data_5TDR # _entry.id 5TDR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5TDR WWPDB D_1000224081 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5TDW _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5TDR _pdbx_database_status.recvd_initial_deposition_date 2016-09-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Andrews, F.H.' 1 'Ali, M.' 2 'Kutateladze, T.G.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 429 _citation.language ? _citation.page_first 2066 _citation.page_last 2074 _citation.title 'Structural Insight into Recognition of Methylated Histone H3K4 by Set3.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2016.09.020 _citation.pdbx_database_id_PubMed 27697561 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gatchalian, J.' 1 primary 'Ali, M.' 2 primary 'Andrews, F.H.' 3 primary 'Zhang, Y.' 4 primary 'Barrett, A.S.' 5 primary 'Kutateladze, T.G.' 6 # _cell.entry_id 5TDR _cell.length_a 25.931 _cell.length_b 43.720 _cell.length_c 84.698 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TDR _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SET domain-containing protein 3' 8041.148 1 ? ? 'unp residues 116-184' ? 2 polymer syn 'Histone H3' 1278.482 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 201 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MGIITCICDLNDDDGFTIQCDHCNRWQHAICYGIKDIGMAPDDYLCNSCDPREVDINLARKIQQERINVK MGIITCICDLNDDDGFTIQCDHCNRWQHAICYGIKDIGMAPDDYLCNSCDPREVDINLARKIQQERINVK A ? 2 'polypeptide(L)' no yes 'ART(MLY)QTARKST' ARTKQTARKST B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ILE n 1 4 ILE n 1 5 THR n 1 6 CYS n 1 7 ILE n 1 8 CYS n 1 9 ASP n 1 10 LEU n 1 11 ASN n 1 12 ASP n 1 13 ASP n 1 14 ASP n 1 15 GLY n 1 16 PHE n 1 17 THR n 1 18 ILE n 1 19 GLN n 1 20 CYS n 1 21 ASP n 1 22 HIS n 1 23 CYS n 1 24 ASN n 1 25 ARG n 1 26 TRP n 1 27 GLN n 1 28 HIS n 1 29 ALA n 1 30 ILE n 1 31 CYS n 1 32 TYR n 1 33 GLY n 1 34 ILE n 1 35 LYS n 1 36 ASP n 1 37 ILE n 1 38 GLY n 1 39 MET n 1 40 ALA n 1 41 PRO n 1 42 ASP n 1 43 ASP n 1 44 TYR n 1 45 LEU n 1 46 CYS n 1 47 ASN n 1 48 SER n 1 49 CYS n 1 50 ASP n 1 51 PRO n 1 52 ARG n 1 53 GLU n 1 54 VAL n 1 55 ASP n 1 56 ILE n 1 57 ASN n 1 58 LEU n 1 59 ALA n 1 60 ARG n 1 61 LYS n 1 62 ILE n 1 63 GLN n 1 64 GLN n 1 65 GLU n 1 66 ARG n 1 67 ILE n 1 68 ASN n 1 69 VAL n 1 70 LYS n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 MLY n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 LYS n 2 10 SER n 2 11 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 70 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SET3, YKR029C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SET3_YEAST P36124 ? 1 GIITCICDLNDDDGFTIQCDHCNRWQHAICYGIKDIGMAPDDYLCNSCDPREVDINLARKIQQERINVK 116 2 PDB 5TDR 5TDR ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5TDR A 2 ? 70 ? P36124 116 ? 184 ? 1 69 2 2 5TDR B 1 ? 11 ? 5TDR 1 ? 11 ? 