HEADER SPLICING 21-SEP-16 5TEF TITLE CRYSTAL STRUCTURE OF GEMIN5 WD40 REPEATS IN COMPLEX WITH M7GPPPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEM-ASSOCIATED PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GEMIN5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GEMIN5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFBOH-LIC KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,H.HE,T.CEROVINA,A.SEITOVA,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 6 20-NOV-24 5TEF 1 REMARK REVDAT 5 03-APR-24 5TEF 1 REMARK REVDAT 4 21-DEC-22 5TEF 1 SEQADV REVDAT 3 10-MAY-17 5TEF 1 AUTHOR REVDAT 2 11-JAN-17 5TEF 1 JRNL REVDAT 1 19-OCT-16 5TEF 0 JRNL AUTH C.XU,H.ISHIKAWA,K.IZUMIKAWA,L.LI,H.HE,Y.NOBE,Y.YAMAUCHI, JRNL AUTH 2 H.M.SHAHJEE,X.H.WU,Y.T.YU,T.ISOBE,N.TAKAHASHI,J.MIN JRNL TITL STRUCTURAL INSIGHTS INTO GEMIN5-GUIDED SELECTION OF JRNL TITL 2 PRE-SNRNAS FOR SNRNP ASSEMBLY. JRNL REF GENES DEV. V. 30 2376 2016 JRNL REFN ISSN 1549-5477 JRNL PMID 27881600 JRNL DOI 10.1101/GAD.288340.116 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 52871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -3.16000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5444 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4916 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7451 ; 1.524 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11331 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 6.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;30.285 ;23.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 807 ;12.800 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6217 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1265 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2729 ; 3.317 ; 3.402 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2728 ; 3.317 ; 3.401 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3410 ; 4.677 ; 5.079 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 A NEARLY ISOMORPHOUS CRYSTAL STRUCTURE WAS USED AS THE SEARCH REMARK 3 MODEL FOR MOLECULAR REPLACEMENT. REMARK 3 MODEL COORDINATES WHERE TRANSFORMED WITH PDBSET TO FACILITATE REMARK 3 COMPARISON WITH OTHER, NEARLY ISOMORPHOUS GEMIN5 CRYSTAL REMARK 3 STRUCTURES. REMARK 3 RESTRAINTS FOR THE PARTIALLY RESOLVED GTG RESIDUE WERE PREPARED ON REMARK 3 THE GRADE SERVER. REMARK 3 NOT ALL EXPECTED ATOMS OF THE GTG LIGAND WERE RESOLVED IN THE REMARK 3 ELECTRON DENSITY. REMARK 3 SULFHYDRYL GROUPS OF SOME CYSTYL RESIDUE APPEAR CHEMICALLY REMARK 3 MODIFIED, BASED ON PEAKS IN THE ELECTRON DENSITY MAPS. REMARK 3 COOT WAS USED FOR INTERACTIVE MODEL BUILDING. REMARK 3 PHENIX.MOLPROBITY WAS USED FOR GEOMETRY VALIDATION. REMARK 4 REMARK 4 5TEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: "APO" GEMIN5 WD40 REPEATS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 SODIUM CITRATE, 0.0005-0.001 M M7GPPPG, PH 5.