HEADER OXIDOREDUCTASE 05-OCT-16 5TJZ TITLE STRUCTURE OF 4-HYDROXYTETRAHYDRODIPICOLINATE REDUCTASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS WITH NADPH AND 2,6 PYRIDINE DICARBOXYLIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HTPA REDUCTASE; COMPND 5 EC: 1.17.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25177 / SOURCE 3 H37RA); SOURCE 4 ORGANISM_TAXID: 419947; SOURCE 5 STRAIN: ATCC 25177 / H37RA; SOURCE 6 GENE: DAPB, MRA_2798; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, LYSINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR N.J.MANK,A.K.ARNETTE,V.KLAPPER,M.CHRUSZCZ REVDAT 3 04-OCT-23 5TJZ 1 REMARK REVDAT 2 30-JUN-21 5TJZ 1 JRNL REVDAT 1 10-JAN-18 5TJZ 0 JRNL AUTH S.POTE,S.KACHHAP,N.J.MANK,L.DANESHIAN,V.KLAPPER,S.PYE, JRNL AUTH 2 A.K.ARNETTE,L.S.SHIMIZU,T.BOROWSKI,M.CHRUSZCZ JRNL TITL COMPARATIVE STRUCTURAL AND MECHANISTIC STUDIES OF JRNL TITL 2 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASES FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS AND VIBRIO VULNIFICUS. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1865 29750 2021 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 32980502 JRNL DOI 10.1016/J.BBAGEN.2020.129750 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 49673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2053 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2799 ; 2.036 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.648 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;11.401 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1543 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 1.120 ; 1.731 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1297 ; 1.718 ; 2.595 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 2.354 ; 2.156 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1370 17.8350 9.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.1936 REMARK 3 T33: 0.0399 T12: -0.0593 REMARK 3 T13: -0.0215 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.5541 L22: 2.0447 REMARK 3 L33: 2.0208 L12: 0.0418 REMARK 3 L13: 0.1270 L23: -1.4031 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: 0.3127 S13: -0.2240 REMARK 3 S21: -0.3351 S22: 0.0777 S23: 0.0150 REMARK 3 S31: 0.1759 S32: -0.1320 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3380 23.2790 26.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.0953 REMARK 3 T33: 0.0243 T12: -0.0356 REMARK 3 T13: -0.0115 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.2531 L22: 0.2673 REMARK 3 L33: 0.4374 L12: 0.1247 REMARK 3 L13: -0.2980 L23: -0.1893 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0154 S13: 0.0413 REMARK 3 S21: -0.0331 S22: 0.0106 S23: 0.0251 REMARK 3 S31: -0.0696 S32: -0.0267 S33: -0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5830 19.1080 37.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0781 REMARK 3 T33: 0.0534 T12: -0.0441 REMARK 3 T13: 0.0023 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.6892 L22: 1.5346 REMARK 3 L33: 4.1865 L12: -1.3542 REMARK 3 L13: -2.2573 L23: 1.5746 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.0130 S13: 0.2152 REMARK 3 S21: -0.0093 S22: 0.0650 S23: -0.1629 REMARK 3 S31: -0.2576 S32: 0.0310 S33: -0.1368 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9200 11.3670 38.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.0978 REMARK 3 T33: 0.0164 T12: -0.0483 REMARK 3 T13: 0.0035 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3140 L22: 0.3208 REMARK 3 L33: 0.6743 L12: 0.0153 REMARK 3 L13: 0.1104 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.0119 S13: 0.0442 REMARK 3 S21: -0.0245 S22: 0.0133 S23: -0.0240 REMARK 3 S31: -0.0418 S32: -0.0040 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9650 26.9520 26.