR A 87 O THR A 105 SHEET 4 AA1 5 SER A 35 HIS A 39 -1 N TYR A 37 O TYR A 88 SHEET 5 AA1 5 LYS A 46 ILE A 49 -1 O LEU A 48 N TRP A 36 SHEET 1 AA2 4 SER A 9 ALA A 12 0 SHEET 2 AA2 4 THR A 105 VAL A 109 1 O THR A 108 N VAL A 10 SHEET 3 AA2 4 ALA A 85 ASP A 93 -1 N TYR A 87 O THR A 105 SHEET 4 AA2 4 ALA A 98 PHE A 101 -1 O VAL A 100 N THR A 91 SHEET 1 AA3 3 VAL A 18 SER A 23 0 SHEET 2 AA3 3 SER A 71 ILE A 76 -1 O ILE A 76 N VAL A 18 SHEET 3 AA3 3 PHE A 63 SER A 68 -1 N PHE A 66 O THR A 73 SHEET 1 AA4 5 SER B 9 ALA B 12 0 SHEET 2 AA4 5 THR B 105 VAL B 109 1 O LYS B 106 N VAL B 10 SHEET 3 AA4 5 ALA B 85 ASP B 93 -1 N ALA B 85 O LEU B 107 SHEET 4 AA4 5 VAL B 34 HIS B 39 -1 N TYR B 37 O TYR B 88 SHEET 5 AA4 5 LYS B 46 ILE B 49 -1 O LEU B 48 N TRP B 36 SHEET 1 AA5 4 SER B 9 ALA B 12 0 SHEET 2 AA5 4 THR B 105 VAL B 109 1 O LYS B 106 N VAL B 10 SHEET 3 AA5 4 ALA B 85 ASP B 93 -1 N ALA B 85 O LEU B 107 SHEET 4 AA5 4 ALA B 98 PHE B 101 -1 O VAL B 100 N THR B 91 SHEET 1 AA6 3 VAL B 18 SER B 23 0 SHEET 2 AA6 3 SER B 71 ILE B 76 -1 O ALA B 72 N CYS B 22 SHEET 3 AA6 3 PHE B 63 SER B 68 -1 N SER B 64 O GLY B 75 SHEET 1 AA7 5 SER C 9 ALA C 12 0 SHEET 2 AA7 5 THR C 105 VAL C 109 1 O LYS C 106 N VAL C 10 SHEET 3 AA7 5 ALA C 85 ASP C 93 -1 N ALA C 85 O LEU C 107 SHEET 4 AA7 5 VAL C 34 HIS C 39 -1 N TYR C 37 O TYR C 88 SHEET 5 AA7 5 LYS C 46 ILE C 49 -1 O LEU C 48 N TRP C 36 SHEET 1 AA8 4 SER C 9 ALA C 12 0 SHEET 2 AA8 4 THR C 105 VAL C 109 1 O LYS C 106 N VAL C 10 SHEET 3 AA8 4 ALA C 85 ASP C 93 -1 N ALA C 85 O LEU C 107 SHEET 4 AA8 4 ALA C 98 PHE C 101 -1 O VAL C 100 N THR C 91 SHEET 1 AA9 3 VAL C 18 SER C 23 0 SHEET 2 AA9 3 SER C 71 ILE C 76 -1 O ALA C 72 N CYS C 22 SHEET 3 AA9 3 PHE C 63 SER C 68 -1 N SER C 64 O GLY C 75 SHEET 1 AB1 5 SER D 9 ALA D 12 0 SHEET 2 AB1 5 THR D 105 VAL D 109 1 O THR D 108 N VAL D 10 SHEET 3 AB1 5 ALA D 85 ASP D 93 -1 N TYR D 87 O THR D 105 SHEET 4 AB1 5 SER D 35 HIS D 39 -1 N TYR D 37 O TYR D 88 SHEET 5 AB1 5 LYS D 46 ILE D 49 -1 O LEU D 48 N TRP D 36 SHEET 1 AB2 4 SER D 9 ALA D 12 0 SHEET 2 AB2 4 THR D 105 VAL D 109 1 O THR D 108 N VAL D 10 SHEET 3 AB2 4 ALA D 85 ASP D 93 -1 N TYR D 87 O THR D 105 SHEET 4 AB2 4 ALA D 98 PHE D 101 -1 O VAL D 100 N THR D 91 SHEET 1 AB3 3 VAL D 18 SER D 23 0 SHEET 2 AB3 3 SER D 71 ILE D 76 -1 O LEU D 74 N ILE D 20 SHEET 3 AB3 3 PHE D 63 SER D 68 -1 N SER D 64 O GLY D 75 SSBOND 1 CYS A 22 CYS A 89 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 89 1555 1555 2.02 SSBOND 3 CYS C 22 CYS C 89 1555 1555 2.06 SSBOND 4 CYS D 22 CYS D 89 1555 1555 2.04 LINK ND1 HIS A 39 ZN ZN A 201 1555 1555 2.35 LINK ZN ZN A 201 O ACT A 202 1555 1555 1.78 LINK ZN ZN A 201 O ACT A 203 1555 1555 2.32 LINK ZN ZN A 201 OXT ACT A 203 1555 1555 2.36 LINK ZN ZN A 201 O HOH A 301 1555 1555 1.99 LINK O HOH A 302 ZN ZN C 204 