HEADER OXIDOREDUCTASE 19-SEP-16 5TDU TITLE TOLUENE 4-MONOOXYGENASE (T4MOHD) BOUND TO PRODUCT AFTER TURNOVER IN TITLE 2 CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-493; COMPND 5 SYNONYM: TOLUENE-4-MONOOXYGENASE HYDROXYLASE SUBUNIT,T4MOH; COMPND 6 EC: 1.14.13.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN E; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 1-308; COMPND 12 SYNONYM: T4MOE; COMPND 13 EC: 1.14.13.-; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN B; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: T4MOB; COMPND 19 EC: 1.14.13.-; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D; COMPND 23 CHAIN: E; COMPND 24 SYNONYM: T4MO EFFECTOR PROTEIN D,T4MOD,TOLUENE-4-MONOOXYGENASE COMPND 25 EFFECTOR PROTEIN; COMPND 26 EC: 1.14.13.-; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 3 ORGANISM_TAXID: 300; SOURCE 4 GENE: TMOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 RILP; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 10 ORGANISM_TAXID: 300; SOURCE 11 GENE: TMOE; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 RILP; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 17 ORGANISM_TAXID: 300; SOURCE 18 GENE: TMOB; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21 RILP; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 24 ORGANISM_TAXID: 300; SOURCE 25 GENE: TMOD; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21 RILP KEYWDS DIIRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.ACHESON,B.G.FOX REVDAT 6 04-OCT-23 5TDU 1 LINK REVDAT 5 27-NOV-19 5TDU 1 REMARK REVDAT 4 20-SEP-17 5TDU 1 REMARK REVDAT 3 26-APR-17 5TDU 1 JRNL REVDAT 2 12-APR-17 5TDU 1 JRNL REVDAT 1 22-MAR-17 5TDU 0 JRNL AUTH J.F.ACHESON,L.J.BAILEY,T.C.BRUNOLD,B.G.FOX JRNL TITL IN-CRYSTAL REACTION CYCLE OF A TOLUENE-BOUND DIIRON JRNL TITL 2 HYDROXYLASE. JRNL REF NATURE V. 544 191 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28346937 JRNL DOI 10.1038/NATURE21681 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1957 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 103656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8659 - 4.1966 1.00 7744 153 0.1371 0.1684 REMARK 3 2 4.1966 - 3.3313 1.00 7541 148 0.1321 0.1420 REMARK 3 3 3.3313 - 2.9102 1.00 7490 147 0.1486 0.1849 REMARK 3 4 2.9102 - 2.6442 1.00 7470 148 0.1428 0.1720 REMARK 3 5 2.6442 - 2.4547 1.00 7455 146 0.1333 0.1725 REMARK 3 6 2.4547 - 2.3099 1.00 7419 145 0.1300 0.1740 REMARK 3 7 2.3099 - 2.1943 1.00 7409 147 0.1311 0.1900 REMARK 3 8 2.1943 - 2.0987 1.00 7419 146 0.1353 0.2262 REMARK 3 9 2.0987 - 2.0179 1.00 7404 145 0.1430 0.1930 REMARK 3 10 2.0179 - 1.9483 1.00 7381 146 0.1454 0.1949 REMARK 3 11 1.9483 - 1.8874 1.00 7361 144 0.1433 