HEADER TRANSFERASE 03-OCT-16 5TIZ TITLE SCHISTOSOMA JAPONICUM (BLOOD FLUKE) SULFOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6182; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SULFOTRANSFERASE, PARASITE, HELMINTH, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.TAYLOR,P.J.HART REVDAT 4 04-OCT-23 5TIZ 1 REMARK REVDAT 3 19-JUL-17 5TIZ 1 JRNL REVDAT 2 07-JUN-17 5TIZ 1 JRNL REVDAT 1 31-MAY-17 5TIZ 0 JRNL AUTH A.B.TAYLOR,K.M.ROBERTS,X.CAO,N.E.CLARK,S.P.HOLLOWAY, JRNL AUTH 2 E.DONATI,C.M.POLCARO,L.PICA-MATTOCCIA,R.S.TARPLEY, JRNL AUTH 3 S.F.MCHARDY,D.CIOLI,P.T.LOVERDE,P.F.FITZPATRICK,P.J.HART JRNL TITL STRUCTURAL AND ENZYMATIC INSIGHTS INTO SPECIES-SPECIFIC JRNL TITL 2 RESISTANCE TO SCHISTOSOME PARASITE DRUG THERAPY. JRNL REF J. BIOL. CHEM. V. 292 11154 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28536265 JRNL DOI 10.1074/JBC.M116.766527 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 7107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.6576 - 4.9069 0.89 1301 145 0.1920 0.2277 REMARK 3 2 4.9069 - 3.8951 0.94 1266 141 0.1834 0.2350 REMARK 3 3 3.8951 - 3.4028 0.97 1285 141 0.2397 0.3012 REMARK 3 4 3.4028 - 3.0917 0.97 1279 142 0.2607 0.3089 REMARK 3 5 3.0917 - 2.8701 0.98 1266 141 0.3214 0.3912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2128 REMARK 3 ANGLE : 0.848 2893 REMARK 3 CHIRALITY : 0.039 336 REMARK 3 PLANARITY : 0.002 360 REMARK 3 DIHEDRAL : 16.787 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 54.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15800 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(V/V) PEG 8000, 3%(V/V) MPD, 0.1M REMARK 280 IMIDAZOLE/HYDROCHLORIC ACID PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.73500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.36750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.10250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.73500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.10250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.36750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 -50.73 -134.52 REMARK 500 LYS A 45 61.18 -115.20 REMARK 500 ASP A 87 -178.38 73.88 REMARK 500 VAL A 123 -65.60 -105.72 REMARK 500 VAL A 124 -89.47 -74.66 REMARK 500 ASP A 167 99.00 -60.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A3P A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TIV RELATED DB: PDB REMARK 900 RELATED ID: 5TIW RELATED DB: PDB REMARK 900 RELATED ID: 5TIX RELATED DB: PDB REMARK 900 RELATED ID: 5TIY RELATED DB: PDB DBREF 5TIZ A 1 253 UNP C1LER5 C1LER5_SCHJA 1 253 SEQADV 5TIZ GLY A 254 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ SER A 255 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 256 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 257 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 258 