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.43100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS DID NOT SPECIFY THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 210 REMARK 465 CYS A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 ILE A 214 REMARK 465 ASN A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 217 REMARK 465 GLU A 218 REMARK 465 THR A 219 REMARK 465 SER A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 ALA A 223 REMARK 465 GLU A 224 REMARK 465 ILE A 225 REMARK 465 THR A 226 REMARK 465 ASN A 227 REMARK 465 GLY A 228 REMARK 465 ASN A 229 REMARK 465 ALA A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 GLN A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 VAL A 236 REMARK 465 THR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 SER A 316 REMARK 465 TRP A 317 REMARK 465 LEU A 487 REMARK 465 GLY A 488 REMARK 465 GLY A 489 REMARK 465 GLU A 490 REMARK 465 GLY A 491 REMARK 465 ASP A 492 REMARK 465 ARG A 493 REMARK 465 PRO A 494 REMARK 465 GLY A 723 REMARK 465 LYS A 724 REMARK 465 LYS A 725 REMARK 465 SER A 726 REMARK 465 ILE A 727 REMARK 465 GLU A 728 REMARK 465 LEU A 729 REMARK 465 GLU A 730 REMARK 465 LYS A 731 REMARK 465 LYS A 732 REMARK 465 ARG A 733 REMARK 465 LEU A 734 REMARK 465 SER A 735 REMARK 465 GLN A 736 REMARK 465 PRO A 737 REMARK 465 LYS A 738 REMARK 465 ALA A 739 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 ARG A 120 NH1 NH2 REMARK 470 GLN A 145 CD OE1 NE2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 GLU A 209 C O CB CG CD OE1 OE2 REMARK 470 SER A 257 OG REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 262 CG1 REMARK 470 LYS A 266 CE NZ REMARK 470 PHE A 269 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 THR A 280 OG1 CG2 REMARK 470 VAL A 281 CG1 CG2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 315 CG CD OE1 NE2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CD CE NZ REMARK 470 SER A 327 OG REMARK 470 SER A 328 OG REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 LYS A 349 CD CE NZ REMARK 470 GLU A 370 OE1 OE2 REMARK 470 LYS A 413 NZ REMARK 470 LYS A 419 CD CE NZ REMARK 470 LYS A 426 CD CE NZ REMARK 470 LYS A 438 CE NZ REMARK 470 ASN A 459 OD1 ND2 REMARK 470 LYS A 460 CE NZ REMARK 470 LYS A 470 CD CE NZ REMARK 470 SER A 486 C O CB OG REMARK 470 TRP A 513 CD2 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 LYS A 514 CD CE NZ REMARK 470 GLU A 518 CG CD OE1 OE2 REMARK 470 LYS A 524 CD CE NZ REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 LYS A 569 CE NZ REMARK 470 GLN A 593 CD OE1 NE2 REMARK 470 GLU A 595 CG CD OE1 OE2 REMARK 470 LYS A 615 NZ REMARK 470 GLU A 623 CG CD OE1 OE2 REMARK 470 GLU A 630 CG CD OE1 OE2 REMARK 470 GLN A 722 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -121.00 52.07 REMARK 500 ARG A 66 128.77 -36.19 REMARK 500 ASN A 142 73.33 33.03 REMARK 500 ILE A 149 -74.09 -103.73 REMARK 500 LYS A 183 51.09 -119.95 REMARK 500 GLU A 197 129.61 -37.49 REMARK 500 SER A 257 -70.80 -50.89 REMARK 500 MET A 263 123.47 -171.17 REMARK 500 GLU A 283 104.27 -160.47 REMARK 500 VAL A 425 -70.46 -101.77 REMARK 500 LYS A 426 -58.80 69.66 REMARK 500 CYS A 433 116.85 -162.51 REMARK 500 GLN A 576 -54.11 -146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GTG A 801 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TEE RELATED DB: PDB DBREF 5TEF A 1 739 UNP Q8TEQ6 GEMI5_HUMAN 1 739 SEQADV 5TEF MET A -18 UNP Q8TEQ6 INITIATING METHIONINE SEQADV 5TEF GLY A -17 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF SER A -16 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF SER A -15 