0.2100 REMARK 3 12 1.8874 - 1.8334 0.97 7224 143 0.1514 0.2177 REMARK 3 13 1.8334 - 1.7852 0.93 6877 134 0.1665 0.2729 REMARK 3 14 1.7852 - 1.7416 0.74 5462 108 0.1762 0.2621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8437 REMARK 3 ANGLE : 0.957 11494 REMARK 3 CHIRALITY : 0.043 1187 REMARK 3 PLANARITY : 0.005 1504 REMARK 3 DIHEDRAL : 13.796 3135 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98757 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.0, 18% PEG 3350, REMARK 280 200 MM AMMONIUM CHLORIDE, 10 MM DITHIONITE, 2 MM METHYLVIOLOGEN, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.36050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.36050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.61850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.00150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.61850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.00150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.36050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.61850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.00150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.36050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.61850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.00150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -228.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 361.44200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 918 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 923 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 674 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 CYS A 492 REMARK 465 LYS A 493 REMARK 465 MET B 1 REMARK 465 ASP B 307 REMARK 465 ILE B 308 REMARK 465 MET C 1 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE A 501 HO1 PCR A 503 1.49 REMARK 500 OD1 ASP B 40 O HOH B 401 1.82 REMARK 500 O ASP A 386 O HOH A 601 1.84 REMARK 500 O HOH A 1027 O HOH A 1031 1.84 REMARK 500 O HOH A 977 O HOH A 984 1.85 REMARK 500 O HOH A 626 O HOH A 660 1.85 REMARK 500 OE1 GLU A 247 O HOH A 602 1.92 REMARK 500 NE2 GLN B 238 O HOH B 402 1.93 REMARK 500 O HOH A 704 O HOH A 869 1.93 REMARK 500 O HOH A 926 O HOH A 949 1.97 REMARK 500 O HOH A 957 O HOH A 961 2.01 REMARK 500 OG1 THR C 58 O HOH C 101 2.03 REMARK 500 O HOH A 914 O HOH B 612 2.06 REMARK 500 O HOH B 549 O HOH B 609 2.06 REMARK 500 O HOH A 970 O HOH B 655 2.06 REMARK 500 OE2 GLU A 415 O HOH A 603 2.08 REMARK 500 NH1 ARG B 295 O HOH B 403 2.11 REMARK 500 O HOH A 933 O HOH A 973 2.11 REMARK 500 O SER A 85 O HOH A 604 2.13 REMARK 500 O HOH E 268 O HOH E 307 2.13 REMARK 500 O HOH E 270 O HOH E 318 2.14 REMARK 500 O HOH B 539 O HOH B 583 2.15 REMARK 500 O HOH A 813 O HOH A 869 