HEADER PROTEIN TRANSPORT 28-SEP-16 5TGI TITLE STRUCTURE OF THE SNX5 PX DOMAIN IN COMPLEX WITH CHLAMYDIAL PROTEIN TITLE 2 INCE IN SPACE GROUP P212121 CAVEAT 5TGI RESIDUES ARG A103 AND GLU A104 THAT ARE NEXT TO EACH OTHER CAVEAT 2 5TGI IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 5TGI BETWEEN C AND N IS 0.81. RESIDUES GLU A104 AND LYS A105 CAVEAT 4 5TGI THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 5 5TGI PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 1.17. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-170; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INCE; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: UNP RESIDUES 111-132; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 10 ORGANISM_TAXID: 813; SOURCE 11 GENE: INCE; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOST-PATHOGEN ENDOSOME, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.COLLINS,B.PAUL REVDAT 5 09-OCT-24 5TGI 1 REMARK REVDAT 4 01-JAN-20 5TGI 1 REMARK REVDAT 3 17-JAN-18 5TGI 1 REMARK REVDAT 2 27-SEP-17 5TGI 1 REMARK REVDAT 1 28-JUN-17 5TGI 0 JRNL AUTH B.COLLINS,B.PAUL JRNL TITL STRUCTURE OF THE SNX5 PX DOMAIN IN COMPLEX WITH CHLAMYDIAL JRNL TITL 2 PROTEIN INCE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1627 - 4.7631 1.00 1850 155 0.1987 0.2304 REMARK 3 2 4.7631 - 3.7812 1.00 1754 146 0.1586 0.1994 REMARK 3 3 3.7812 - 3.3034 1.00 1745 144 0.1621 0.2073 REMARK 3 4 3.3034 - 3.0015 1.00 1718 143 0.1854 0.2184 REMARK 3 5 3.0015 - 2.7864 1.00 1709 143 0.1831 0.2276 REMARK 3 6 2.7864 - 2.6221 1.00 1709 142 0.1816 0.2357 REMARK 3 7 2.6221 - 2.4908 1.00 1702 142 0.1889 0.2262 REMARK 3 8 2.4908 - 2.3824 1.00 1697 142 0.1919 0.2337 REMARK 3 9 2.3824 - 2.2907 1.00 1710 142 0.1822 0.2237 REMARK 3 10 2.2907 - 2.2116 1.00 1692 141 0.1827 0.2536 REMARK 3 11 2.2116 - 2.1425 1.00 1690 140 0.1873 0.2338 REMARK 3 12 2.1425 - 2.0812 1.00 1686 140 0.1813 0.2731 REMARK 3 13 2.0812 - 2.0264 1.00 1669 139 0.1985 0.2599 REMARK 3 14 2.0264 - 1.9770 1.00 1690 141 0.2078 0.2726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2640 REMARK 3 ANGLE : 1.305 3567 REMARK 3 CHIRALITY : 0.064 396 REMARK 3 PLANARITY : 0.008 460 REMARK 3 DIHEDRAL : 15.853 1599 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -1.3472 26.5329 -19.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0863 REMARK 3 T33: 0.0846 T12: 0.0263 REMARK 3 T13: 0.0028 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1323 L22: 0.2089 REMARK 3 L33: 0.1799 L12: 0.0439 REMARK 3 L13: 0.1117 L23: -0.1026 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.0408 S13: -0.0404 REMARK 3 S21: -0.0024 S22: -0.0162 S23: 0.0175 REMARK 3 S31: 0.0088 S32: 0.0136 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 60.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KSCN, 25% PEG 2K MME, 100 MM REMARK 280 SODIUM ACETATE (PH 5.5), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 GLN A 170 REMARK 465 PRO A 171 REMARK 465 ALA A 172 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 VAL B 23 REMARK 465 ASP B 24 REMARK 465 LEU B 25 REMARK 465 ASN B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 PRO B 29 REMARK 465 GLN B 170 REMARK 465 PRO B 171 REMARK 465 ALA B 172 REMARK 465 GLY C 111 REMARK 465 PRO C 112 REMARK 465 GLY D 111 REMARK 465 GLN D 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 113 HE2 PHE A 121 1.01 REMARK 500 O GLY A 112 HZ PHE A 121 1.07 REMARK 500 C ARG A 103 H GLU A 104 1.25 REMARK 500 OE1 GLU B 120 HB3 