HEADER UNKNOWN FUNCTION 28-SEP-16 5TGY TITLE NMR STRUCTURE OF HOLO-PS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PS1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS 4-HELIX BUNDLE, COILED-COIL, HOLOPROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.F.POLIZZI,Y.WU REVDAT 6 15-MAY-24 5TGY 1 REMARK REVDAT 5 14-JUN-23 5TGY 1 REMARK REVDAT 4 27-NOV-19 5TGY 1 REMARK REVDAT 3 06-DEC-17 5TGY 1 JRNL REVDAT 2 27-SEP-17 5TGY 1 REMARK REVDAT 1 09-AUG-17 5TGY 0 JRNL AUTH N.F.POLIZZI,Y.WU,T.LEMMIN,A.M.MAXWELL,S.Q.ZHANG,J.RAWSON, JRNL AUTH 2 D.N.BERATAN,M.J.THERIEN,W.F.DEGRADO JRNL TITL DE NOVO DESIGN OF A HYPERSTABLE NON-NATURAL PROTEIN-LIGAND JRNL TITL 2 COMPLEX WITH SUB- ANGSTROM ACCURACY. JRNL REF NAT CHEM V. 9 1157 2017 JRNL REFN ESSN 1755-4349 JRNL PMID 29168496 JRNL DOI 10.1038/NCHEM.2846 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224141. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100 MM NACL, 50 MM NAPI REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 780 UM [U-100% 13C; U-100% 15N] REMARK 210 HOLO-PS1, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D CO(CA)NH; 3D CCH-TOCSY; REMARK 210 3D SIMULTANEOUS NOESY; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN, NMRPIPE, XEASY, REMARK 210 CYANA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 103 HZ2 LYS A 107 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 55 -62.38 -105.41 REMARK 500 1 ALA A 56 167.32 65.88 REMARK 500 1 ASP A 58 158.75 174.22 REMARK 500 2 ARG A 53 -65.92 -133.75 REMARK 500 2 GLN A 54 153.14 65.12 REMARK 500 2 ALA A 57 -159.31 -147.87 REMARK 500 2 LYS A 107 -108.19 -163.68 REMARK 500 2 LYS A 108 -59.00 157.70 REMARK 500 3 ALA A 57 -67.49 68.92 REMARK 500 3 LYS A 107 33.16 -79.28 REMARK 500 3 LYS A 108 -84.70 -135.82 REMARK 500 4 ARG A 53 34.60 -174.62 REMARK 500 4 GLN A 54 -57.78 73.95 REMARK 500 4 GLU A 55 -52.79 70.21 REMARK 500 4 LYS A 107 99.60 -176.46 REMARK 500 6 GLU A 2 -31.90 -168.98 REMARK 500 6 ASN A 52 -74.90 -97.36 REMARK 500 6 GLN A 54 -89.57 -93.38 REMARK 500 6 ALA A 57 -54.57 71.19 REMARK 500 7 GLU A 55 70.91 56.27 REMARK 500 7 ALA A 57 -120.37 -138.96 REMARK 500 7 LYS A 108 106.01 -52.22 REMARK 500 8 GLU A 2 -62.07 -133.23 REMARK 500 8 GLU A 55 -53.34 67.41 REMARK 500 8 ALA A 57 -31.34 72.81 REMARK 500 8 LYS A 107 -84.94 59.43 REMARK 500 9 ASN A 52 -83.66 -77.16 REMARK 500 9 GLN A 54 -68.87 72.75 REMARK 500 10 GLU A 55 31.42 -85.06 REMARK 500 10 LYS A 107 -79.22 53.98 REMARK 500 10 LYS A 108 84.82 66.77 REMARK 