2.15 REMARK 500 NZ LYS B 20 O HOH B 404 2.15 REMARK 500 O HOH A 757 O HOH A 936 2.16 REMARK 500 OD1 ASP A 410 O HOH A 605 2.18 REMARK 500 OE2 GLU A 64 O HOH A 606 2.18 REMARK 500 OE2 GLU A 431 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH A 613 3557 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 279 -50.13 -136.96 REMARK 500 GLN A 301 -64.04 -96.45 REMARK 500 TRP A 338 31.71 -99.07 REMARK 500 ARG A 368 -93.33 -112.21 REMARK 500 MET A 399 -68.13 -105.08 REMARK 500 ASP A 411 53.66 -116.65 REMARK 500 TRP A 412 129.66 -38.42 REMARK 500 ASP A 440 66.31 -159.78 REMARK 500 ARG B 59 -65.27 -106.27 REMARK 500 ASN B 68 64.17 -152.56 REMARK 500 LYS C 12 -2.25 87.56 REMARK 500 VAL C 21 -169.37 -102.33 REMARK 500 CYS C 38 -59.24 -136.09 REMARK 500 ARG E 46 -56.46 70.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 GLU A 134 OE1 87.3 REMARK 620 3 HIS A 137 ND1 103.8 90.0 REMARK 620 4 PCR A 503 OH 92.2 88.1 163.8 REMARK 620 5 HOH A 621 O 169.1 98.7 85.4 79.0 REMARK 620 6 HOH A 661 O 87.0 174.0 93.2 90.2 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 GLU A 197 OE2 89.3 REMARK 620 3 GLU A 231 OE2 171.5 92.8 REMARK 620 4 HIS A 234 NE2 86.9 95.2 84.7 REMARK 620 5 PCR A 503 OH 81.8 97.9 106.1 162.6 REMARK 620 6 HOH A 621 O 104.7 166.0 73.5 86.3 83.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PCR A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TDS RELATED DB: PDB REMARK 900 RELATED ID: 5TDT RELATED DB: PDB REMARK 900 RELATED ID: 5TDV RELATED DB: PDB DBREF 5TDU A 1 493 UNP Q00456 TMOA_PSEME 1 493 DBREF 5TDU B 1 308 UNP Q00460 TMOE_PSEME 1 308 DBREF 5TDU C 1 84 UNP Q00457 TMOB_PSEME 1 84 DBREF 5TDU E 1 103 UNP Q00459 TMOD_PSEME 1 103 SEQADV 5TDU TRP A 336 UNP Q00456 LEU 336 CONFLICT SEQADV 5TDU TYR A 337 UNP Q00456 ASP 337 CONFLICT SEQRES 1 A 493 MET ALA MET HIS PRO ARG LYS ASP TRP TYR GLU LEU THR SEQRES 2 A 493 ARG ALA THR ASN TRP THR PRO SER TYR VAL THR GLU GLU SEQRES 3 A 493 GLN LEU PHE PRO GLU ARG MET SER GLY HIS MET GLY ILE SEQRES 4 A 493 PRO LEU GLU LYS TRP GLU SER TYR ASP GLU PRO TYR LYS SEQRES 5 A 493 THR SER TYR PRO GLU TYR VAL SER ILE GLN ARG GLU LYS SEQRES 6 A 493 ASP ALA GLY ALA TYR SER VAL LYS ALA ALA LEU GLU ARG SEQRES 7 A 493 ALA LYS ILE TYR GLU ASN SER ASP PRO GLY TRP ILE SER SEQRES 8 A 493 THR LEU LYS SER HIS TYR GLY ALA ILE ALA VAL GLY GLU SEQRES 9 A 493 TYR ALA ALA VAL THR GLY GLU GLY ARG MET ALA ARG PHE SEQRES 10 A 493 SER LYS ALA PRO GLY ASN ARG ASN MET ALA THR PHE GLY SEQRES 11 A 493 MET MET ASP GLU LEU ARG HIS GLY GLN LEU GLN LEU PHE SEQRES 12 A 493 PHE PRO HIS GLU TYR CYS LYS LYS ASP ARG GLN PHE ASP SEQRES 13 A 493 TRP ALA TRP ARG ALA TYR HIS SER ASN GLU TRP ALA ALA SEQRES 14 A 493 ILE ALA ALA LYS HIS PHE