HEADER LIGASE 29-SEP-16 5THH TITLE CRYSTAL STRUCTURE OF A HUMAN TYROSYL-TRNA SYNTHETASE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TYROSYL-TRNA SYNTHETASE, CMT MUTANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BLOCQUEL,X.L.YANG REVDAT 4 04-OCT-23 5THH 1 REMARK REVDAT 3 06-SEP-17 5THH 1 JRNL REVDAT 2 07-JUN-17 5THH 1 JRNL REVDAT 1 17-MAY-17 5THH 0 JRNL AUTH D.BLOCQUEL,S.LI,N.WEI,H.DAUB,M.SAJISH,M.L.ERFURTH,G.KOOI, JRNL AUTH 2 J.ZHOU,G.BAI,P.SCHIMMEL,A.JORDANOVA,X.L.YANG JRNL TITL ALTERNATIVE STABLE CONFORMATION CAPABLE OF PROTEIN JRNL TITL 2 MISINTERACTION LINKS TRNA SYNTHETASE TO PERIPHERAL JRNL TITL 3 NEUROPATHY. JRNL REF NUCLEIC ACIDS RES. V. 45 8091 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28531329 JRNL DOI 10.1093/NAR/GKX455 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8595 - 4.7194 0.99 2348 155 0.1852 0.1904 REMARK 3 2 4.7194 - 3.7470 1.00 2226 147 0.1418 0.1799 REMARK 3 3 3.7470 - 3.2736 1.00 2193 144 0.1626 0.2169 REMARK 3 4 3.2736 - 2.9744 1.00 2173 144 0.1875 0.2471 REMARK 3 5 2.9744 - 2.7613 1.00 2187 145 0.1949 0.2304 REMARK 3 6 2.7613 - 2.5986 1.00 2146 142 0.1906 0.2263 REMARK 3 7 2.5986 - 2.4684 1.00 2151 143 0.1803 0.2330 REMARK 3 8 2.4684 - 2.3610 1.00 2138 141 0.1838 0.2635 REMARK 3 9 2.3610 - 2.2701 1.00 2164 144 0.1837 0.2151 REMARK 3 10 2.2701 - 2.1918 1.00 2109 139 0.1817 0.2284 REMARK 3 11 2.1918 - 2.1233 1.00 2151 142 0.1900 0.2422 REMARK 3 12 2.1233 - 2.0626 1.00 2122 141 0.1973 0.2639 REMARK 3 13 2.0626 - 2.0083 1.00 2168 144 0.2061 0.2714 REMARK 3 14 2.0083 - 1.9593 0.92 1925 127 0.2414 0.2981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2716 REMARK 3 ANGLE : 1.616 3670 REMARK 3 CHIRALITY : 0.086 411 REMARK 3 PLANARITY : 0.009 462 REMARK 3 DIHEDRAL : 14.808 1034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3481 26.7441 -22.7517 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.1982 REMARK 3 T33: 0.2177 T12: 0.0185 REMARK 3 T13: -0.0201 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 2.0774 L22: 2.2122 REMARK 3 L33: 2.3932 L12: 0.2243 REMARK 3 L13: 0.4448 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.0183 S13: -0.1476 REMARK 3 S21: 0.1053 S22: 0.0007 S23: -0.0793 REMARK 3 S31: 0.2058 S32: 0.1114 S33: -0.0690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4502 32.9257 -13.9821 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1870 REMARK 3 T33: 0.1683 T12: -0.0078 REMARK 3 T13: -0.0058 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.6664 L22: 2.1248 REMARK 3 L33: 3.3810 L12: 0.4144 REMARK 3 L13: 0.7618 L23: 1.2087 REMARK 3 S TENSOR REMARK 3 S11: 0.0903 S12: -0.1512 S13: -0.0457 REMARK 3 S21: 0.0941 S22: -0.0795 S23: 0.1022 REMARK 3 S31: 0.0705 S32: -0.2292 S33: 0.0025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1074 8.1597 -32.1995 REMARK 3 T TENSOR REMARK 3 T11: 0.2769 T22: 0.2228 REMARK 3 T33: 0.2825 T12: 0.0174 REMARK 3 T13: -0.0217 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.3789 L22: 2.8766 REMARK 3 L33: 5.7303 L12: 