HEADER HYDROLASE/DNA 29-SEP-16 5THG TITLE ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE HIV CCR5 GENE; TITLE 2 HARBORS 43 POINT MUTATIONS RELATIVE TO WILD-TYPE I-ONUI COMPND MOL_ID: 1; COMPND 2 MOLECULE: I-ONUI_E-HCCR5; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (29-MER); COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (29-MER); COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MEGANUCLEASE, ENGINEERED PROTEIN, DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.P.HALLINAN,B.L.STODDARD REVDAT 4 06-MAR-24 5THG 1 LINK REVDAT 3 25-DEC-19 5THG 1 REMARK REVDAT 2 27-SEP-17 5THG 1 REMARK REVDAT 1 03-MAY-17 5THG 0 JRNL AUTH R.WERTHER,J.P.HALLINAN,A.LAMBERT,K.HAVEN,J.JARJOR, JRNL AUTH 2 B.L.STODDARD JRNL TITL THE STRUCTURAL BASIS OF ALTERED GENE SPECIFICITY RESULTING JRNL TITL 2 FROM MEGANUCLEASE AND MEGATAL ENGINEERING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 19313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7749 - 7.4778 0.96 1306 145 0.1864 0.2310 REMARK 3 2 7.4778 - 5.9389 1.00 1286 143 0.2290 0.2317 REMARK 3 3 5.9389 - 5.1892 1.00 1275 141 0.2049 0.3234 REMARK 3 4 5.1892 - 4.7152 1.00 1259 140 0.1981 0.2437 REMARK 3 5 4.7152 - 4.3775 1.00 1250 138 0.1994 0.2274 REMARK 3 6 4.3775 - 4.1196 1.00 1262 140 0.1992 0.3024 REMARK 3 7 4.1196 - 3.9134 1.00 1254 139 0.2190 0.2811 REMARK 3 8 3.9134 - 3.7431 1.00 1241 139 0.2318 0.2937 REMARK 3 9 3.7431 - 3.5990 1.00 1228 137 0.2326 0.2762 REMARK 3 10 3.5990 - 3.4749 1.00 1241 138 0.2549 0.3072 REMARK 3 11 3.4749 - 3.3663 0.99 1231 137 0.2411 0.2939 REMARK 3 12 3.3663 - 3.2701 0.97 1193 132 0.2693 0.3688 REMARK 3 13 3.2701 - 3.1840 0.98 1221 136 0.2784 0.3954 REMARK 3 14 3.1840 - 3.1063 0.93 1136 125 0.3194 0.4205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7102 REMARK 3 ANGLE : 0.690 10100 REMARK 3 CHIRALITY : 0.043 1155 REMARK 3 PLANARITY : 0.004 887 REMARK 3 DIHEDRAL : 22.446 3759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5THG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19313 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX (1.10_2155) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 8000, 100MM HEPES PH 6.6, 5MM REMARK 280 CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.97950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.43950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.43950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.97950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 MET A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 SER A 155 REMARK 465 LYS A 156 REMARK 465 SER A 188 REMARK 465 DC B 1 REMARK 465 DG C 29 REMARK 465 GLN D 0 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 MET D 3 REMARK 465 GLU D 4 REMARK 465 SER D 5 REMARK 465 ASN D 33 REMARK 465 ASN D 34 REMARK 465 SER D 155 REMARK 465 LYS D 156 REMARK 465 ALA D 186 REMARK 465 LYS D 187 REMARK 465 SER D 188 REMARK 465 DC E 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 SER A 36 OG REMARK 470 SER A 42 OG REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 ASN A 119 CG OD1 ND2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ASN A 153 CG OD1 ND2 REMARK 470 ILE A 154 CG1 CG2 