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 259 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 260 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 261 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 262 UNP C1LER5 EXPRESSION TAG SEQADV 5TIZ HIS A 263 UNP C1LER5 EXPRESSION TAG SEQRES 1 A 263 MET SER GLN LEU GLN THR SER LEU THR VAL ILE GLY ALA SEQRES 2 A 263 GLY LEU PRO ARG THR GLY THR LEU SER MET LYS LYS ALA SEQRES 3 A 263 LEU GLU THR ILE TYR CYS GLN PRO CYS TYR HIS MET TYR SEQRES 4 A 263 GLU ILE ILE LEU ASN LYS GLN TYR ASP ILE SER LYS TRP SEQRES 5 A 263 GLN THR LEU LEU ASP ILE LYS GLN SER LYS THR THR SER SEQRES 6 A 263 ASN GLU ILE LEU ILE ILE GLN ASN SER LEU LYS GLU ILE SEQRES 7 A 263 LEU ASN GLY TYR ILE ALA VAL THR ASP LEU PRO ALA CYS SEQRES 8 A 263 GLY PHE TYR ARG GLU LEU MET THR MET TYR PRO ASN ALA SEQRES 9 A 263 LYS VAL ILE LEU THR ILE ARG ASP ARG ASN ASP TRP LEU SEQRES 10 A 263 THR SER PHE ARG LYS VAL VAL LEU PRO ARG THR ASN ASP SEQRES 11 A 263 THR TYR LYS GLU GLU VAL ASP LYS VAL ASN ARG ILE LEU SEQRES 12 A 263 GLY LEU ASN THR GLU PHE ASP LYS MET ASN ILE ASP SER SEQRES 13 A 263 LEU LYS PHE THR PHE GLN ASN ASN GLN ILE ASP PHE ASP SEQRES 14 A 263 ASP ASP ASN ASN LEU LEU GLU CYS TYR ASP GLU TYR ASN SEQRES 15 A 263 LYS THR VAL GLN GLU ILE VAL PRO SER GLU ARG LEU LEU SEQRES 16 A 263 VAL HIS LYS LEU GLY ASP GLY TRP GLU PRO LEU CYS GLN SEQRES 17 A 263 PHE LEU ASN VAL ASN ILE PRO ILE GLY ILE THR TYR PRO SEQRES 18 A 263 HIS VAL ASN ALA LEU LYS GLU VAL THR GLU LEU THR GLU SEQRES 19 A 263 LEU LEU ILE LYS TYR GLN SER LEU ASP VAL ILE LYS THR SEQRES 20 A 263 LYS LEU SER GLU VAL PHE GLY SER HIS HIS HIS HIS HIS SEQRES 21 A 263 HIS HIS HIS HET A3P A 301 27 HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE FORMUL 2 A3P C10 H15 N5 O10 P2 HELIX 1 AA1 GLY A 19 CYS A 32 1 14 HELIX 2 AA2 HIS A 37 ASN A 44 1 8 HELIX 3 AA3 TYR A 47 SER A 61 1 15 HELIX 4 AA4 THR A 64 ASN A 80 1 17 HELIX 5 AA5 ALA A 90 GLY A 92 5 3 HELIX 6 AA6 PHE A 93 TYR A 101 1 9 HELIX 7 AA7 ASP A 112 VAL A 123 1 12 HELIX 8 AA8 TYR A 132 LEU A 143 1 12 HELIX 9 AA9 ASN A 146 GLN A 162 1 17 HELIX 10 AB1 ASP A 170 VAL A 189 1 20 HELIX 11 AB2 PRO A 190 GLU A 192 5 3 HELIX 12 AB3 GLY A 202 ASN A 211 1 10 HELIX 13 AB4 ALA A 225 TYR A 239 1 15 HELIX 14 AB5 SER A 241 PHE A 253 1 13 SHEET 1 AA1 3 VAL A 10 GLY A 12 0 SHEET 2 AA1 3 LYS A 105 ILE A 110 1 O ILE A 107 N ILE A 11 SHEET 3 AA1 3 LEU A 194 LYS A 198 1 O LEU A 195 N LEU A 108 SHEET 1 AA2 2 CYS A 35 TYR A 36 0 SHEET 2 AA2 2 ALA A 84 VAL A 85 1 O ALA A 84 N TYR A 36 CISPEP 1 LEU A 88 PRO A 89 0 -3.93 SITE 1 AC1 15 ARG A 17 THR A 18 GLY A 19 THR A 20 SITE 2 AC1 15 LEU A 21 SER A 22 ARG A 111 SER A 119 SITE 3 AC1 15 LEU A 199 TYR A 220 PRO A 221 HIS A 222 SITE 4 AC1 15 ASN A 224 ALA A 225 LEU A 226 CRYST1 57.308 57.308 181.470 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005511 0.00000