0.9778 REMARK 3 L13: 2.1345 L23: 2.1751 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: -0.1593 S13: -0.2676 REMARK 3 S21: 0.4284 S22: -0.1129 S23: -0.1388 REMARK 3 S31: 0.4818 S32: -0.1740 S33: -0.0543 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2462 28.8035 -14.5079 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.3213 REMARK 3 T33: 0.3011 T12: -0.0840 REMARK 3 T13: -0.0124 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.6778 L22: 5.5335 REMARK 3 L33: 0.4552 L12: 3.8153 REMARK 3 L13: 0.0937 L23: 0.1338 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: 0.3854 S13: -1.6932 REMARK 3 S21: -0.1825 S22: 0.6186 S23: -1.3636 REMARK 3 S31: 0.1836 S32: -0.3651 S33: -0.5978 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5THH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07808 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1N3L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, ACETONE, SODIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.75500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.70500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 221 REMARK 465 LYS A 222 REMARK 465 MET A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 SER A 226 REMARK 465 GLU A 227 REMARK 465 GLU A 228 REMARK 465 GLU A 229 REMARK 465 SER A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 725 O HOH A 733 1.85 REMARK 500 O HOH A 740 O HOH A 765 1.88 REMARK 500 NZ LYS A 246 O HOH A 501 1.91 REMARK 500 O HOH A 719 O HOH A 734 1.93 REMARK 500 O HOH A 777 O HOH A 785 1.94 REMARK 500 ND2 ASN A 254 O HOH A 502 1.95 REMARK 500 O HOH A 706 O HOH A 754 1.96 REMARK 500 OE1 GLU A 256 O HOH A 503 1.97 REMARK 500 O HOH A 644 O HOH A 725 2.00 REMARK 500 O HOH A 688 O HOH A 775 2.02 REMARK 500 O HOH A 626 O HOH A 747 2.05 REMARK 500 OE1 GLU A 326 O HOH A 504 2.06 REMARK 500 OE1 GLU A 20 O HOH A 505 2.14 REMARK 500 O PRO A 342 O HOH A 506 2.14 REMARK 500 OD1 ASN A 82 O HOH A 507 2.16 REMARK 500 O GLU A 106 O HOH A 508 2.16 REMARK 500 O HOH A 608 O HOH A 746 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 665 O HOH A 709 3544 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -2.79 68.38 REMARK 500 THR A 45 -105.18 -113.35 REMARK 500 PRO A 111 98.88 -62.21 REMARK 500 LEU A 112 51.37 -65.38 REMARK 500 GLU A 113 -61.01 -107.49 REMARK 500 TYR A 123 -17.03 -141.27 REMARK 500 THR A 219 -88.51 -122.80 REMARK 500 CYS A 250 83.63 -159.49 REMARK 500 ASN A 257 29.73 48.71 REMARK 500 VAL A 267 -50.81 -121.47 REMARK 500 ALA A 332 -25.62 90.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5THL RELATED DB: PDB DBREF 5THH A 4 342 UNP P54577 SYYC_HUMAN 4 342 SEQADV 5THH LYS A 196 UNP P54577 GLU 196 ENGINEERED MUTATION SEQRES 1 A 339 ALA PRO SER PRO GLU GLU LYS LEU HIS LEU ILE THR ARG SEQRES 2 A 339 ASN LEU GLN GLU VAL LEU GLY GLU GLU LYS LEU LYS GLU SEQRES 3 A 339 ILE LEU LYS GLU ARG GLU LEU LYS ILE TYR TRP GLY THR SEQRES 4 A 339 ALA THR THR GLY LYS PRO HIS VAL ALA TYR PHE VAL PRO SEQRES 5 A 339 MET SER LYS ILE ALA ASP PHE