CD1 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 VAL A 194 CG1 CG2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 SER A 230 OG REMARK 470 ILE A 276 CG1 CG2 CD1 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 SER A 285 OG REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ARG D 6 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 ILE D 10 CG1 CG2 CD1 REMARK 470 THR D 32 OG1 CG2 REMARK 470 ARG D 35 CG CD NE CZ NH1 NH2 REMARK 470 SER D 36 OG REMARK 470 VAL D 37 CG1 CG2 REMARK 470 SER D 42 OG REMARK 470 LYS D 54 CG CD CE NZ REMARK 470 SER D 55 OG REMARK 470 ARG D 83 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 ASP D 92 CG OD1 OD2 REMARK 470 LYS D 96 CG CD CE NZ REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 LYS D 111 CG CD CE NZ REMARK 470 ASN D 119 CG OD1 ND2 REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 GLU D 121 CG CD OE1 OE2 REMARK 470 LEU D 123 CG CD1 CD2 REMARK 470 LYS D 124 CG CD CE NZ REMARK 470 GLU D 125 CG CD OE1 OE2 REMARK 470 ASN D 126 CG OD1 ND2 REMARK 470 ILE D 128 CG1 CG2 CD1 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 GLU D 130 CG CD OE1 OE2 REMARK 470 ARG D 133 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 134 CG1 CG2 CD1 REMARK 470 ASP D 144 CG OD1 OD2 REMARK 470 GLU D 145 CG CD OE1 OE2 REMARK 470 LYS D 147 CG CD CE NZ REMARK 470 LYS D 148 CG CD CE NZ REMARK 470 ASN D 153 CG OD1 ND2 REMARK 470 ILE D 154 CG1 CG2 CD1 REMARK 470 ARG D 158 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 161 CG1 CG2 CD1 REMARK 470 LYS D 163 CG CD CE NZ REMARK 470 LYS D 169 CG CD CE NZ REMARK 470 LYS D 193 CG CD CE NZ REMARK 470 VAL D 194 CG1 CG2 REMARK 470 ARG D 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 209 CG CD CE NZ REMARK 470 ASN D 210 CG OD1 ND2 REMARK 470 ILE D 224 CG1 CG2 CD1 REMARK 470 GLU D 226 CG CD OE1 OE2 REMARK 470 ASN D 228 CG OD1 ND2 REMARK 470 ARG D 229 CG CD NE CZ NH1 NH2 REMARK 470 SER D 230 OG REMARK 470 LYS D 231 CG CD CE NZ REMARK 470 GLU D 255 CG CD OE1 OE2 REMARK 470 GLU D 264 CG CD OE1 OE2 REMARK 470 LYS D 274 CG CD CE NZ REMARK 470 LEU D 275 CG CD1 CD2 REMARK 470 LYS D 280 CG CD CE NZ REMARK 470 LEU D 282 CG CD1 CD2 REMARK 470 GLU D 284 CG CD OE1 OE2 REMARK 470 SER D 285 OG REMARK 470 ASP D 288 CG OD1 OD2 REMARK 470 GLU D 289 CG CD OE1 OE2 REMARK 470 LYS D 291 CG CD CE NZ REMARK 470 LYS D 292 CG CD CE NZ REMARK 470 LEU D 295 CG CD1 CD2 REMARK 470 VAL D 302 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DG E 21 O HOH E 201 1.83 REMARK 500 OE2 GLU D 189 OG SER D 191 1.91 REMARK 500 OH TYR D 182 OP2 DG E 21 1.96 REMARK 500 OH TYR A 182 OP2 DG B 21 1.97 REMARK 500 OG1 THR A 32 O SER A 36 1.98 REMARK 500 OD1 ASP D 20 OG1 THR D 101 1.99 REMARK 500 N2 DG E 22 O2 DC F 9 2.04 REMARK 500 O4 DT B 18 O HOH B 201 2.08 REMARK 500 N ARG D 6 OG SER D 62 2.12 REMARK 500 OE2 GLU A 178 O HOH A 501 2.16 REMARK 500 N1 DG E 22 N3 DC F 9 2.16 REMARK 500 N2 DG B 22 O2 DC C 9 2.16 REMARK 500 OE1 GLN A 102 N ILE A 161 2.17 REMARK 500 OD1 ASP A 20 OG1 THR A 101 2.18 REMARK 500 O6 DG B 22 N4 DC C 9 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR D 257 N2 DG F 1 2485 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC B 29 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 14 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 8 159.83 -35.87 REMARK 500 ASP A 74 -8.76 -55.42 REMARK 500 ILE A 100 -19.31 -141.01 REMARK 500 LEU A 123 0.51 -69.16 REMARK 500 ASN A 139 -143.89 59.70 REMARK 500 ARG A 158 99.22 -170.73 REMARK 500 VAL A 194 104.34 90.44 REMARK 500 ARG A 229 31.01 -86.48 REMARK 500 LYS A 231 113.22 29.01 REMARK 500 SER A 233 -78.60 -65.48 REMARK 500 MET A 234 157.66 91.65 REMARK 500 GLU A 278 7.11 -69.11 REMARK 500 LYS A 279 10.39 56.28 REMARK 500 ASN A 298 -135.52 61.64 REMARK 500 ARG D 7 -2.64 -177.88 REMARK 500 ASP D 74 -8.57 -57.03 REMARK 500 PHE D 94 0.59 -69.96 REMARK 500 ILE D 100 -18.92 -141.97 REMARK 500 LYS D 120 30.11 -86.66 REMARK 500 LEU D 123 2.26 -69.58 REMARK 500 ASN D 139 -145.26 58.69 REMARK 500 SER D 191 -31.79 -155.82 REMARK 500 LYS D 193 79.35 77.72 REMARK 500 ARG D 229 37.32 -91.76 REMARK 500 LYS D 279 12.04 56.07 REMARK 500 ASN D 298 -135.58 61.67 REMARK 500 VAL D 302 68.23 -62.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 22 OE1 68.7 REMARK 620 3 GLU A 178 OE2 67.1 96.8 REMARK 620 4 HOH A 501 O 59.1 127.4 58.2 REMARK 620 5 DC B 17 OP1 125.7 148.8 70.1 70.7 REMARK 620 6 DT C 17 O3' 117.6 74.7 166.6 135.2 111.9 REMARK 620 7 DT C 18 OP1 75.7 88.0 137.4 85.5 121.2 53.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 62.7 REMARK 620 3 DT B 18 OP2 66.8 65.8 REMARK 620 4 DT C 17 OP1 82.1 143.8 109.3 REMARK 620 5 HOH C 101 O 165.4 131.6 119.4 83.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA D 21 O REMARK 620 2 GLU D 22 OE1 59.3 REMARK 620 3 GLU D 178 OE2 78.8 82.2 REMARK 620 4 DC E 17 OP1 148.6 122.6 71.0 REMARK 620 5 DT F 18 OP1 80.7 74.3 154.5 130.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 22 OE2 REMARK 620 2 GLY D 177 O 58.2 REMARK 620 3 DT E 18 OP2 61.6 66.3 REMARK 620 4 DT F 17 OP1 95.6 153.2 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 101 DBREF 5THG A 0 303 PDB 5THG 5THG 0 303 DBREF 5THG B 1 29 PDB 5THG 5THG 1 29 DBREF 5THG C 1 29 PDB 5THG 5THG 1 29 DBREF 5THG D 0 303 PDB 5THG 5THG 0 303 DBREF 5THG E 1 29 PDB 5THG 5THG 1 29 DBREF 5THG F 1 29 PDB 5THG 5THG 1 29 SEQRES 1 A 304 GLN GLY PRO MET GLU SER ARG ARG GLU SER ILE ASN PRO SEQRES 2 A 304 TRP ILE LEU THR GLY PHE THR ASP ALA GLU GLY SER PHE SEQRES 3 A 304 MET LEU ARG ILE ARG ASN THR ASN ASN ARG SER VAL GLY SEQRES 4 A 304 TYR TYR THR SER LEU VAL PHE GLU ILE THR LEU HIS ASN SEQRES 5 A 304 LYS ASP LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP SEQRES 6 A 304 LYS VAL GLY THR ILE ASN ASN ARG GLY ASP GLY THR ALA SEQRES 7 A 304 ARG LEU SER VAL THR ARG PHE GLU ASP LEU LYS VAL ILE SEQRES 8 A 304 ILE ASP HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS SEQRES 9 A 304 LEU GLY ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL SEQRES 10 A 304 MET GLU ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS SEQRES 11 A 304 GLU LEU VAL ARG ILE LYS ALA LYS MET ASN TRP GLY LEU SEQRES 12 A 304 ASN ASP GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER SEQRES 13 A 304 LYS GLU ARG PRO LEU ILE ASN LYS ASN ILE PRO ASN LEU SEQRES 14 A 304 LYS TRP LEU ALA GLY PHE THR SER GLY GLU GLY THR PHE SEQRES 15 A 