500 11 GLU A 2 77.16 58.79 REMARK 500 11 ARG A 53 -12.43 -145.21 REMARK 500 11 GLN A 54 155.97 66.30 REMARK 500 11 GLU A 55 28.91 -145.82 REMARK 500 11 ALA A 56 -81.84 64.68 REMARK 500 11 ALA A 57 -81.90 60.60 REMARK 500 11 LYS A 107 -31.51 70.46 REMARK 500 11 LYS A 108 -42.48 173.99 REMARK 500 12 ASN A 52 39.02 -80.11 REMARK 500 12 ARG A 53 -80.17 70.49 REMARK 500 12 GLN A 54 -155.88 57.33 REMARK 500 12 ALA A 57 -71.70 65.92 REMARK 500 12 LYS A 107 -91.26 46.86 REMARK 500 13 ASN A 52 -70.29 -64.51 REMARK 500 13 GLN A 54 153.12 75.80 REMARK 500 13 LYS A 108 85.82 40.79 REMARK 500 14 ARG A 53 72.72 75.67 REMARK 500 14 ASP A 58 147.14 -178.33 REMARK 500 14 LYS A 108 -42.62 66.64 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7BU A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 7BU A 201 NB2 101.5 REMARK 620 3 7BU A 201 NC3 101.7 88.1 REMARK 620 4 7BU A 201 NA1 103.6 87.3 154.6 REMARK 620 5 7BU A 201 ND4 101.7 156.7 87.0 87.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BU A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30186 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF HOLO-PS1 REMARK 900 RELATED ID: 5TGW RELATED DB: PDB DBREF 5TGY A 1 109 PDB 5TGY 5TGY 1 109 SEQRES 1 A 109 SER GLU PHE GLU LYS LEU ARG GLN THR GLY ASP GLU LEU SEQRES 2 A 109 VAL GLN ALA PHE GLN ARG LEU ARG GLU ILE PHE ASP LYS SEQRES 3 A 109 GLY ASP ASP ASP SER LEU GLU GLN VAL LEU GLU GLU ILE SEQRES 4 A 109 GLU GLU LEU ILE GLN LYS HIS ARG GLN LEU PHE ASP ASN SEQRES 5 A 109 ARG GLN GLU ALA ALA ASP THR GLU ALA ALA LYS GLN GLY SEQRES 6 A 109 ASP GLN TRP VAL GLN LEU PHE GLN ARG PHE ARG GLU ALA SEQRES 7 A 109 ILE ASP LYS GLY ASP LYS ASP SER LEU GLU GLN LEU LEU SEQRES 8 A 109 GLU GLU LEU GLU GLN ALA LEU GLN LYS ILE ARG GLU LEU SEQRES 9 A 109 ALA GLU LYS LYS ASN HET 7BU A 201 49 HETNAM 7BU [5,10,15,20-TETRAKIS(TRIFLUOROMETHYL)PORPHYRINATO(2-)- HETNAM 2 7BU KAPPA~4~N~21~,N~22~,N~23~,N~24~]ZINC HETSYN 7BU [5,10,15,20-TETRAKIS(TRIFLUOROMETHYL) HETSYN 2 7BU PORPHINATO]ZINC(II) FORMUL 2 7BU C24 H8 F12 N4 ZN HELIX 1 AA1 GLU A 2 LYS A 26 1 25 HELIX 2 AA2 ASP A 28 ARG A 53 1 26 HELIX 3 AA3 ASP A 58 LYS A 81 1 24 HELIX 4 AA4 ASP A 83 GLU A 106 1 24 LINK NE2 HIS A 46 ZN 7BU A 201 1555 1555 2.13 SITE 1 AC1 18 LEU A 6 ARG A 7 GLY A 10 LEU A 13 SITE 2 AC1 18 HIS A 46 ARG A 47 PHE A 50 ALA A 56 SITE 3 AC1 18 ALA A 57 ALA A 62 GLY A 65 ASP A 66 SITE 4 AC1 18 TRP A 68 VAL A 69 LEU A 98 ILE A 101 SITE 5 AC1 18 ARG A 102 ALA A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1