LEU LYS ALA GLY CYS GLU SEQRES 6 A 339 VAL THR ILE LEU PHE ALA ASP LEU HIS ALA TYR LEU ASP SEQRES 7 A 339 ASN MET LYS ALA PRO TRP GLU LEU LEU GLU LEU ARG VAL SEQRES 8 A 339 SER TYR TYR GLU ASN VAL ILE LYS ALA MET LEU GLU SER SEQRES 9 A 339 ILE GLY VAL PRO LEU GLU LYS LEU LYS PHE ILE LYS GLY SEQRES 10 A 339 THR ASP TYR GLN LEU SER LYS GLU TYR THR LEU ASP VAL SEQRES 11 A 339 TYR ARG LEU SER SER VAL VAL THR GLN HIS ASP SER LYS SEQRES 12 A 339 LYS ALA GLY ALA GLU VAL VAL LYS GLN VAL GLU HIS PRO SEQRES 13 A 339 LEU LEU SER GLY LEU LEU TYR PRO GLY LEU GLN ALA LEU SEQRES 14 A 339 ASP GLU GLU TYR LEU LYS VAL ASP ALA GLN PHE GLY GLY SEQRES 15 A 339 ILE ASP GLN ARG LYS ILE PHE THR PHE ALA LYS LYS TYR SEQRES 16 A 339 LEU PRO ALA LEU GLY TYR SER LYS ARG VAL HIS LEU MET SEQRES 17 A 339 ASN PRO MET VAL PRO GLY LEU THR GLY SER LYS MET SER SEQRES 18 A 339 SER SER GLU GLU GLU SER LYS ILE ASP LEU LEU ASP ARG SEQRES 19 A 339 LYS GLU ASP VAL LYS LYS LYS LEU LYS LYS ALA PHE CYS SEQRES 20 A 339 GLU PRO GLY ASN VAL GLU ASN ASN GLY VAL LEU SER PHE SEQRES 21 A 339 ILE LYS HIS VAL LEU PHE PRO LEU LYS SER GLU PHE VAL SEQRES 22 A 339 ILE LEU ARG ASP GLU LYS TRP GLY GLY ASN LYS THR TYR SEQRES 23 A 339 THR ALA TYR VAL ASP LEU GLU LYS ASP PHE ALA ALA GLU SEQRES 24 A 339 VAL VAL HIS PRO GLY ASP LEU LYS ASN SER VAL GLU VAL SEQRES 25 A 339 ALA LEU ASN LYS LEU LEU ASP PRO ILE ARG GLU LYS PHE SEQRES 26 A 339 ASN THR PRO ALA LEU LYS LYS LEU ALA SER ALA ALA TYR SEQRES 27 A 339 PRO HET TYR A 401 13 HETNAM TYR TYROSINE FORMUL 2 TYR C9 H11 N O3 FORMUL 3 HOH *288(H2 O) HELIX 1 AA1 SER A 6 ARG A 16 1 11 HELIX 2 AA2 GLY A 23 ARG A 34 1 12 HELIX 3 AA3 HIS A 49 ALA A 51 5 3 HELIX 4 AA4 TYR A 52 ALA A 65 1 14 HELIX 5 AA5 ASP A 75 ASP A 81 1 7 HELIX 6 AA6 LEU A 89 GLY A 109 1 21 HELIX 7 AA7 THR A 121 TYR A 123 5 3 HELIX 8 AA8 SER A 126 SER A 138 1 13 HELIX 9 AA9 THR A 141 GLY A 149 1 9 HELIX 10 AB1 LEU A 160 LEU A 177 1 18 HELIX 11 AB2 GLN A 188 LEU A 199 1 12 HELIX 12 AB3 PRO A 200 GLY A 203 5 4 HELIX 13 AB4 ARG A 237 LYS A 246 1 10 HELIX 14 AB5 ASN A 258 VAL A 267 1 10 HELIX 15 AB6 VAL A 267 SER A 273 1 7 HELIX 16 AB7 ASP A 280 GLY A 284 5 5 HELIX 17 AB8 ALA A 291 ALA A 301 1 11 HELIX 18 AB9 HIS A 305 PHE A 328 1 24 HELIX 19 AC1 ALA A 332 TYR A 341 1 10 SHEET 1 AA1 6 GLU A 20 LEU A 22 0 SHEET 2 AA1 6 VAL A 208 ASN A 212 -1 O HIS A 209 N LEU A 22 SHEET 3 AA1 6 ALA A 181 GLY A 185 1 N GLN A 182 O LEU A 210 SHEET 4 AA1 6 LYS A 37 ALA A 43 1 N TYR A 39 O PHE A 183 SHEET 5 AA1 6 GLU A 68 ALA A 74 1 O GLU A 68 N ILE A 38 SHEET 6 AA1 6 LEU A 115 LYS A 119 1 O ILE A 118 N PHE A 73 SHEET 1 AA2 2 PHE A 275 ILE A 277 0 SHEET 2 AA2 2 LYS A 287 TYR A 289 -1 O LYS A 287 N ILE A 277 CISPEP 1 ALA A 4 PRO A 5 0 -3.84 SITE 1 AC1 15 TYR A 39 GLY A 41 LEU A 72 ALA A 74 SITE 2 AC1 15 HIS A 77 VAL A 152 TYR A 166 GLN A 170 SITE 3 AC1 15 ASP A 173 GLN A 182 GLN A 188 HOH A 537 SITE 4 AC1 15 HOH A 571 HOH A 648 HOH A 685 CRYST1 35.238 75.705 163.510 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006116 0.00000