304 TYR VAL HIS LEU ALA LYS SER GLU ALA SER GLY LYS VAL SEQRES 16 A 304 TYR VAL ARG LEU ARG PHE ILE ILE GLY GLN HIS ILE ARG SEQRES 17 A 304 ASP LYS ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY SEQRES 18 A 304 CYS GLY THR ILE GLN GLU LYS ASN ARG SER LYS GLY SER SEQRES 19 A 304 MET LEU HIS PHE ILE VAL THR LYS PHE SER ASP ILE ASN SEQRES 20 A 304 ASP LYS ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE SEQRES 21 A 304 GLY VAL LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL SEQRES 22 A 304 ALA LYS LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER SEQRES 23 A 304 GLY LEU ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN SEQRES 24 A 304 LYS GLY ARG VAL PHE SEQRES 1 B 29 DC DC DA DC DC DT DT DC DC DA DG DG DA SEQRES 2 B 29 DA DT DT DC DT DT DT DG DG DC DC DT DG SEQRES 3 B 29 DC DA DC SEQRES 1 C 29 DG DG DT DG DC DA DG DG DC DC DA DA DA SEQRES 2 C 29 DG DA DA DT DT DC DC DT DG DG DA DA DG SEQRES 3 C 29 DG DT DG SEQRES 1 D 304 GLN GLY PRO MET GLU SER ARG ARG GLU SER ILE ASN PRO SEQRES 2 D 304 TRP ILE LEU THR GLY PHE THR ASP ALA GLU GLY SER PHE SEQRES 3 D 304 MET LEU ARG ILE ARG ASN THR ASN ASN ARG SER VAL GLY SEQRES 4 D 304 TYR TYR THR SER LEU VAL PHE GLU ILE THR LEU HIS ASN SEQRES 5 D 304 LYS ASP LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP SEQRES 6 D 304 LYS VAL GLY THR ILE ASN ASN ARG GLY ASP GLY THR ALA SEQRES 7 D 304 ARG LEU SER VAL THR ARG PHE GLU ASP LEU LYS VAL ILE SEQRES 8 D 304 ILE ASP HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS SEQRES 9 D 304 LEU GLY ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL SEQRES 10 D 304 MET GLU ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS SEQRES 11 D 304 GLU LEU VAL ARG ILE LYS ALA LYS MET ASN TRP GLY LEU SEQRES 12 D 304 ASN ASP GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER SEQRES 13 D 304 LYS GLU ARG PRO LEU ILE ASN LYS ASN ILE PRO ASN LEU SEQRES 14 D 304 LYS TRP LEU ALA GLY PHE THR SER GLY GLU GLY THR PHE SEQRES 15 D 304 TYR VAL HIS LEU ALA LYS SER GLU ALA SER GLY LYS VAL SEQRES 16 D 304 TYR VAL ARG LEU ARG PHE ILE ILE GLY GLN HIS ILE ARG SEQRES 17 D 304 ASP LYS ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY SEQRES 18 D 304 CYS GLY THR ILE GLN GLU LYS ASN ARG SER LYS GLY SER SEQRES 19 D 304 MET LEU HIS PHE ILE VAL THR LYS PHE SER ASP ILE ASN SEQRES 20 D 304 ASP LYS ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE SEQRES 21 D 304 GLY VAL LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL SEQRES 22 D 304 ALA LYS LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER SEQRES 23 D 304 GLY LEU ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN SEQRES 24 D 304 LYS GLY ARG VAL PHE SEQRES 1 E 29 DC DC DA DC DC DT DT DC DC DA DG DG DA SEQRES 2 E 29 DA DT DT DC DT DT DT DG DG DC DC DT DG SEQRES 3 E 29 DC DA DC SEQRES 1 F 29 DG DG DT DG DC DA DG DG DC DC DA DA DA SEQRES 2 F 29 DG DA DA DT DT DC DC DT DG DG DA DA DG SEQRES 3 F 29 DG DT DG HET CA A 401 1 HET CA A 402 1 HET GOL B 101 14 HET CA D 401 1 HET CA D 402 1 HET GOL E 101 14 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 CA 4(CA 2+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 13 HOH *12(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 