1 11 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5TDR _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P36124 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5TDR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG3350, 0.2 M sodium citrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type NOIR-1 _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-03-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5TDR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.42 _reflns.d_resolution_low 38.86 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18587 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5TDR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18586 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.850 _refine.ls_d_res_high 1.420 _refine.ls_percent_reflns_obs 98.26 _refine.ls_R_factor_obs 0.1552 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1528 _refine.ls_R_factor_R_free 0.1998 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 929 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.13 _refine.pdbx_overall_phase_error 18.69 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 640 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 845 _refine_hist.d_res_high 1.420 _refine_hist.d_res_low 38.850 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 671 'X-RAY DIFFRACTION' ? f_angle_d 0.893 ? ? 904 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.374 ? ? 261 'X-RAY DIFFRACTION' ? f_chiral_restr 0.039 ? ? 99 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 120 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.4200 1.4949 2227 0.2170 89.00 0.2858 . . 118 . . 'X-RAY DIFFRACTION' . 1.4949 1.5885 2501 0.1702 100.00 0.1972 . . 131 . . 'X-RAY DIFFRACTION' . 1.5885 1.7112 2529 0.1486 100.00 0.2089 . . 133 . . 'X-RAY DIFFRACTION' . 1.7112 1.8834 2558 0.1414 100.00 0.2095 . . 135 . . 'X-RAY DIFFRACTION' . 1.8834 2.1559 2541 0.1292 100.00 0.1814 . . 133 . . 'X-RAY DIFFRACTION' . 2.1559 2.7161 2580 0.1472 100.00 0.1721 . . 136 . . 'X-RAY DIFFRACTION' . 2.7161 38.8641 2721 0.1574 100.00 0.2060 . . 143 . . # _struct.entry_id 5TDR _struct.title 'Set3 PHD finger in complex with histone H3K4me2' _struct.pdbx_descriptor 'SET domain-containing protein 3, Histone H3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5TDR _struct_keywords.text 'Transcription, epigenetics, methylation, histone' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 30 ? GLY A 33 ? ILE A 29 GLY A 32 5 ? 4 HELX_P HELX_P2 AA2 ASP A 36 ? ALA A 40 ? ASP A 35 ALA A 39 5 ? 5 HELX_P HELX_P3 AA3 ASP A 55 ? LYS A 70 ? ASP A 54 LYS A 69 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 6 O ? ? ? 1_555 E NA . NA ? ? A CYS 5 A NA 103 1_555 ? ? ? ? ? ? ? 2.837 ? metalc2 metalc ? ? A CYS 6 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 5 A ZN 102 1_555 ? ? ? ? ? ? ? 2.346 ? metalc3 metalc ? ? A CYS 8 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 7 A ZN 102 1_555 ? ? ? ? ? ? ? 2.319 ? metalc4 metalc ? ? A ASP 9 OD1 ? ? ? 1_555 E NA . NA ? ? A ASP 8 A NA 103 1_555 ? ? ? ? ? ? ? 2.698 ? metalc5 metalc ? ? A ASP 14 OD2 ? ? ? 1_555 F NA . NA ? ? A ASP 13 A NA 104 1_555 ? ? ? ? ? ? ? 2.645 ? metalc6 metalc ? ? A PHE 16 O ? ? ? 1_555 F NA . NA ? ? A PHE 15 A NA 104 1_555 ? ? ? ? ? ? ? 2.767 ? metalc7 metalc ? ? A CYS 20 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 19 A ZN 101 1_555 ? ? ? ? ? ? ? 2.318 ? metalc8 metalc ? ? A CYS 23 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 22 A ZN 101 1_555 ? ? ? ? ? ? ? 2.350 ? metalc9 metalc ? ? A HIS 28 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 27 A ZN 102 1_555 ? ? ? ? ? ? ? 2.094 ? metalc10 metalc ? ? A CYS 31 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 30 A ZN 102 1_555 ? ? ? ? ? ? ? 2.306 ? metalc11 metalc ? ? A CYS 46 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 45 A ZN 101 1_555 ? ? ? ? ? ? ? 