LYS B 123 1.39 REMARK 500 HB2 LYS A 118 OE1 GLU B 119 1.43 REMARK 500 O MET B 116 HG1 THR B 117 1.44 REMARK 500 C GLU A 113 HE2 PHE A 121 1.50 REMARK 500 OE2 GLU A 119 HD3 LYS B 118 1.50 REMARK 500 OG SER A 115 HZ PHE A 121 1.51 REMARK 500 HE22 GLN B 126 O HOH B 202 1.53 REMARK 500 HH22 ARG B 67 O TYR B 168 1.56 REMARK 500 HE21 GLN C 126 O HOH D 201 1.57 REMARK 500 O GLY A 112 CE1 PHE A 121 1.58 REMARK 500 OE2 GLU A 119 HD2 LYS B 118 1.60 REMARK 500 O ARG A 103 N GLU A 104 1.64 REMARK 500 O HOH A 234 O HOH A 257 1.85 REMARK 500 O HOH B 307 O HOH B 308 1.85 REMARK 500 O GLU A 113 CE2 PHE A 121 1.85 REMARK 500 OE2 GLU A 119 CD LYS B 118 1.89 REMARK 500 OG1 THR D 131 O HOH D 201 1.89 REMARK 500 O GLY A 112 OG SER A 115 1.89 REMARK 500 O HOH A 317 O HOH A 319 1.91 REMARK 500 OE2 GLU B 113 O HOH B 201 1.97 REMARK 500 O HOH B 248 O HOH B 266 1.98 REMARK 500 O HOH B 290 O HOH B 312 2.04 REMARK 500 O HOH A 273 O HOH A 274 2.07 REMARK 500 N ALA C 113 O HOH C 201 2.07 REMARK 500 O HOH A 212 O HOH A 297 2.08 REMARK 500 OG1 THR A 117 N PHE A 121 2.09 REMARK 500 O HOH A 307 O HOH A 311 2.14 REMARK 500 O THR D 131 O HOH D 202 2.16 REMARK 500 OG SER A 115 CZ PHE A 121 2.16 REMARK 500 O HOH A 224 O HOH A 295 2.17 REMARK 500 C GLU A 113 CE2 PHE A 121 2.17 REMARK 500 O HOH A 308 O HOH A 310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 300 O HOH B 310 2465 1.97 REMARK 500 O HOH A 219 O HOH B 223 2465 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 103 C GLU A 104 N -0.527 REMARK 500 GLU A 104 C LYS A 105 N -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 30 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 103 CA - C - N ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 103 O - C - N ANGL. DEV. = -18.7 DEGREES REMARK 500 GLU A 104 C - N - CA ANGL. DEV. = 25.7 DEGREES REMARK 500 THR A 117 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 LYS A 118 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 GLY C 122 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 101.94 -167.88 REMARK 500 GLU A 104 -70.14 -75.95 REMARK 500 SER A 115 59.80 -105.75 REMARK 500 MET A 116 -26.75 80.88 REMARK 500 LYS A 118 -86.80 14.67 REMARK 500 ARG B 42 -123.65 49.88 REMARK 500 GLU B 111 89.31 133.51 REMARK 500 GLU B 113 33.78 108.81 REMARK 500 SER B 115 131.92 2.80 REMARK 500 MET B 116 128.06 64.03 REMARK 500 THR B 117 156.76 77.89 REMARK 500 GLU B 119 17.63 -60.64 REMARK 500 GLU B 120 141.58 167.53 REMARK 500 PHE B 121 -64.82 77.96 REMARK 500 SER C 123 120.83 66.06 REMARK 500 ALA C 124 94.52 112.53 REMARK 500 ASN D 121 76.94 45.27 REMARK 500 SER D 123 -136.67 51.22 REMARK 500 ALA D 124 95.01 94.11 REMARK 500 VAL D 130 149.99 98.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 116 THR B 117 -148.23 REMARK 500 GLU B 119 GLU B 120 -147.46 REMARK 500 GLU B 120 PHE B 121 -125.83 REMARK 500 SER C 123 ALA C 124 58.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 30 -10.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TGH RELATED DB: PDB REMARK 900 RELATED ID: 5TGJ RELATED DB: PDB DBREF 5TGI A 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGI B 22 170 UNP Q9Y5X3 SNX5_HUMAN 22 170 DBREF 5TGI C 111 132 UNP B7SCI5 B7SCI5_CHLTH 111 132 DBREF 5TGI D 111 132 UNP B7SCI5 B7SCI5_CHLTH 111 132 SEQADV 5TGI GLY A 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGI PRO A 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGI ALA A 172 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGI GLY B 21 