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -14 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -13 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -12 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -11 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -10 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF HIS A -9 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF SER A -8 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF SER A -7 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF GLY A -6 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF LEU A -5 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF VAL A -4 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF PRO A -3 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF ARG A -2 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF GLY A -1 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF SER A 0 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEF GLN A 682 UNP Q8TEQ6 ARG 682 VARIANT SEQRES 1 A 758 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 758 LEU VAL PRO ARG GLY SER MET GLY GLN GLU PRO ARG THR SEQRES 3 A 758 LEU PRO PRO SER PRO ASN TRP TYR CYS ALA ARG CYS SER SEQRES 4 A 758 ASP ALA VAL PRO GLY GLY LEU PHE GLY PHE ALA ALA ARG SEQRES 5 A 758 THR SER VAL PHE LEU VAL ARG VAL GLY PRO GLY ALA GLY SEQRES 6 A 758 GLU SER PRO GLY THR PRO PRO PHE ARG VAL ILE GLY GLU SEQRES 7 A 758 LEU VAL GLY HIS THR GLU ARG VAL SER GLY PHE THR PHE SEQRES 8 A 758 SER HIS HIS PRO GLY GLN TYR ASN LEU CYS ALA THR SER SEQRES 9 A 758 SER ASP ASP GLY THR VAL LYS ILE TRP ASP VAL GLU THR SEQRES 10 A 758 LYS THR VAL VAL THR GLU HIS ALA LEU HIS GLN HIS THR SEQRES 11 A 758 ILE SER THR LEU HIS TRP SER PRO ARG VAL LYS ASP LEU SEQRES 12 A 758 ILE VAL SER GLY ASP GLU LYS GLY VAL VAL PHE CYS TYR SEQRES 13 A 758 TRP PHE ASN ARG ASN ASP SER GLN HIS LEU PHE ILE GLU SEQRES 14 A 758 PRO ARG THR ILE PHE CYS LEU THR CYS SER PRO HIS HIS SEQRES 15 A 758 GLU ASP LEU VAL ALA ILE GLY TYR LYS ASP GLY ILE VAL SEQRES 16 A 758 VAL ILE ILE ASP ILE SER LYS LYS GLY GLU VAL ILE HIS SEQRES 17 A 758 ARG LEU ARG GLY HIS ASP ASP GLU ILE HIS SER ILE ALA SEQRES 18 A 758 TRP CYS PRO LEU PRO GLY GLU ASP CYS LEU SER ILE ASN SEQRES 19 A 758 GLN GLU GLU THR SER GLU GLU ALA GLU ILE THR ASN GLY SEQRES 20 A 758 ASN ALA VAL ALA GLN ALA PRO VAL THR LYS GLY CYS TYR SEQRES 21 A 758 LEU ALA THR GLY SER LYS ASP GLN THR ILE ARG ILE TRP SEQRES 22 A 758 SER CYS SER ARG GLY ARG GLY VAL MET ILE LEU LYS LEU SEQRES 23 A 758 PRO PHE LEU LYS ARG ARG GLY GLY GLY ILE ASP PRO THR SEQRES 24 A 758 VAL LYS GLU ARG LEU TRP LEU THR LEU HIS TRP PRO SER SEQRES 25 A 758 ASN GLN PRO THR GLN LEU VAL SER SER CYS PHE GLY GLY SEQRES 26 A 758 GLU LEU LEU GLN TRP ASP LEU THR GLN SER TRP ARG ARG SEQRES 27 A 758 LYS TYR THR LEU PHE SER ALA SER SER GLU GLY GLN ASN SEQRES 28 A 758 HIS SER ARG ILE VAL PHE ASN LEU CYS PRO LEU GLN THR SEQRES 29 A 758 GLU ASP ASP LYS GLN LEU LEU LEU SER THR SER MET ASP SEQRES 30 A 758 ARG ASP VAL LYS CYS TRP ASP ILE ALA THR LEU GLU CYS SEQRES 31 A 758 SER TRP THR LEU PRO SER LEU GLY GLY PHE ALA TYR SER SEQRES 32 A 758 LEU ALA PHE SER SER VAL ASP ILE GLY SER LEU ALA ILE SEQRES 33 A 758 GLY VAL GLY ASP GLY MET ILE ARG VAL TRP ASN THR LEU