2.340 ? metalc12 metalc ? ? A CYS 49 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 48 A ZN 101 1_555 ? ? ? ? ? ? ? 2.299 ? covale1 covale both ? B THR 3 C ? ? ? 1_555 B MLY 4 N ? ? B THR 3 B MLY 4 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale both ? B MLY 4 C ? ? ? 1_555 B GLN 5 N ? ? B MLY 4 B GLN 5 1_555 ? ? ? ? ? ? ? 1.326 ? metalc13 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 103 A HOH 324 1_555 ? ? ? ? ? ? ? 2.803 ? metalc14 metalc ? ? F NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 104 A HOH 316 1_555 ? ? ? ? ? ? ? 2.720 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 26 ? HIS A 28 ? TRP A 25 HIS A 27 AA1 2 PHE A 16 ? GLN A 19 ? PHE A 15 GLN A 18 AA1 3 ARG B 2 ? GLN B 5 ? ARG B 2 GLN B 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 27 ? O GLN A 26 N ILE A 18 ? N ILE A 17 AA1 2 3 N GLN A 19 ? N GLN A 18 O ARG B 2 ? O ARG B 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 4 'binding site for residue ZN A 101' AC2 Software A ZN 102 ? 4 'binding site for residue ZN A 102' AC3 Software A NA 103 ? 4 'binding site for residue NA A 103' AC4 Software A NA 104 ? 5 'binding site for residue NA A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 20 ? CYS A 19 . ? 1_555 ? 2 AC1 4 CYS A 23 ? CYS A 22 . ? 1_555 ? 3 AC1 4 CYS A 46 ? CYS A 45 . ? 1_555 ? 4 AC1 4 CYS A 49 ? CYS A 48 . ? 1_555 ? 5 AC2 4 CYS A 6 ? CYS A 5 . ? 1_555 ? 6 AC2 4 CYS A 8 ? CYS A 7 . ? 1_555 ? 7 AC2 4 HIS A 28 ? HIS A 27 . ? 1_555 ? 8 AC2 4 CYS A 31 ? CYS A 30 . ? 1_555 ? 9 AC3 4 CYS A 6 ? CYS A 5 . ? 1_555 ? 10 AC3 4 ASP A 9 ? ASP A 8 . ? 1_555 ? 11 AC3 4 ASN A 11 ? ASN A 10 . ? 1_555 ? 12 AC3 4 HOH G . ? HOH A 324 . ? 1_555 ? 13 AC4 5 ASP A 14 ? ASP A 13 . ? 1_555 ? 14 AC4 5 PHE A 16 ? PHE A 15 . ? 1_555 ? 15 AC4 5 ALA A 29 ? ALA A 28 . ? 1_555 ? 16 AC4 5 ILE A 30 ? ILE A 29 . ? 1_555 ? 17 AC4 5 HOH G . ? HOH A 316 . ? 1_555 ? # _atom_sites.entry_id 5TDR _atom_sites.fract_transf_matrix[1][1] 0.038564 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022873 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011807 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET ALA A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 ILE 3 2 2 ILE ILE A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 CYS 6 5 5 CYS CYS A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 CYS 8 7 7 CYS CYS A . n A 1 9 ASP 9 8 8 ASP ASP A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 ASP 12 11 11 ASP ASP A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLY 15 14 14 GLY GLY A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 CYS 20 19 19 CYS CYS A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 HIS 22 21 21 HIS HIS A . n A 1 23 CYS 23 22 22 CYS CYS A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 TRP 26 25 25 TRP TRP A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 ILE 30 29 29 ILE ILE A . n A 1 31 CYS 31 30 30 CYS CYS A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 MET 39 38 38 MET MET A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 CYS 46 45 45 CYS CYS A . n A 1 47 ASN 47 46 46 ASN ASN A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 CYS 49 48 48 CYS CYS A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 ARG 52 51 51 ARG ARG A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 