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGI PRO B 171 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5TGI ALA B 172 UNP Q9Y5X3 EXPRESSION TAG SEQRES 1 A 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 A 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 A 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 A 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 A 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 A 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 A 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 A 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 A 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 A 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 A 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 A 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 B 152 GLY SER VAL ASP LEU ASN VAL ASP PRO SER LEU GLN ILE SEQRES 2 B 152 ASP ILE PRO ASP ALA LEU SER GLU ARG ASP LYS VAL LYS SEQRES 3 B 152 PHE THR VAL HIS THR LYS THR THR LEU PRO THR PHE GLN SEQRES 4 B 152 SER PRO GLU PHE SER VAL THR ARG GLN HIS GLU ASP PHE SEQRES 5 B 152 VAL TRP LEU HIS ASP THR LEU ILE GLU THR THR ASP TYR SEQRES 6 B 152 ALA GLY LEU ILE ILE PRO PRO ALA PRO THR LYS PRO ASP SEQRES 7 B 152 PHE ASP GLY PRO ARG GLU LYS MET GLN LYS LEU GLY GLU SEQRES 8 B 152 GLY GLU GLY SER MET THR LYS GLU GLU PHE ALA LYS MET SEQRES 9 B 152 LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA VAL PHE LYS SEQRES 10 B 152 LYS THR VAL SER SER HIS GLU VAL PHE LEU GLN ARG LEU SEQRES 11 B 152 SER SER HIS PRO VAL LEU SER LYS ASP ARG ASN PHE HIS SEQRES 12 B 152 VAL PHE LEU GLU TYR ASP GLN PRO ALA SEQRES 1 C 22 GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SER SEQRES 2 C 22 ALA ASP GLN VAL ILE LEU VAL THR GLN SEQRES 1 D 22 GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SER SEQRES 2 D 22 ALA ASP GLN VAL ILE LEU VAL THR GLN FORMUL 5 HOH *276(H2 O) HELIX 1 AA1 HIS A 69 GLU A 81 1 13 HELIX 2 AA2 THR A 82 ALA A 86 5 5 HELIX 3 AA3 PHE A 99 GLY A 112 1 14 HELIX 4 AA4 LYS A 118 SER A 152 1 35 HELIX 5 AA5 VAL A 155 LYS A 158 5 4 HELIX 6 AA6 ASP A 159 TYR A 168 1 10 HELIX 7 AA7 HIS B 69 GLU B 81 1 13 HELIX 8 AA8 THR B 82 ALA B 86 5 5 HELIX 9 AA9 PHE B 99 GLY B 110 1 12 HELIX 10 AB1 PHE B 121 SER B 152 1 32 HELIX 11 AB2 VAL B 155 LYS B 158 5 4 HELIX 12 AB3 ASP B 159 TYR B 168 1 10 SHEET 1 AA1 3 LEU A 31 ASP A 34 0 SHEET 2 AA1 3 VAL A 45 THR A 53 -1 O HIS A 50 N ASP A 34 SHEET 3 AA1 3 GLU A 62 GLN A 68 -1 O ARG A 67 N PHE A 47 SHEET 1 AA2 5 LEU A 31 ASP A 34 0 SHEET 2 AA2 5 VAL A 45 THR A 53 -1 O HIS A 50 N ASP A 34 SHEET 3 AA2 5 ASP A 37 SER A 40 -1 N LEU A 39 O LYS A 46 SHEET 4 AA2 5 VAL C 114 PHE C 117 -1 O PHE C 116 N ALA A 38 SHEET 5 AA2 5 GLN C 126 LEU C 129 -1 O ILE C 128 N GLN C 115 SHEET 1 AA3 3 LEU B 31 ASP B 34 0 SHEET 2 AA3 3 LYS B 44 THR B 53 -1 O LYS B 52 N GLN B 32 SHEET 3 AA3 3 GLU B 62 GLN B 68 -1 O ARG B 67 N PHE B 47 SHEET 1 AA4 5 LEU B 31 ASP B 34 0 SHEET 2 AA4 5 LYS B 44 THR B 53 -1 O LYS B 52 N GLN B 32 SHEET 3 AA4 5 ASP B 37 GLU B 41 -1 N GLU B 41 O LYS B 44 SHEET 4 AA4 5 ALA D 113 PHE D 117 -1 O PHE D 116 N ALA B 38 SHEET 5 AA4 5 GLN D 126 LEU D 129 -1 O ILE D 128 N GLN D 115 LINK O GLY A 112 CZ PHE A 121 1555 1555 1.17 CISPEP 1 THR A 117 LYS A 118 0 -6.97 CISPEP 2 GLY B 112 GLU B 113 0 -14.25 CISPEP 3 GLY B 114 SER B 115 0 3.47 CISPEP 4 SER B 115 MET B 116 0 -5.13 CRYST1 60.711 67.540 88.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011334 0.00000