SEQRES 34 A 758 SER ILE LYS ASN ASN TYR ASP VAL LYS ASN PHE TRP GLN SEQRES 35 A 758 GLY VAL LYS SER LYS VAL THR ALA LEU CYS TRP HIS PRO SEQRES 36 A 758 THR LYS GLU GLY CYS LEU ALA PHE GLY THR ASP ASP GLY SEQRES 37 A 758 LYS VAL GLY LEU TYR ASP THR TYR SER ASN LYS PRO PRO SEQRES 38 A 758 GLN ILE SER SER THR TYR HIS LYS LYS THR VAL TYR THR SEQRES 39 A 758 LEU ALA TRP GLY PRO PRO VAL PRO PRO MET SER LEU GLY SEQRES 40 A 758 GLY GLU GLY ASP ARG PRO SER LEU ALA LEU TYR SER CYS SEQRES 41 A 758 GLY GLY GLU GLY ILE VAL LEU GLN HIS ASN PRO TRP LYS SEQRES 42 A 758 LEU SER GLY GLU ALA PHE ASP ILE ASN LYS LEU ILE ARG SEQRES 43 A 758 ASP THR ASN SER ILE LYS TYR LYS LEU PRO VAL HIS THR SEQRES 44 A 758 GLU ILE SER TRP LYS ALA ASP GLY LYS ILE MET ALA LEU SEQRES 45 A 758 GLY ASN GLU ASP GLY SER ILE GLU ILE PHE GLN ILE PRO SEQRES 46 A 758 ASN LEU LYS LEU ILE CYS THR ILE GLN GLN HIS HIS LYS SEQRES 47 A 758 LEU VAL ASN THR ILE SER TRP HIS HIS GLU HIS GLY SER SEQRES 48 A 758 GLN PRO GLU LEU SER TYR LEU MET ALA SER GLY SER ASN SEQRES 49 A 758 ASN ALA VAL ILE TYR VAL HIS ASN LEU LYS THR VAL ILE SEQRES 50 A 758 GLU SER SER PRO GLU SER PRO VAL THR ILE THR GLU PRO SEQRES 51 A 758 TYR ARG THR LEU SER GLY HIS THR ALA LYS ILE THR SER SEQRES 52 A 758 VAL ALA TRP SER PRO HIS HIS ASP GLY ARG LEU VAL SER SEQRES 53 A 758 ALA SER TYR ASP GLY THR ALA GLN VAL TRP ASP ALA LEU SEQRES 54 A 758 ARG GLU GLU PRO LEU CYS ASN PHE ARG GLY HIS GLN GLY SEQRES 55 A 758 ARG LEU LEU CYS VAL ALA TRP SER PRO LEU ASP PRO ASP SEQRES 56 A 758 CYS ILE TYR SER GLY ALA ASP ASP PHE CYS VAL HIS LYS SEQRES 57 A 758 TRP LEU THR SER MET GLN ASP HIS SER ARG PRO PRO GLN SEQRES 58 A 758 GLY LYS LYS SER ILE GLU LEU GLU LYS LYS ARG LEU SER SEQRES 59 A 758 GLN PRO LYS ALA HET GTG A 801 33 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET UNX A 805 1 HET UNX A 806 1 HET UNX A 807 1 HET UNX A 808 1 HET UNX A 809 1 HET UNX A 810 1 HET UNX A 811 1 HET UNX A 812 1 HET UNX A 813 1 HET UNX A 814 1 HET UNX A 815 1 HET UNX A 816 1 HET UNX A 817 1 HET UNX A 818 1 HET UNX A 819 1 HET UNX A 820 1 HET UNX A 821 1 HET UNX A 822 1 HET UNX A 823 1 HETNAM GTG 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE HETNAM GOL GLYCEROL HETNAM UNX UNKNOWN ATOM OR ION HETSYN GTG MRNA CAP ANALOG N7-METHYL GPPPG HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GTG C21 H30 N10 O18 P3 1+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 UNX 19(X) FORMUL 25 HOH *178(H2 O) HELIX 1 AA1 PRO A 43 GLY A 46 5 4 HELIX 2 AA2 PHE A 304 GLY A 306 5 3 HELIX 3 AA3 ILE A 522 SER A 531 1 10 HELIX 4 AA4 GLN A 593 SER A 597 5 5 HELIX 5 AA5 LEU A 614 SER A 621 1 8 HELIX 6 AA6 SER A 713 GLN A 715 5 3 SHEET 1 AA1 4 ARG A 6 LEU A 8 0 SHEET 2 AA1 4 VAL A 707 LEU A 711 -1 O LYS A 709 N ARG A 6 SHEET 3 AA1 4 CYS A 697 ALA A 702 -1 N ILE A 698 O TRP A 710 SHEET 4 AA1 4 LEU A 685 TRP A 690 -1 N ALA A 689 O TYR A 699 SHEET 1 AA2 4 SER A 20 VAL A 23 0 SHEET 2 AA2 4 LEU A 27 ALA A 32 -1 O GLY A 29 N ASP A 21 SHEET 3 AA2 4 SER A 35 VAL A 41 -1 O VAL A 39 N PHE A 28 SHEET 4 AA2 4 PHE A 54 LEU A 60 -1 O GLY A 58 N LEU A 38 SHEET 1 AA3 4 VAL A 67 PHE A 72 0 SHEET 2 AA3 4 LEU A 81 SER A 86 -1 O ALA A 83 N THR A 71 SHEET 3 AA3 4 VAL A 91 ASP A 95 -1 O TRP A 94 N CYS A 82 SHEET 4 AA3 4 THR A 