ASN 57 56 56 ASN ASN A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 GLN 64 63 63 GLN GLN A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 LYS 70 69 69 LYS LYS A . n B 2 1 ALA 1 1 1 ALA ALA B . n B 2 2 ARG 2 2 2 ARG ARG B . n B 2 3 THR 3 3 3 THR THR B . n B 2 4 MLY 4 4 4 MLY MLY B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 THR 6 6 6 THR THR B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 ARG 8 8 8 ARG ARG B . n B 2 9 LYS 9 9 9 LYS LYS B . n B 2 10 SER 10 10 10 SER SER B . n B 2 11 THR 11 11 11 THR THR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 101 1 ZN ZN A . D 3 ZN 1 102 2 ZN ZN A . E 4 NA 1 103 1 NA NA A . F 4 NA 1 104 2 NA NA A . G 5 HOH 1 201 182 HOH HOH A . G 5 HOH 2 202 91 HOH HOH A . G 5 HOH 3 203 133 HOH HOH A . G 5 HOH 4 204 171 HOH HOH A . G 5 HOH 5 205 64 HOH HOH A . G 5 HOH 6 206 101 HOH HOH A . G 5 HOH 7 207 129 HOH HOH A . G 5 HOH 8 208 144 HOH HOH A . G 5 HOH 9 209 83 HOH HOH A . G 5 HOH 10 210 2 HOH HOH A . G 5 HOH 11 211 25 HOH HOH A . G 5 HOH 12 212 173 HOH HOH A . G 5 HOH 13 213 5 HOH HOH A . G 5 HOH 14 214 110 HOH HOH A . G 5 HOH 15 215 7 HOH HOH A . G 5 HOH 16 216 124 HOH HOH A . G 5 HOH 17 217 30 HOH HOH A . G 5 HOH 18 218 17 HOH HOH A . G 5 HOH 19 219 79 HOH HOH A . G 5 HOH 20 220 12 HOH HOH A . G 5 HOH 21 221 33 HOH HOH A . G 5 HOH 22 222 152 HOH HOH A . G 5 HOH 23 223 154 HOH HOH A . G 5 HOH 24 224 24 HOH HOH A . G 5 HOH 25 225 142 HOH HOH A . G 5 HOH 26 226 11 HOH HOH A . G 5 HOH 27 227 27 HOH HOH A . G 5 HOH 28 228 45 HOH HOH A . G 5 HOH 29 229 67 HOH HOH A . G 5 HOH 30 230 175 HOH HOH A . G 5 HOH 31 231 21 HOH HOH A . G 5 HOH 32 232 9 HOH HOH A . G 5 HOH 33 233 128 HOH HOH A . G 5 HOH 34 234 95 HOH HOH A . G 5 HOH 35 235 37 HOH HOH A . G 5 HOH 36 236 121 HOH HOH A . G 5 HOH 37 237 23 HOH HOH A . G 5 HOH 38 238 84 HOH HOH A . G 5 HOH 39 239 117 HOH HOH A . G 5 HOH 40 240 6 HOH HOH A . G 5 HOH 41 241 22 HOH HOH A . G 5 HOH 42 242 3 HOH HOH A . G 5 HOH 43 243 136 HOH HOH A . G 5 HOH 44 244 188 HOH HOH A . G 5 HOH 45 245 61 HOH HOH A . G 5 HOH 46 246 18 HOH HOH A . G 5 HOH 47 247 76 HOH HOH A . G 5 HOH 48 248 81 HOH HOH A . G 5 HOH 49 249 147 HOH HOH A . G 5 HOH 50 250 1 HOH HOH A . G 5 HOH 51 251 35 HOH HOH A . G 5 HOH 52 252 14 HOH HOH A . G 5 HOH 53 253 59 HOH HOH A . G 5 HOH 54 254 72 HOH HOH A . G 5 HOH 55 255 40 HOH HOH A . G 5 HOH 56 256 54 HOH HOH A . G 5 HOH 57 257 189 HOH HOH A . G 5 HOH 58 258 122 HOH HOH A . G 5 HOH 59 259 62 HOH HOH A . G 5 HOH 60 260 148 HOH HOH A . G 5 HOH 61 261 113 HOH HOH A . G 5 HOH 62 262 71 HOH HOH A . G 5 HOH 63 263 36 HOH HOH A . G 5 HOH 64 264 60 HOH HOH A . G 5 HOH 65 265 93 HOH HOH A . G 5 HOH 66 266 57 HOH HOH A . G 5 HOH 67 267 127 HOH HOH A . G 5 HOH 68 268 19 HOH HOH A . G 5 HOH 69 269 170 HOH HOH A . G 5 HOH 70 270 49 HOH HOH A . G 5 HOH 71 271 44 HOH HOH A . G 5 HOH 72 272 68 HOH HOH A . G 5 HOH 73 273 166 HOH HOH A . G 5 HOH 74 274 141 HOH HOH A . G 5 HOH 75 275 80 HOH HOH A . G 5 HOH 76 276 143 HOH HOH A . G 5 HOH 77 277 92 HOH HOH A . G 5 HOH 78 278 164 HOH HOH A . G 5 HOH 79 279 200 HOH HOH A . G 5 HOH 80 280 123 HOH HOH A . G 5 HOH 81 281 26 HOH HOH A . G 5 HOH 82 282 103 HOH HOH A . G 5 HOH 83 283 177 HOH HOH A . G 5 HOH 84 284 191 HOH HOH A . G 5 HOH 85 285 115 HOH HOH A . G 5 HOH 86 286 29 HOH HOH A . G 5 HOH 87 287 87 HOH HOH A . G 5 HOH 88 288 58 HOH