PHE ASP ASP ILE ILE THR GLY SEQRES 15 A 493 ARG ASP ALA ILE SER VAL ALA ILE MET LEU THR PHE SER SEQRES 16 A 493 PHE GLU THR GLY PHE THR ASN MET GLN PHE LEU GLY LEU SEQRES 17 A 493 ALA ALA ASP ALA ALA GLU ALA GLY ASP TYR THR PHE ALA SEQRES 18 A 493 ASN LEU ILE SER SER ILE GLN THR ASP GLU SER ARG HIS SEQRES 19 A 493 ALA GLN GLN GLY GLY PRO ALA LEU GLN LEU LEU ILE GLU SEQRES 20 A 493 ASN GLY LYS ARG GLU GLU ALA GLN LYS LYS VAL ASP MET SEQRES 21 A 493 ALA ILE TRP ARG ALA TRP ARG LEU PHE ALA VAL LEU THR SEQRES 22 A 493 GLY PRO VAL MET ASP TYR TYR THR PRO LEU GLU ASP ARG SEQRES 23 A 493 SER GLN SER PHE LYS GLU PHE MET TYR GLU TRP ILE ILE SEQRES 24 A 493 GLY GLN PHE GLU ARG SER LEU ILE ASP LEU GLY LEU ASP SEQRES 25 A 493 LYS PRO TRP TYR TRP ASP LEU PHE LEU LYS ASP ILE ASP SEQRES 26 A 493 GLU LEU HIS HIS SER TYR HIS MET GLY VAL TRP TYR TRP SEQRES 27 A 493 ARG THR THR ALA TRP TRP ASN PRO ALA ALA GLY VAL THR SEQRES 28 A 493 PRO GLU GLU ARG ASP TRP LEU GLU GLU LYS TYR PRO GLY SEQRES 29 A 493 TRP ASN LYS ARG TRP GLY ARG CYS TRP ASP VAL ILE THR SEQRES 30 A 493 GLU ASN VAL LEU ASN ASP ARG MET ASP LEU VAL SER PRO SEQRES 31 A 493 GLU THR LEU PRO SER VAL CYS ASN MET SER GLN ILE PRO SEQRES 32 A 493 LEU VAL GLY VAL PRO GLY ASP ASP TRP ASN ILE GLU VAL SEQRES 33 A 493 PHE SER LEU GLU HIS ASN GLY ARG LEU TYR HIS PHE GLY SEQRES 34 A 493 SER GLU VAL ASP ARG TRP VAL PHE GLN GLN ASP PRO VAL SEQRES 35 A 493 GLN TYR GLN ASN HIS MET ASN ILE VAL ASP ARG PHE LEU SEQRES 36 A 493 ALA GLY GLN ILE GLN PRO MET THR LEU GLU GLY ALA LEU SEQRES 37 A 493 LYS TYR MET GLY PHE GLN SER ILE GLU GLU MET GLY LYS SEQRES 38 A 493 ASP ALA HIS ASP PHE ALA TRP ALA ASP LYS CYS LYS SEQRES 1 B 308 MET SER PHE GLU SER LYS LYS PRO MET ARG THR TRP SER SEQRES 2 B 308 HIS LEU ALA GLU MET ARG LYS LYS PRO SER GLU TYR ASP SEQRES 3 B 308 ILE VAL SER ARG LYS LEU HIS TYR SER THR ASN ASN PRO SEQRES 4 B 308 ASP SER PRO TRP GLU LEU SER PRO ASP SER PRO MET ASN SEQRES 5 B 308 LEU TRP TYR LYS GLN TYR ARG ASN ALA SER PRO LEU LYS SEQRES 6 B 308 HIS ASP ASN TRP ASP ALA PHE THR ASP PRO ASP GLN LEU SEQRES 7 B 308 VAL TYR ARG THR TYR ASN LEU MET GLN ASP GLY GLN GLU SEQRES 8 B 308 SER TYR VAL GLN SER LEU PHE ASP GLN PHE ASN GLU ARG SEQRES 9 B 308 GLU HIS ASP GLN MET VAL ARG GLU GLY TRP GLU HIS THR SEQRES 10 B 308 MET ALA ARG CYS TYR SER PRO LEU ARG TYR LEU PHE HIS SEQRES 11 B 308 CYS LEU GLN MET SER SER ALA TYR VAL GLN GLN MET ALA SEQRES 12 B 308 PRO ALA SER THR ILE SER ASN CYS CYS ILE LEU GLN THR SEQRES 13 B 308 ALA ASP SER LEU ARG TRP LEU THR HIS THR ALA TYR ARG SEQRES 14 B 308 THR HIS GLU LEU SER LEU THR TYR PRO ASP ALA GLY LEU SEQRES 15 B 308 GLY GLU HIS GLU ARG GLU LEU TRP GLU LYS GLU PRO GLY SEQRES 16 B 308 TRP GLN GLY