HEADER PROTEIN TRANSPORT 27-SEP-16 5TGH TITLE STRUCTURE OF THE SNX5 PX DOMAIN IN COMPLEX WITH CHLAMYDIAL PROTEIN TITLE 2 INCE IN SPACE GROUP P32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-5; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: UNP RESIDUES 22-170; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INCE; COMPND 8 CHAIN: B, D, F, H; COMPND 9 FRAGMENT: UNP RESIDUES 110-132; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 10 ORGANISM_TAXID: 813; SOURCE 11 GENE: INCE; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOST-PATHOGEN ENDOSOME, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.COLLINS,B.PAUL REVDAT 8 23-OCT-24 5TGH 1 REMARK REVDAT 7 04-OCT-23 5TGH 1 REMARK REVDAT 6 01-JAN-20 5TGH 1 REMARK REVDAT 5 28-MAR-18 5TGH 1 JRNL REVDAT 4 28-FEB-18 5TGH 1 JRNL REVDAT 3 17-JAN-18 5TGH 1 REMARK REVDAT 2 27-SEP-17 5TGH 1 REMARK REVDAT 1 03-MAY-17 5TGH 0 JRNL AUTH B.PAUL,H.S.KIM,M.C.KERR,W.M.HUSTON,R.D.TEASDALE,B.M.COLLINS JRNL TITL STRUCTURAL BASIS FOR THE HIJACKING OF ENDOSOMAL SORTING JRNL TITL 2 NEXIN PROTEINS BYCHLAMYDIA TRACHOMATIS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28226239 JRNL DOI 10.7554/ELIFE.22311 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1837 - 6.7394 1.00 1281 134 0.2010 0.2194 REMARK 3 2 6.7394 - 5.3530 1.00 1296 142 0.2328 0.2413 REMARK 3 3 5.3530 - 4.6774 1.00 1292 146 0.2033 0.2010 REMARK 3 4 4.6774 - 4.2502 1.00 1250 141 0.1946 0.2204 REMARK 3 5 4.2502 - 3.9459 1.00 1310 140 0.2109 0.2616 REMARK 3 6 3.9459 - 3.7134 1.00 1286 134 0.2299 0.2273 REMARK 3 7 3.7134 - 3.5275 1.00 1270 156 0.2452 0.2646 REMARK 3 8 3.5275 - 3.3740 1.00 1296 144 0.2619 0.2828 REMARK 3 9 3.3740 - 3.2442 1.00 1244 136 0.2756 0.2694 REMARK 3 10 3.2442 - 3.1323 1.00 1315 137 0.2836 0.3230 REMARK 3 11 3.1323 - 3.0344 1.00 1315 136 0.3033 0.3030 REMARK 3 12 3.0344 - 2.9477 1.00 1283 142 0.2893 0.3219 REMARK 3 13 2.9477 - 2.8701 1.00 1265 140 0.3166 0.3312 REMARK 3 14 2.8701 - 2.8001 1.00 1301 144 0.3251 0.3798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5313 REMARK 3 ANGLE : 1.280 7168 REMARK 3 CHIRALITY : 0.089 804 REMARK 3 PLANARITY : 0.012 919 REMARK 3 DIHEDRAL : 21.672 1983 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 M (NH4)2SO4, ACETATE (PH 4.5), REMARK 280 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.88333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 ALA A 172 REMARK 465 ASN B 110 REMARK 465 GLY B 111 REMARK 465 GLY C 21 REMARK 465 SER C 22 REMARK 465 VAL C 23 REMARK 465 ASP C 24 REMARK 465 LEU C 25 REMARK 465 ASN C 26 REMARK 465 VAL C 27 REMARK 465 ASP C 28 REMARK 465 PRO C 29 REMARK 465 ALA C 172 REMARK 465 ASN D 110 REMARK 465 GLY D 111 REMARK 465 GLY E 21 REMARK 465 SER E 22 REMARK 465 VAL E 23 REMARK 465 ASP E 24 REMARK 465 LEU E 25 REMARK 465 ASN E 26 REMARK 465 VAL E 27 REMARK 465 ASP E 28 REMARK 465 PRO E 29 REMARK 465 ASN F 110 REMARK 465 GLY F 111 REMARK 465 GLN F 132 REMARK 465 GLY G 21 REMARK 465 SER G 22 REMARK 465 VAL G 23 REMARK 465 ASP G 24 REMARK 465 LEU G 25 REMARK 465 ASN G 26 REMARK 465 VAL G 27 REMARK 465 ASP G 28 REMARK 465 PRO G 29 REMARK 465 ASN H 110 REMARK 465 GLY H 111 REMARK 465 GLN H 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 NH1 NH2 REMARK 470 ARG A 67 NH1 NH2 REMARK 470 TRP A 74 CH2 REMARK 470 TYR A 85 OH REMARK 470 ARG