HOH A . G 5 HOH 89 289 20 HOH HOH A . G 5 HOH 90 290 15 HOH HOH A . G 5 HOH 91 291 116 HOH HOH A . G 5 HOH 92 292 56 HOH HOH A . G 5 HOH 93 293 153 HOH HOH A . G 5 HOH 94 294 172 HOH HOH A . G 5 HOH 95 295 109 HOH HOH A . G 5 HOH 96 296 195 HOH HOH A . G 5 HOH 97 297 39 HOH HOH A . G 5 HOH 98 298 100 HOH HOH A . G 5 HOH 99 299 77 HOH HOH A . G 5 HOH 100 300 34 HOH HOH A . G 5 HOH 101 301 134 HOH HOH A . G 5 HOH 102 302 190 HOH HOH A . G 5 HOH 103 303 105 HOH HOH A . G 5 HOH 104 304 199 HOH HOH A . G 5 HOH 105 305 63 HOH HOH A . G 5 HOH 106 306 159 HOH HOH A . G 5 HOH 107 307 198 HOH HOH A . G 5 HOH 108 308 158 HOH HOH A . G 5 HOH 109 309 178 HOH HOH A . G 5 HOH 110 310 86 HOH HOH A . G 5 HOH 111 311 149 HOH HOH A . G 5 HOH 112 312 53 HOH HOH A . G 5 HOH 113 313 181 HOH HOH A . G 5 HOH 114 314 94 HOH HOH A . G 5 HOH 115 315 65 HOH HOH A . G 5 HOH 116 316 55 HOH HOH A . G 5 HOH 117 317 78 HOH HOH A . G 5 HOH 118 318 32 HOH HOH A . G 5 HOH 119 319 176 HOH HOH A . G 5 HOH 120 320 46 HOH HOH A . G 5 HOH 121 321 107 HOH HOH A . G 5 HOH 122 322 89 HOH HOH A . G 5 HOH 123 323 38 HOH HOH A . G 5 HOH 124 324 28 HOH HOH A . G 5 HOH 125 325 42 HOH HOH A . G 5 HOH 126 326 163 HOH HOH A . G 5 HOH 127 327 184 HOH HOH A . G 5 HOH 128 328 73 HOH HOH A . G 5 HOH 129 329 160 HOH HOH A . G 5 HOH 130 330 140 HOH HOH A . G 5 HOH 131 331 132 HOH HOH A . G 5 HOH 132 332 43 HOH HOH A . G 5 HOH 133 333 126 HOH HOH A . G 5 HOH 134 334 66 HOH HOH A . G 5 HOH 135 335 75 HOH HOH A . G 5 HOH 136 336 193 HOH HOH A . G 5 HOH 137 337 196 HOH HOH A . G 5 HOH 138 338 74 HOH HOH A . G 5 HOH 139 339 85 HOH HOH A . G 5 HOH 140 340 179 HOH HOH A . G 5 HOH 141 341 137 HOH HOH A . G 5 HOH 142 342 52 HOH HOH A . G 5 HOH 143 343 146 HOH HOH A . G 5 HOH 144 344 41 HOH HOH A . G 5 HOH 145 345 16 HOH HOH A . G 5 HOH 146 346 114 HOH HOH A . G 5 HOH 147 347 70 HOH HOH A . G 5 HOH 148 348 151 HOH HOH A . G 5 HOH 149 349 31 HOH HOH A . G 5 HOH 150 350 185 HOH HOH A . G 5 HOH 151 351 186 HOH HOH A . G 5 HOH 152 352 51 HOH HOH A . G 5 HOH 153 353 98 HOH HOH A . G 5 HOH 154 354 10 HOH HOH A . G 5 HOH 155 355 48 HOH HOH A . G 5 HOH 156 356 139 HOH HOH A . G 5 HOH 157 357 102 HOH HOH A . G 5 HOH 158 358 194 HOH HOH A . G 5 HOH 159 359 131 HOH HOH A . G 5 HOH 160 360 201 HOH HOH A . G 5 HOH 161 361 69 HOH HOH A . G 5 HOH 162 362 162 HOH HOH A . G 5 HOH 163 363 120 HOH HOH A . G 5 HOH 164 364 96 HOH HOH A . G 5 HOH 165 365 108 HOH HOH A . G 5 HOH 166 366 150 HOH HOH A . G 5 HOH 167 367 88 HOH HOH A . G 5 HOH 168 368 97 HOH HOH A . G 5 HOH 169 369 13 HOH HOH A . G 5 HOH 170 370 119 HOH HOH A . G 5 HOH 171 371 156 HOH HOH A . G 5 HOH 172 372 167 HOH HOH A . G 5 HOH 173 373 180 HOH HOH A . G 5 HOH 174 374 192 HOH HOH A . G 5 HOH 175 375 183 HOH HOH A . G 5 HOH 176 376 145 HOH HOH A . G 5 HOH 177 377 169 HOH HOH A . G 5 HOH 178 378 165 HOH HOH A . G 5 HOH 179 379 168 HOH HOH A . G 5 HOH 180 380 135 HOH HOH A . G 5 HOH 181 381 90 HOH HOH A . H 5 HOH 1 101 99 HOH HOH B . H 5 HOH 2 102 104 HOH HOH B . H 5 HOH 3 103 82 HOH HOH B . H 5 HOH 4 104 50 HOH HOH B . H 5 HOH 5 105 112 HOH HOH B . H 5 HOH 6 106 4 HOH HOH B . H 5 HOH 7 107 157 HOH HOH B . H 5 HOH 8 108 8 HOH HOH B . H 5 HOH 9 109 155 HOH HOH B . H 5 HOH 10 110 111 HOH HOH B . H 5 HOH 11 111 118 HOH HOH B . H 5 HOH 12 112 197 HOH HOH B . H 5 HOH 13 113 106 HOH HOH B . H 5 HOH 14 114 125 HOH HOH B . H 5 HOH 15 115 161 HOH HOH B . H 5 HOH 16 116 138 HOH HOH B . H 5 HOH 17 117 187 HOH HOH B . H 5 HOH 18 118 174 HOH HOH B . H 5 HOH 19 119 47 HOH HOH B . H 5 HOH 20 120 130 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1250 ? 