LEU ARG GLU LEU MET GLU LYS GLN LEU THR SEQRES 17 B 308 ALA PHE ASP TRP GLY GLU ALA PHE VAL SER LEU ASN LEU SEQRES 18 B 308 VAL VAL LYS PRO MET ILE VAL GLU SER ILE PHE LYS PRO SEQRES 19 B 308 LEU GLN GLN GLN ALA TRP GLU ASN ASN ASP THR LEU LEU SEQRES 20 B 308 PRO LEU LEU ILE ASP SER GLN LEU LYS ASP ALA GLU ARG SEQRES 21 B 308 HIS SER ARG TRP SER LYS ALA LEU VAL LYS HIS ALA LEU SEQRES 22 B 308 GLU ASN PRO ASP ASN HIS ALA VAL ILE GLU GLY TRP ILE SEQRES 23 B 308 GLU LYS TRP ARG PRO LEU ALA ASP ARG ALA ALA GLU ALA SEQRES 24 B 308 TYR LEU SER MET LEU SER SER ASP ILE SEQRES 1 C 84 MET SER ALA PHE PRO VAL HIS ALA ALA PHE GLU LYS ASP SEQRES 2 C 84 PHE LEU VAL GLN LEU VAL VAL VAL ASP LEU ASN ASP SER SEQRES 3 C 84 MET ASP GLN VAL ALA GLU LYS VAL ALA TYR HIS CYS VAL SEQRES 4 C 84 ASN ARG ARG VAL ALA PRO ARG GLU GLY VAL MET ARG VAL SEQRES 5 C 84 ARG LYS HIS ARG SER THR GLU LEU PHE PRO ARG ASP MET SEQRES 6 C 84 THR ILE ALA GLU SER GLY LEU ASN PRO THR GLU VAL ILE SEQRES 7 C 84 ASP VAL VAL PHE GLU GLU SEQRES 1 E 103 MET SER THR LEU ALA ASP GLN ALA LEU HIS ASN ASN ASN SEQRES 2 E 103 VAL GLY PRO ILE ILE ARG ALA GLY ASP LEU VAL GLU PRO SEQRES 3 E 103 VAL ILE GLU THR ALA GLU ILE ASP ASN PRO GLY LYS GLU SEQRES 4 E 103 ILE THR VAL GLU ASP ARG ARG ALA TYR VAL ARG ILE ALA SEQRES 5 E 103 ALA GLU GLY GLU LEU ILE LEU THR ARG LYS THR LEU GLU SEQRES 6 E 103 GLU GLN LEU GLY ARG PRO PHE ASN MET GLN GLU LEU GLU SEQRES 7 E 103 ILE ASN LEU ALA SER PHE ALA GLY GLN ILE GLN ALA ASP SEQRES 8 E 103 GLU ASP GLN ILE ARG PHE TYR PHE ASP LYS THR MET HET FE A 501 1 HET FE A 502 1 HET PCR A 503 16 HETNAM FE FE (III) ION HETNAM PCR P-CRESOL FORMUL 5 FE 2(FE 3+) FORMUL 7 PCR C7 H8 O FORMUL 8 HOH *902(H2 O) HELIX 1 AA1 PRO A 5 ARG A 14 1 10 HELIX 2 AA2 THR A 24 PHE A 29 1 6 HELIX 3 AA3 PRO A 30 GLY A 35 1 6 HELIX 4 AA4 PRO A 40 GLU A 45 1 6 HELIX 5 AA5 SER A 54 LEU A 76 1 23 HELIX 6 AA6 LYS A 80 SER A 85 1 6 HELIX 7 AA7 ASP A 86 SER A 118 1 33 HELIX 8 AA8 ALA A 120 GLU A 147 1 28 HELIX 9 AA9 ASP A 152 PHE A 155 5 4 HELIX 10 AB1 ASP A 156 ALA A 161 1 6 HELIX 11 AB2 TYR A 162 SER A 164 5 3 HELIX 12 AB3 GLU A 166 ILE A 180 1 15 HELIX 13 AB4 ASP A 184 LEU A 192 1 9 HELIX 14 AB5 PHE A 200 LEU A 206 1 7 HELIX 15 AB6 LEU A 206 ALA A 215 1 10 HELIX 16 AB7 ASP A 217 ALA A 235 1 19 HELIX 17 AB8 GLN A 237 ASN A 248 1 12 HELIX 18 AB9 LYS A 250 TYR A 279 1 30 HELIX 19 AC1 PRO A 282 ARG A 286 5 5 HELIX 20 AC2 SER A 289 ILE A 298 1 10 HELIX 21 AC3 GLN A 301 LEU A 309 1 9 HELIX 22 AC4 TYR A 316 TRP A 338 1 23 HELIX 23 AC5 ARG A 339 ALA A 342 5 4 HELIX 24 AC6 THR A 351 TYR A 362 1 12 HELIX 25 AC7 ARG A 368 ASN A 382 1 15 HELIX 26 AC8 ARG A 384 SER A 389 5 6 HELIX 27 AC9 PRO A 408 TRP A 412 5 5 HELIX 28 AD1 SER