1655 1555 2.13 LINK O HOH A 322 ZN ZN C 204 1655 1555 2.30 LINK O HOH A 325 ZN ZN C 204 1655 1555 2.25 LINK ND1 HIS B 39 ZN ZN B 201 1555 1555 2.41 LINK OD2 ASP B 86 ZN ZN B 203 1555 1555 2.38 LINK ZN ZN B 201 OXT ACT B 202 1555 1555 1.87 LINK ZN ZN B 201 OXT ACT B 204 1555 1555 2.35 LINK ZN ZN B 201 O HOH B 332 1555 1555 2.38 LINK ZN ZN B 203 O ACT B 205 1555 1555 1.99 LINK ZN ZN B 203 OXT ACT B 205 1555 1555 2.32 LINK ZN ZN B 203 O HOH D 302 1555 1455 1.83 LINK ZN ZN B 203 O HOH D 308 1555 1455 2.12 LINK O BHOH B 351 ZN ZN D 204 1555 1555 2.00 LINK ND1 HIS C 39 ZN ZN C 201 1555 1555 2.26 LINK OD2 ASP C 86 ZN ZN C 204 1555 1555 2.47 LINK ZN ZN C 201 O ACT C 202 1555 1555 2.15 LINK ZN ZN C 201 O ACT C 203 1555 1555 2.36 LINK ZN ZN C 201 O ACT C 205 1555 1555 2.22 LINK ZN ZN C 201 OXT ACT C 205 1555 1555 1.88 LINK ZN ZN C 204 O HOH C 413 1555 1555 2.52 LINK ND1 HIS D 39 ZN ZN D 201 1555 1555 2.37 LINK OD1 ASP D 51 ZN ZN D 204 1555 1555 1.96 LINK ZN ZN D 201 OXT ACT D 202 1555 1555 1.94 LINK ZN ZN D 201 O ACT D 202 1555 1555 2.05 LINK ZN ZN D 201 OXT ACT D 203 1555 1555 2.26 LINK ZN ZN D 201 O ACT D 203 1555 1555 2.45 LINK ZN ZN D 201 O HOH D 328 1555 1555 2.34 LINK ZN ZN D 204 O HOH D 364 1555 1555 2.14 SITE 1 AC1 4 HIS A 39 ACT A 202 ACT A 203 HOH A 301 SITE 1 AC2 5 HIS A 39 PRO A 41 ASP A 86 ZN A 201 SITE 2 AC2 5 HOH A 301 SITE 1 AC3 6 TYR A 37 HIS A 39 ZN A 201 HOH A 301 SITE 2 AC3 6 SER C 35 LEU C 99 SITE 1 AC4 4 HIS B 39 ACT B 202 ACT B 204 HOH B 332 SITE 1 AC5 8 HIS B 39 PRO B 41 ASP B 86 ZN B 201 SITE 2 AC5 8 ACT B 205 HOH B 332 VAL D 109 LEU D 110 SITE 1 AC6 5 ASP B 86 ACT B 205 GLU D 84 HOH D 302 SITE 2 AC6 5 HOH D 308 SITE 1 AC7 5 TYR B 37 ZN B 201 SER D 35 LEU D 99 SITE 2 AC7 5 PHE D 101 SITE 1 AC8 7 ASP B 86 ACT B 202 ZN B 203 TRP D 92 SITE 2 AC8 7 THR D 108 VAL D 109 HOH D 308 SITE 1 AC9 4 HIS C 39 ACT C 202 ACT C 203 ACT C 205 SITE 1 AD1 7 VAL A 109 LEU A 110 HIS C 39 PRO C 41 SITE 2 AD1 7 ASP C 86 ZN C 201 ACT C 203 SITE 1 AD2 10 TYR A 33 LEU A 110 HOH A 305 HOH A 315 SITE 2 AD2 10 HOH A 353 HIS C 39 ZN C 201 ACT C 202 SITE 3 AD2 10 ACT C 205 HOH C 301 SITE 1 AD3 6 GLU A 84 HOH A 302 HOH A 322 HOH A 325 SITE 2 AD3 6 ASP C 86 HOH C 413 SITE 1 AD4 7 SER A 35 LEU A 99 TYR C 37 HIS C 39 SITE 2 AD4 7 ZN C 201 ACT C 203 HOH C 301 SITE 1 AD5 4 HIS D 39 ACT D 202 ACT D 203 HOH D 328 SITE 1 AD6 8 HIS D 39 PRO D 41 ASP D 86 TYR D 88 SITE 2 AD6 8 ZN D 201 ACT D 203 HOH D 323 HOH D 328 SITE 1 AD7 7 SER B 35 LEU B 99 TYR D 37 HIS D 39 SITE 2 AD7 7 ZN D 201 ACT D 202 HOH D 328 SITE 1 AD8 4 HOH B 351 ASP D 51 HOH D 364 HOH D 367 CRYST1 38.459 42.118 64.995 80.66 86.24 63.02 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026002 -0.013237 0.000269 0.00000 SCALE2 0.000000 0.026642 -0.004019 0.00000 SCALE3 0.000000 0.000000 0.015594 0.00000