1 MORE -23 ? 1 'SSA (A^2)' 5630 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 276 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A CYS 6 ? A CYS 5 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 OD1 ? A ASP 9 ? A ASP 8 ? 1_555 83.0 ? 2 O ? A CYS 6 ? A CYS 5 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? G HOH . ? A HOH 324 ? 1_555 123.0 ? 3 OD1 ? A ASP 9 ? A ASP 8 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? G HOH . ? A HOH 324 ? 1_555 91.4 ? 4 SG ? A CYS 6 ? A CYS 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 8 ? A CYS 7 ? 1_555 112.7 ? 5 SG ? A CYS 6 ? A CYS 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 ND1 ? A HIS 28 ? A HIS 27 ? 1_555 103.1 ? 6 SG ? A CYS 8 ? A CYS 7 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 ND1 ? A HIS 28 ? A HIS 27 ? 1_555 96.7 ? 7 SG ? A CYS 6 ? A CYS 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 31 ? A CYS 30 ? 1_555 110.5 ? 8 SG ? A CYS 8 ? A CYS 7 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 31 ? A CYS 30 ? 1_555 118.9 ? 9 ND1 ? A HIS 28 ? A HIS 27 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 31 ? A CYS 30 ? 1_555 113.0 ? 10 OD2 ? A ASP 14 ? A ASP 13 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? A PHE 16 ? A PHE 15 ? 1_555 103.3 ? 11 OD2 ? A ASP 14 ? A ASP 13 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 88.6 ? 12 O ? A PHE 16 ? A PHE 15 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 121.7 ? 13 SG ? A CYS 20 ? A CYS 19 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 22 ? 1_555 107.3 ? 14 SG ? A CYS 20 ? A CYS 19 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 46 ? A CYS 45 ? 1_555 112.4 ? 15 SG ? A CYS 23 ? A CYS 22 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 46 ? A CYS 45 ? 1_555 112.1 ? 16 SG ? A CYS 20 ? A CYS 19 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 49 ? A CYS 48 ? 1_555 106.6 ? 17 SG ? A CYS 23 ? A CYS 22 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 49 ? A CYS 48 ? 1_555 108.5 ? 18 SG ? A CYS 46 ? A CYS 45 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 49 ? A CYS 48 ? 1_555 109.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-02 2 'Structure model' 1 1 2017-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 204 ? ? O A HOH 302 ? ? 1.87 2 1 O A HOH 283 ? ? O A HOH 307 ? ? 2.06 3 1 O A HOH 279 ? ? O A HOH 356 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 52 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 365 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 10 ? ? -92.25 53.06 2 1 HIS A 21 ? ? -102.09 -60.93 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 372 ? 5.87 . 2 1 O ? A HOH 373 ? 6.15 . 3 1 O ? A HOH 374 ? 6.19 . 4 1 O ? A HOH 375 ? 6.39 . 5 1 O ? A HOH 376 ? 6.41 . 6 1 O ? A HOH 377 ? 6.43 . 7 1 O ? A HOH 378 ? 6.45 . 8 1 O ? A HOH 379 ? 6.54 . 9 1 O ? A HOH 380 ? 6.55 . 10 1 O ? A HOH 381 ? 6.58 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 0 ? CG ? A MET 1 CG 2 1 Y 1 A MET 0 ? SD ? A MET 1 SD 3 1 Y 1 A MET 0 ? CE ? A MET 1 CE # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'SODIUM ION' NA 5 water HOH #