A 430 ASP A 440 1 11 HELIX 29 AD2 ASP A 440 GLN A 445 1 6 HELIX 30 AD3 ASN A 449 ALA A 456 1 8 HELIX 31 AD4 THR A 463 MET A 471 1 9 HELIX 32 AD5 SER A 475 MET A 479 5 5 HELIX 33 AD6 PHE A 486 LYS A 491 5 6 HELIX 34 AD7 SER B 23 ARG B 30 1 8 HELIX 35 AD8 HIS B 33 ASN B 37 5 5 HELIX 36 AD9 SER B 49 ARG B 59 1 11 HELIX 37 AE1 ASN B 68 PHE B 72 5 5 HELIX 38 AE2 VAL B 79 ARG B 104 1 26 HELIX 39 AE3 GLU B 105 VAL B 110 5 6 HELIX 40 AE4 GLY B 113 TYR B 122 1 10 HELIX 41 AE5 PRO B 124 ALA B 143 1 20 HELIX 42 AE6 ALA B 145 TYR B 177 1 33 HELIX 43 AE7 HIS B 185 GLU B 193 1 9 HELIX 44 AE8 GLU B 193 LEU B 207 1 15 HELIX 45 AE9 ASP B 211 VAL B 222 1 12 HELIX 46 AF1 VAL B 222 ILE B 231 1 10 HELIX 47 AF2 ILE B 231 ASN B 242 1 12 HELIX 48 AF3 THR B 245 LEU B 273 1 29 HELIX 49 AF4 GLU B 274 PRO B 276 5 3 HELIX 50 AF5 ASP B 277 SER B 305 1 29 HELIX 51 AF6 SER C 26 HIS C 37 1 12 HELIX 52 AF7 THR C 66 GLY C 71 1 6 HELIX 53 AF8 THR E 3 HIS E 10 1 8 HELIX 54 AF9 LEU E 23 ASN E 35 1 13 HELIX 55 AG1 ARG E 61 GLY E 69 1 9 HELIX 56 AG2 ASN E 73 ILE E 79 5 7 SHEET 1 AA1 2 PHE A 417 HIS A 421 0 SHEET 2 AA1 2 ARG A 424 PHE A 428 -1 O TYR A 426 N LEU A 419 SHEET 1 AA2 4 VAL C 16 ASP C 22 0 SHEET 2 AA2 4 ALA C 3 PHE C 10 -1 N ALA C 8 O GLN C 17 SHEET 3 AA2 4 VAL C 77 PHE C 82 1 O ILE C 78 N HIS C 7 SHEET 4 AA2 4 MET C 50 LYS C 54 -1 N ARG C 51 O VAL C 81 SHEET 1 AA3 4 THR E 41 ASP E 44 0 SHEET 2 AA3 4 TYR E 48 GLU E 54 -1 O ARG E 50 N GLU E 43 SHEET 3 AA3 4 ASN E 13 ARG E 19 -1 N VAL E 14 O ALA E 53 SHEET 4 AA3 4 LEU E 81 ALA E 85 -1 O SER E 83 N ILE E 17 SHEET 1 AA4 3 GLU E 56 THR E 60 0 SHEET 2 AA4 3 GLN E 94 TYR E 98 -1 O ILE E 95 N LEU E 59 SHEET 3 AA4 3 GLN E 87 ALA E 90 -1 N GLN E 87 O TYR E 98 LINK OE2 GLU A 104 FE FE A 501 1555 1555 2.08 LINK OE1 GLU A 134 FE FE A 501 1555 1555 2.13 LINK OE2 GLU A 134 FE FE A 502 1555 1555 2.16 LINK ND1 HIS A 137 FE FE A 501 1555 1555 2.19 LINK OE2 GLU A 197 FE FE A 502 1555 1555 1.98 LINK OE2 GLU A 231 FE FE A 502 1555 1555 1.99 LINK NE2 HIS A 234 FE FE A 502 1555 1555 2.25 LINK FE FE A 501 OH PCR A 503 1555 1555 2.35 LINK FE FE A 501 O HOH A 621 1555 1555 2.26 LINK FE FE A 501 O HOH A 661 1555 1555 2.22 LINK FE FE A 502 OH PCR A 503 1555 1555 2.26 LINK FE FE A 502 O HOH A 621 1555 1555 2.12 CISPEP 1 GLN A 460 PRO A 461 0 -2.22 SITE 1 AC1 7 GLU A 104 GLU A 134 HIS A 137 FE A 502 SITE 2 AC1 7 PCR A 503 HOH A 621 HOH A 661 SITE 1 AC2 7 GLU A 134 GLU A 197 GLU A 231 HIS A 234 SITE 2 AC2 7 FE A 501 PCR A 503 HOH A 621 SITE 1 AC3 9 GLU A 104 ALA A 107 GLU A 134 PHE A 176 SITE 2 AC3 9 GLU A 197 GLU A 231 FE A 501 FE A 502 SITE 3 AC3 9 HOH A 621 CRYST1 99.237 116.003 180.721 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005533 0.00000