100 HIS A 105 -1 O VAL A 102 N ILE A 93 SHEET 1 AA4 4 ILE A 112 TRP A 117 0 SHEET 2 AA4 4 LEU A 124 ASP A 129 -1 O GLY A 128 N SER A 113 SHEET 3 AA4 4 VAL A 133 TRP A 138 -1 O TYR A 137 N ILE A 125 SHEET 4 AA4 4 ASP A 143 PHE A 148 -1 O GLN A 145 N CYS A 136 SHEET 1 AA5 4 ILE A 154 CYS A 159 0 SHEET 2 AA5 4 LEU A 166 TYR A 171 -1 O ALA A 168 N THR A 158 SHEET 3 AA5 4 VAL A 176 ASP A 180 -1 O ILE A 179 N VAL A 167 SHEET 4 AA5 4 VAL A 187 LEU A 191 -1 O ILE A 188 N ILE A 178 SHEET 1 AA6 4 ILE A 198 TRP A 203 0 SHEET 2 AA6 4 TYR A 241 SER A 246 -1 O ALA A 243 N ALA A 202 SHEET 3 AA6 4 THR A 250 SER A 255 -1 O TRP A 254 N LEU A 242 SHEET 4 AA6 4 GLY A 261 LYS A 266 -1 O LEU A 265 N ILE A 251 SHEET 1 AA7 4 LEU A 289 HIS A 290 0 SHEET 2 AA7 4 GLN A 298 SER A 302 -1 O VAL A 300 N HIS A 290 SHEET 3 AA7 4 LEU A 308 ASP A 312 -1 O TRP A 311 N LEU A 299 SHEET 4 AA7 4 LYS A 320 LEU A 323 -1 O THR A 322 N GLN A 310 SHEET 1 AA8 4 VAL A 337 GLN A 344 0 SHEET 2 AA8 4 GLN A 350 SER A 356 -1 O LEU A 351 N LEU A 343 SHEET 3 AA8 4 ASP A 360 ASP A 365 -1 O TRP A 364 N LEU A 352 SHEET 4 AA8 4 GLU A 370 PRO A 376 -1 O LEU A 375 N VAL A 361 SHEET 1 AA9 4 ALA A 382 PHE A 387 0 SHEET 2 AA9 4 SER A 394 VAL A 399 -1 O ALA A 396 N ALA A 386 SHEET 3 AA9 4 ILE A 404 ASN A 408 -1 O TRP A 407 N LEU A 395 SHEET 4 AA9 4 VAL A 418 PHE A 421 -1 O PHE A 421 N ILE A 404 SHEET 1 AB1 4 VAL A 429 TRP A 434 0 SHEET 2 AB1 4 CYS A 441 THR A 446 -1 O GLY A 445 N ALA A 431 SHEET 3 AB1 4 VAL A 451 ASP A 455 -1 O TYR A 454 N LEU A 442 SHEET 4 AB1 4 GLN A 463 ILE A 464 -1 O GLN A 463 N LEU A 453 SHEET 1 AB2 4 VAL A 473 GLY A 479 0 SHEET 2 AB2 4 ALA A 497 GLY A 502 -1 O TYR A 499 N ALA A 477 SHEET 3 AB2 4 VAL A 507 HIS A 510 -1 O HIS A 510 N LEU A 498 SHEET 4 AB2 4 ALA A 519 ASP A 521 -1 O PHE A 520 N GLN A 509 SHEET 1 AB3 5 HIS A 539 TRP A 544 0 SHEET 2 AB3 5 ILE A 550 ASN A 555 -1 O ALA A 552 N SER A 543 SHEET 3 AB3 5 ILE A 560 GLN A 564 -1 O PHE A 563 N MET A 551 SHEET 4 AB3 5 LYS A 569 ILE A 574 -1 O ILE A 574 N ILE A 560 SHEET 5 AB3 5 VAL A 626 ILE A 628 1 O ILE A 628 N THR A 573 SHEET 1 AB4 4 VAL A 581 TRP A 586 0 SHEET 2 AB4 4 LEU A 599 SER A 604 -1 O ALA A 601 N SER A 585 SHEET 3 AB4 4 ILE A 609 ASN A 613 -1 O HIS A 612 N MET A 600 SHEET 4 AB4 4 ARG A 633 LEU A 635 -1 O LEU A 635 N ILE A 609 SHEET 1 AB5 4 ILE A 642 TRP A 647 0 SHEET 2 AB5 4 ARG A 654 SER A 659 -1 O VAL A 656 N ALA A 646 SHEET 3 AB5 4 ALA A 664 ASP A 668 -1 O TRP A 667 N LEU A 655 SHEET 4 AB5 4 GLU A 673 PHE A 678 -1 O GLU A 673 N ASP A 668 SSBOND 1 CYS A 240 CYS A 256 1555 1555 2.04 CISPEP 1 GLY A 25 GLY A 26 0 7.02 CISPEP 2 PRO A 483 PRO A 484 0 9.03 CISPEP 3 ILE A 565 PRO A 566 0 11.15 SITE 1 AC1 10 TYR A 474 THR A 540 GLU A 541 ASN A 582 SITE 2 AC1 10 LYS A 641 THR A 643 TYR A 660 ARG A 684 SITE 3 AC1 10 HOH A 996 HOH A1003 SITE 1 AC2 5 PRO A 12 ASN A 13 TRP A 14 ARG A 359 SITE 2 AC2 5 HOH A 935 SITE 1 AC3 6 TYR A 15 SER A 113 PHE A 155 HOH A 967 SITE 2 AC3 6 HOH A 976 HOH A 978 SITE 1 AC4 4 SER A 293 ASN A 294 PRO A 342 GLN A 350 CRYST1 58.658 124.862 60.938 90.00 117.52 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017048 0.000000 0.008883 0.00000 SCALE2 0.000000 0.008009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018504 0.00000