TYR A 97 1 15 HELIX 4 AA4 GLN A 102 ASN A 119 1 18 HELIX 5 AA5 LYS A 124 ALA A 136 1 13 HELIX 6 AA6 ASN A 143 PHE A 150 1 8 HELIX 7 AA7 ASN A 167 GLU A 178 1 12 HELIX 8 AA8 HIS A 205 ARG A 207 5 3 HELIX 9 AA9 ASP A 208 GLY A 220 1 13 HELIX 10 AB1 LYS A 241 LYS A 248 1 8 HELIX 11 AB2 LYS A 248 ASN A 256 1 9 HELIX 12 AB3 GLY A 260 GLU A 278 1 19 HELIX 13 AB4 THR A 283 ASN A 296 1 14 HELIX 14 AB5 MET A 297 ARG A 301 5 5 HELIX 15 AB6 ASN D 11 GLU D 22 1 12 HELIX 16 AB7 ASP D 53 LYS D 65 1 13 HELIX 17 AB8 ARG D 83 TYR D 97 1 15 HELIX 18 AB9 GLN D 102 ASN D 119 1 18 HELIX 19 AC1 LYS D 124 ALA D 136 1 13 HELIX 20 AC2 ASN D 143 PHE D 150 1 8 HELIX 21 AC3 ASN D 167 GLU D 178 1 12 HELIX 22 AC4 ASP D 208 GLY D 220 1 13 HELIX 23 AC5 LYS D 241 LYS D 248 1 8 HELIX 24 AC6 LYS D 248 ASN D 256 1 9 HELIX 25 AC7 VAL D 261 GLU D 278 1 18 HELIX 26 AC8 THR D 283 ASN D 296 1 14 SHEET 1 AA1 4 SER A 24 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O TYR A 40 N ARG A 30 SHEET 3 AA1 4 THR A 76 VAL A 81 -1 O ALA A 77 N LEU A 49 SHEET 4 AA1 4 THR A 68 ASN A 71 -1 N ASN A 70 O ARG A 78 SHEET 1 AA2 4 GLY A 179 ALA A 186 0 SHEET 2 AA2 4 TYR A 195 GLN A 204 -1 O TYR A 195 N ALA A 186 SHEET 3 AA2 4 LEU A 235 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 THR A 223 GLU A 226 -1 N THR A 223 O ILE A 238 SHEET 1 AA3 4 SER D 24 ASN D 31 0 SHEET 2 AA3 4 TYR D 39 HIS D 50 -1 O VAL D 44 N MET D 26 SHEET 3 AA3 4 THR D 76 VAL D 81 -1 O LEU D 79 N ILE D 47 SHEET 4 AA3 4 THR D 68 ASN D 71 -1 N ASN D 70 O ARG D 78 SHEET 1 AA4 4 GLY D 179 HIS D 184 0 SHEET 2 AA4 4 ARG D 197 HIS D 205 -1 O ARG D 197 N HIS D 184 SHEET 3 AA4 4 MET D 234 VAL D 239 -1 O LEU D 235 N GLN D 204 SHEET 4 AA4 4 THR D 223 GLU D 226 -1 N THR D 223 O ILE D 238 LINK O ALA A 21 CA CA A 402 1555 1555 2.43 LINK OE2 GLU A 22 CA CA A 401 1555 1555 2.80 LINK OE1 GLU A 22 CA CA A 402 1555 1555 2.59 LINK O GLY A 177 CA CA A 401 1555 1555 2.36 LINK OE2 GLU A 178 CA CA A 402 1555 1555 2.28 LINK CA CA A 401 OP2 DT B 18 1555 1555 2.55 LINK CA CA A 401 OP1 DT C 17 1555 1555 2.97 LINK CA CA A 401 O HOH C 101 1555 1555 2.70 LINK CA CA A 402 O HOH A 501 1555 1555 2.14 LINK CA CA A 402 OP1 DC B 17 1555 1555 2.56 LINK CA CA A 402 O3' DT C 17 1555 1555 3.03 LINK CA CA A 402 OP1 DT C 18 1555 1555 2.20 LINK O ALA D 21 CA CA D 402 1555 1555 2.12 LINK OE2 GLU D 22 CA CA D 401 1555 1555 2.81 LINK OE1 GLU D 22 CA CA D 402 1555 1555 3.11 LINK O GLY D 177 CA CA D 401 1555 1555 2.48 LINK OE2 GLU D 178 CA CA D 402 1555 1555 2.10 LINK CA CA D 401 OP2 DT E 18 1555 1555 2.53 LINK CA CA D 401 OP1 DT F 17 1555 1555 2.97 LINK CA CA D 402 OP1 DC E 17 1555 1555 2.46 LINK CA CA D 402 OP1 DT F 18 1555 1555 2.04 CISPEP 1 GLY A 232 SER A 233 0 1.49 SITE 1 AC1 5 GLU A 22 GLY A 177 DT B 18 DT C 17 SITE 2 AC1 5 HOH C 101 SITE 1 AC2 7 ALA A 21 GLU A 22 GLU A 178 HOH A 501 SITE 2 AC2 7 DC B 17 DT C 17 DT C 18 SITE 1 AC3 3 DG B 11 DG B 12 DA B 13 SITE 1 AC4 4 GLU D 22 GLY D 177 DT E 18 DT F 17 SITE 1 AC5 6 ALA D 21 GLU D 22 GLU D 178 DC E 17 SITE 2 AC5 6 DT F 17 DT F 18 SITE 1 AC6 3 DG E 11 DG E 12 DA E 13 CRYST1 75.959 112.351 122.879 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008138 0.00000