A 103 NH1 NH2 REMARK 470 TYR A 132 OH REMARK 470 ARG A 149 NH1 NH2 REMARK 470 ARG A 160 NH1 NH2 REMARK 470 TYR A 168 OH REMARK 470 ARG C 42 NH1 NH2 REMARK 470 ARG C 67 NH1 NH2 REMARK 470 TRP C 74 CH2 REMARK 470 TYR C 85 OH REMARK 470 ARG C 103 NH1 NH2 REMARK 470 TYR C 132 OH REMARK 470 ARG C 149 NH1 NH2 REMARK 470 ARG C 160 NH1 NH2 REMARK 470 TYR C 168 OH REMARK 470 ARG E 42 NH1 NH2 REMARK 470 ARG E 67 NH1 NH2 REMARK 470 TRP E 74 CH2 REMARK 470 TYR E 85 OH REMARK 470 ARG E 103 NH1 NH2 REMARK 470 TYR E 132 OH REMARK 470 ARG E 149 NH1 NH2 REMARK 470 ARG E 160 NH1 NH2 REMARK 470 TYR E 168 OH REMARK 470 ARG G 42 NH1 NH2 REMARK 470 ARG G 67 NH1 NH2 REMARK 470 TRP G 74 CH2 REMARK 470 TYR G 85 OH REMARK 470 ARG G 103 NH1 NH2 REMARK 470 TYR G 132 OH REMARK 470 ARG G 149 NH1 NH2 REMARK 470 ARG G 160 NH1 NH2 REMARK 470 TYR G 168 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS G 105 OE1 GLU G 131 1.11 REMARK 500 O LYS H 120 OG SER H 123 1.30 REMARK 500 O HIS E 153 OG SER E 157 1.32 REMARK 500 O HIS A 153 OG SER A 157 1.33 REMARK 500 O VAL G 73 OD1 ASP G 77 1.34 REMARK 500 O LYS B 120 OG SER B 123 1.35 REMARK 500 N LYS H 120 OG SER H 123 1.66 REMARK 500 O TRP E 74 OG1 THR E 78 1.72 REMARK 500 CA LYS H 120 OG SER H 123 1.72 REMARK 500 OE1 GLN G 170 CD PRO G 171 1.75 REMARK 500 O GLU G 167 OD1 ASP G 169 1.77 REMARK 500 O HIS C 153 OG SER C 157 1.77 REMARK 500 C GLY H 119 CB SER H 123 1.78 REMARK 500 C GLY H 119 OG SER H 123 1.81 REMARK 500 O TRP G 74 OG1 THR G 78 1.81 REMARK 500 O LYS B 120 N SER B 123 1.89 REMARK 500 O HIS G 153 OG SER G 157 1.91 REMARK 500 CB LYS A 105 NZ LYS A 108 1.92 REMARK 500 OD1 ASN C 161 NE2 GLN E 59 1.92 REMARK 500 O LYS D 120 OG SER D 123 1.93 REMARK 500 O LYS H 120 CB SER H 123 1.93 REMARK 500 CA LYS A 105 NZ LYS A 108 2.00 REMARK 500 N SER G 30 OG1 THR G 54 2.00 REMARK 500 C LYS B 120 OG SER B 123 2.01 REMARK 500 O GLY H 119 OG SER H 123 2.02 REMARK 500 CG ARG C 42 OE1 GLN D 132 2.05 REMARK 500 N LYS H 120 CB SER H 123 2.09 REMARK 500 O LYS H 120 N SER H 123 2.11 REMARK 500 CD ARG A 42 OE1 GLN B 132 2.12 REMARK 500 OE2 GLU A 144 NZ LYS B 118 2.14 REMARK 500 N LYS B 120 OG SER B 123 2.18 REMARK 500 CA GLY H 119 CB SER H 123 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 ILE C 89 NZ LYS C 108 2674 1.94 REMARK 500 O GLY E 87 OE1 GLU E 120 3474 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 42 -96.93 65.03 REMARK 500 THR B 131 106.47 109.90 REMARK 500 ASP C 43 -50.47 78.55 REMARK 500 ARG E 42 -119.98 57.04 REMARK 500 GLN E 170 -138.95 -57.92 REMARK 500 PRO E 171 154.03 -40.28 REMARK 500 ARG G 42 -111.00 -0.11 REMARK 500 LEU G 109 -26.59 -35.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TGJ RELATED DB: PDB REMARK 900 RELATED ID: 5TGI RELATED DB: PDB DBREF 5TGH A 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGH B 110 132 UNP B7SCI5 B7SCI5_CHLTH 110 132 DBREF 5TGH C 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGH D 110 132 UNP B7SCI5 B7SCI5_CHLTH 110 132 DBREF 5TGH E 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGH F 110 132 UNP B7SCI5 B7SCI5_CHLTH 110 132 DBREF 5TGH G 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGH H 110 132 UNP B7SCI5 B7SCI5_CHLTH 110 132 SEQADV 5TGH GLY A 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH PRO A 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH ALA A 172 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH GLY C 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH PRO C 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH ALA C 172 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH GLY E 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH PRO E 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH ALA E 172 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH GLY G 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH PRO G 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGH ALA G 172 UNP Q9Y5X3 EXPRESSION TAG SEQRES 1 A 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 A 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 A 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 A 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 A 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 A 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 A 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 A 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 A 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 A 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 A 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 A 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 B 23 ASN GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SEQRES 2 B 23 SER ALA ASP GLN VAL ILE LEU VAL THR GLN SEQRES 1 C 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 C 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 C 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 C 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 C 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 C 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 C 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 C 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 C 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 C 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 C 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 C 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 D 23 ASN GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SEQRES 2 D 23 SER ALA ASP GLN VAL ILE LEU VAL THR GLN SEQRES 1 E 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 E 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 E 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 E 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 E 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 E 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 E 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 E 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 E 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 E 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 E 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 E 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 F 23 ASN GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SEQRES 2 F 23 SER ALA ASP GLN VAL ILE LEU VAL THR GLN SEQRES 1 G 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 G 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 G 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 G 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 G 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 G 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 G 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 G 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 G 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 G 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 G 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 G 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 H 23 ASN GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SEQRES 2 H 23 SER ALA ASP GLN VAL ILE LEU VAL THR GLN FORMUL 9 HOH *(H2 O) HELIX 1 AA1 HIS A 69 THR A 82 1 14 HELIX 2 AA2 THR A 83 ALA A 86 5 4 HELIX 3 AA3 PHE A 99 GLY A 112 1 14 HELIX 4 AA4 THR A 117 HIS A 153 1 37 HELIX 5 AA5 VAL A 155 LYS A 158 5 4 HELIX 6 AA6 ASP A 159 TYR A 168 1 10 HELIX 7 AA7 HIS C 69 GLU C 81 1 13 HELIX 8 AA8 THR C 82 ALA C 86 5 5 HELIX 9 AA9 PHE C 99 GLY C 112 1 14 HELIX 10 AB1 THR C 117 HIS C 153 1 37 HELIX 11 AB2 VAL C 155 LYS C 158 5 4 HELIX 12 AB3 ASP C 159 TYR C 168 1 10 HELIX 13 AB4 HIS E 69 THR E 82 1 14 HELIX 14 AB5 THR E 83 ALA E 86 5 4 HELIX 15 AB6 PHE E 99 GLY E 110 1 12 HELIX 16 AB7 THR E 117 HIS E 153 1 37 HELIX 17 AB8 VAL E 155 LYS E 158 5 4 HELIX 18 AB9 ASP E 159 TYR E 168 1 10 HELIX 19 AC1 HIS G 69 THR G 82 1 14 HELIX 20 AC2 PHE G 99 GLY G 112 1 14 HELIX 21 AC3 THR G 117 HIS G 153 1 37 HELIX 22 AC4 HIS G 153 LYS G 158 1 6 HELIX 23 AC5 ASP G 159 TYR G 168 1 10 SHEET 1 AA1 5 GLU A 62 GLN A 68 0 SHEET 2 AA1 5 LYS A 44 THR A 53 -1 N PHE A 47 O ARG A 67 SHEET 3 AA1 5 LEU A 31 GLU A 41 -1 N GLN A 32 O LYS A 52 SHEET 4 AA1 5 ALA B 113 PHE B 117 -1 O VAL B 114 N SER A 40 SHEET 5 AA1 5 GLN B 126 LEU B 129 -1 O ILE B 128 N GLN B 115 SHEET 1 AA2 3 LEU C 31 ASP C 34 0 SHEET 2 AA2 3 LYS C 44 THR C 53 -1 O LYS C 52 N GLN C 32 SHEET 3 AA2 3 GLU C 62 GLN C 68 -1 O VAL C 65 N VAL C 49 SHEET 1 AA3 5 LEU C 31 ASP C 34 0 SHEET 2 AA3 5 LYS C 44 THR C 53 -1 O LYS C 52 N GLN C 32 SHEET 3 AA3 5 ASP C 37 GLU C 41 -1 N GLU C 41 O LYS C 44 SHEET 4 AA3 5 ALA D 113 PHE D 117 -1 O VAL D 114 N SER C 40 SHEET 5 AA3 5 GLN D 126 VAL D 130 -1 O VAL D 130 N ALA D 113 SHEET 1 AA4 3 LEU E 31 ASP E 34 0 SHEET 2 AA4 3 LYS E 44 THR E 53 -1 O LYS E 52 N GLN E 32 SHEET 3 AA4 3 GLU E 62 GLN E 68 -1 O PHE E 63 N THR E 51 SHEET 1 AA5 5 LEU E 31 ASP E 34 0 SHEET 2 AA5 5 LYS E 44 THR E 53 -1 O LYS E 52 N GLN E 32 SHEET 3 AA5 5 ASP E 37 GLU E 41 -1 N GLU E 41 O LYS E 44 SHEET 4 AA5 5 ALA F 113 PHE F 117 -1 O PHE F 116 N ALA E 38 SHEET 5 AA5 5 GLN F 126 VAL F 130 -1 O VAL F 130 N ALA F 113 SHEET 1 AA6 3 GLN G 32 ASP G 34 0 SHEET 2 AA6 3 VAL G 45 LYS G 52 -1 O HIS G 50 N ASP G 34 SHEET 3 AA6 3 GLU G 62 GLN G 68 -1 O ARG G 67 N PHE G 47 SHEET 1 AA7 5 GLN G 32 ASP G 34 0 SHEET 2 AA7 5 VAL G 45 LYS G 52 -1 O HIS G 50 N ASP G 34 SHEET 3 AA7 5 ASP G 37 SER G 40 -1 N LEU G 39 O LYS G 46 SHEET 4 AA7 5 ALA H 113 PHE H 117 -1 O VAL H 114 N SER G 40 SHEET 5 AA7 5 GLN H 126 VAL H 130 -1 O GLN H 126 N PHE H 117 LINK C LYS H 120 OG SER H 123 1555 1555 1.18 CISPEP 1 ASN B 121 GLY B 122 0 5.93 CISPEP 2 ASN D 121 GLY D 122 0 4.73 CISPEP 3 ASN F 121 GLY F 122 0 0.40 CISPEP 4 GLN G 170 PRO G 171 0 -3.87 CISPEP 5 ASN H 121 GLY H 122 0 -6.00 CRYST1 100.640 100.640 71.650 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009936 0.005737 0.000000 0.00000 SCALE2 0.000000 0.011474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013957 0.00000