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0913 REMARK 3 T33: 0.0656 T12: 0.0165 REMARK 3 T13: 0.0247 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.8239 L22: 2.6233 REMARK 3 L33: 3.7585 L12: 2.0903 REMARK 3 L13: 0.1804 L23: -1.8743 REMARK 3 S TENSOR REMARK 3 S11: 0.1388 S12: -0.2033 S13: 0.3674 REMARK 3 S21: 0.1950 S22: 0.0136 S23: 0.3676 REMARK 3 S31: -0.1692 S32: -0.3129 S33: -0.1524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5TJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000223661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 1C3V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 6.5, 1.5 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.77500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 167.55000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.77500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.77500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 167.55000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 83.77500 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 83.77500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C BEZ A 302 LIES ON A SPECIAL POSITION. REMARK 375 C1 BEZ A 302 LIES ON A SPECIAL POSITION. REMARK 375 C4 BEZ A 302 LIES ON A SPECIAL POSITION. REMARK 375 N1 IMD A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 56 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 -106.20 -121.69 REMARK 500 THR A 77 -165.40 -100.86 REMARK 500 ASP A 163 114.66 -166.78 REMARK 500 VAL A 191 -88.19 -114.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 713 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 6.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AE3 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 318 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TJY RELATED DB: PDB DBREF 5TJZ A 1 244 UNP A5U6C6 DAPB_MYCTA 1 244 SEQADV 5TJZ GLY A 0 UNP A5U6C6 EXPRESSION TAG SEQRES 1 A 245 GLY MET ARG VAL GLY VAL LEU GLY ALA LYS GLY LYS VAL SEQRES 2 A 245 GLY ALA THR MET VAL ARG ALA VAL ALA ALA ALA ASP ASP SEQRES 3 A 245 LEU THR LEU SER ALA GLU LEU ASP ALA GLY ASP PRO LEU SEQRES 4 A 245 SER LEU LEU THR ASP GLY ASN THR GLU VAL VAL ILE ASP SEQRES 5 A 245 PHE THR HIS PRO ASP VAL VAL MET GLY ASN LEU GLU PHE SEQRES 6 A 245 LEU ILE ASP ASN GLY ILE HIS ALA VAL VAL GLY THR THR SEQRES 7 A 245 GLY PHE THR ALA GLU ARG PHE GLN GLN VAL GLU SER TRP SEQRES 8 A 245 LEU VAL ALA LYS PRO ASN THR SER VAL LEU ILE ALA PRO SEQRES 9 A 245 ASN PHE ALA ILE GLY ALA VAL LEU SER MET HIS PHE ALA SEQRES 10 A 245 LYS GLN ALA ALA ARG PHE PHE ASP SER ALA GLU VAL ILE SEQRES 11 A 245 GLU LEU HIS HIS PRO HIS LYS ALA ASP ALA PRO SER GLY SEQRES 12 A 245 THR ALA ALA ARG THR ALA LYS LEU ILE ALA GLU ALA ARG SEQRES 13 A 245 LYS GLY LEU PRO PRO ASN PRO ASP ALA THR SER THR SER SEQRES 14 A 245 LEU PRO GLY ALA ARG GLY ALA ASP VAL ASP GLY ILE PRO SEQRES 15 A 245 VAL HIS ALA VAL ARG LEU ALA GLY LEU VAL ALA HIS GLN SEQRES 16 A 245 GLU VAL LEU PHE GLY THR GLU GLY GLU THR LEU THR ILE SEQRES 17 A 245 ARG HIS ASP SER LEU ASP ARG THR SER PHE VAL PRO GLY SEQRES 18 A 245 VAL LEU LEU ALA VAL ARG ARG ILE ALA GLU ARG PRO GLY SEQRES 19 A 245 LEU THR VAL GLY LEU GLU PRO LEU LEU ASP LEU HET PDC A 301 12 HET BEZ A 302 9 HET IMD A 303 5 HET NAP A 304 48 HET AE3 A 305 9 HET CL A 306 1 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET SO4 A 315 5 HET CL A 316 1 HET CL A 317 1 HET EDO A 318 4 HETNAM PDC PYRIDINE-2,6-DICARBOXYLIC ACID HETNAM BEZ BENZOIC ACID HETNAM IMD IMIDAZOLE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM AE3 2-(2-ETHOXYETHOXY)ETHANOL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN PDC DIPICOLINIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PDC C7 H5 N O4 FORMUL 3 BEZ C7 H6 O2 FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 AE3 C6 H14 O3 FORMUL 7 CL 3(CL 1-) FORMUL 8 EDO 9(C2 H6 O2) FORMUL 16 SO4 O4 S 2- FORMUL 20 HOH *314(H2 O) HELIX 1 AA1 GLY A 10 ALA A 23 1 14 HELIX 2 AA2 LEU A 38 GLY A 44 1 7 HELIX 3 AA3 VAL A 57 ASN A 68 1 12 HELIX 4 AA4 THR A 80 ALA A 93 1 14 HELIX 5 AA5 ALA A 106 ALA A 120 1 15 HELIX 6 AA6 ARG A 121 PHE A 123 5 3 HELIX 7 AA7 SER A 141 ARG A 155 1 15 HELIX 8 AA8 ASP A 213 SER A 216 5 4 HELIX 9 AA9 PHE A 217 ILE A 228 1 12 HELIX 10 AB1 ALA A 229 ARG A 231 5 3 HELIX 11 AB2 LEU A 238 LEU A 242 5 5 SHEET 1 AA1 6 LEU A 26 LEU A 32 0 SHEET 2 AA1 6 MET A 1 LEU A 6 1 N MET A 1 O THR A 27 SHEET 3 AA1 6 VAL A 48 ASP A 51 1 O ILE A 50 N LEU A 6 SHEET 4 AA1 6 HIS A 71 VAL A 74 1 O VAL A 73 N VAL A 49 SHEET 5 AA1 6 SER A 98 ILE A 101 1 O LEU A 100 N VAL A 74 SHEET 6 AA1 6 GLY A 233 VAL A 236 1 O GLY A 233 N VAL A 99 SHEET 1 AA2 5 ALA A 175 VAL A 177 0 SHEET 2 AA2 5 ILE A 180 ARG A 186 -1 O VAL A 182 N ALA A 175 SHEET 3 AA2 5 SER A 125 HIS A 132 1 N GLU A 130 O VAL A 185 SHEET 4 AA2 5 ALA A 192 THR A 200 -1 O GLU A 195 N ILE A 129 SHEET 5 AA2 5 GLU A 203 SER A 211 -1 O SER A 211 N ALA A 192 CISPEP 1 ALA A 139 PRO A 140 0 -0.80 SITE 1 AC1 13 THR A 77 PRO A 103 ASN A 104 HIS A 133 SITE 2 AC1 13 LYS A 136 SER A 141 GLY A 142 THR A 143 SITE 3 AC1 13 ALA A 192 PHE A 217 NAP A 304 HOH A 424 SITE 4 AC1 13 HOH A 447 SITE 1 AC2 4 MET A 59 ARG A 83 IMD A 303 HOH A 494 SITE 1 AC3 5 MET A 59 GLY A 60 GLU A 63 TRP A 90 SITE 2 AC3 5 BEZ A 302 SITE 1 AC4 37 GLY A 7 LYS A 9 GLY A 10 LYS A 11 SITE 2 AC4 37 VAL A 12 LEU A 32 ASP A 33 ALA A 34 SITE 3 AC4 37 PHE A 52 THR A 53 GLY A 75 THR A 76 SITE 4 AC4 37 THR A 77 ALA A 102 PRO A 103 ASN A 104 SITE 5 AC4 37 PHE A 105 LYS A 136 PHE A 217 PDC A 301 SITE 6 AC4 37 EDO A 307 HOH A 402 HOH A 416 HOH A 421 SITE 7 AC4 37 HOH A 424 HOH A 440 HOH A 447 HOH A 449 SITE 8 AC4 37 HOH A 459 HOH A 480 HOH A 484 HOH A 491 SITE 9 AC4 37 HOH A 518 HOH A 522 HOH A 523 HOH A 563 SITE 10 AC4 37 HOH A 566 SITE 1 AC5 8 ILE A 129 LEU A 131 LEU A 190 GLU A 195 SITE 2 AC5 8 THR A 204 ARG A 208 ASP A 210 HOH A 429 SITE 1 AC6 4 ARG A 146 LEU A 238 GLU A 239 HOH A 479 SITE 1 AC7 9 THR A 53 HIS A 54 HIS A 135 LYS A 136 SITE 2 AC7 9 ALA A 137 NAP A 304 EDO A 308 HOH A 447 SITE 3 AC7 9 HOH A 459 SITE 1 AC8 7 HIS A 54 HIS A 135 EDO A 307 HOH A 416 SITE 2 AC8 7 HOH A 425 HOH A 454 HOH A 468 SITE 1 AC9 5 GLU A 63 PHE A 64 HOH A 487 HOH A 497 SITE 2 AC9 5 HOH A 602 SITE 1 AD1 4 GLY A 69 ASN A 96 THR A 97 HOH A 668 SITE 1 AD2 7 ASP A 138 ALA A 139 PRO A 140 THR A 167 SITE 2 AD2 7 HOH A 446 HOH A 499 HOH A 610 SITE 1 AD3 2 ASN A 161 HOH A 413 SITE 1 AD4 3 SO4 A 315 HOH A 401 HOH A 510 SITE 1 AD5 2 PHE A 122 ASP A 124 SITE 1 AD6 4 LEU A 223 EDO A 313 HOH A 590 HOH A 591 SITE 1 AD7 4 LYS A 94 PRO A 95 ASN A 96 THR A 97 SITE 1 AD8 2 ALA A 81 LYS A 149 SITE 1 AD9 7 ASP A 56 VAL A 57 HOH A 411 HOH A 454 SITE 2 AD9 7 HOH A 493 HOH A 522 HOH A 523 CRYST1 67.157 67.157 251.325 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014890 0.008597 0.000000 0.00000 SCALE2 0.000000 0.017194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003979 0.00000