HEADER OXIDOREDUCTASE 06-OCT-16 5TK2 TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED CUPREDOXIN-LIKE DOMAIN PROTEIN TITLE 2 FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 33-129; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS STR. AMES; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CUPREDOXIN, BETA SANDWICH, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,S.SHATSMAN,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 8 06-NOV-24 5TK2 1 REMARK REVDAT 7 15-NOV-23 5TK2 1 REMARK REVDAT 6 04-OCT-23 5TK2 1 LINK REVDAT 5 04-DEC-19 5TK2 1 REMARK REVDAT 4 27-SEP-17 5TK2 1 REMARK REVDAT 3 08-FEB-17 5TK2 1 AUTHOR JRNL REVDAT 2 14-DEC-16 5TK2 1 AUTHOR JRNL REVDAT 1 16-NOV-16 5TK2 0 JRNL AUTH Y.KIM,N.MALTSEVA,S.SHATSMAN,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED CUPREDOXIN-LIKE DOMAIN JRNL TITL 2 PROTEIN FROM BACILLUS ANTHRACIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 71571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61000 REMARK 3 B22 (A**2) : -3.46000 REMARK 3 B33 (A**2) : 1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.011 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.011 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2900 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2977 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3908 ; 1.389 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6919 ; 0.685 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 6.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;37.973 ;26.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;14.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3144 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 542 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2900 ; 4.484 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2866 ;12.007 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.507 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.493 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4HCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.9 % W/V PEG4000, 150 MM MALATE PH REMARK 280 5.0, 60 MM POTASSIUM THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.61300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.01150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.61300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.01150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 ASN A 32 REMARK 465 ASP A 33 REMARK 465 LEU A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 PRO A 37 REMARK 465 ILE A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 ALA B 31 REMARK 465 ASN B 32 REMARK 465 ASP B 33 REMARK 465 LEU B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 PRO B 37 REMARK 465 ILE B 38 REMARK 465 ALA B 39 REMARK 465 SER B 40 REMARK 465 SER C 29 REMARK 465 ASN C 30 REMARK 465 ALA C 31 REMARK 465 ASN C 32 REMARK 465 ASP C 33 REMARK 465 LEU C 34 REMARK 465 ALA C 35 REMARK 465 GLN C 36 REMARK 465 PRO C 37 REMARK 465 ILE C 38 REMARK 465 ALA C 39 REMARK 465 SER C 40 REMARK 465 SER D 29 REMARK 465 ASN D 30 REMARK 465 ALA D 31 REMARK 465 ASN D 32 REMARK 465 ASP D 33 REMARK 465 LEU D 34 REMARK 465 ALA D 35 REMARK 465 GLN D 36 REMARK 465 PRO D 37 REMARK 465 ILE D 38 REMARK 465 ALA D 39 REMARK 465 SER D 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 75 O HOH C 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 40.96 -86.41 REMARK 500 TYR A 115 40.96 -89.01 REMARK 500 LEU A 117 -86.50 -117.93 REMARK 500 ASP B 88 105.79 -161.97 REMARK 500 TYR B 115 39.53 -91.19 REMARK 500 LEU B 117 -80.72 -126.09 REMARK 500 TYR C 115 40.90 -93.80 REMARK 500 LEU C 117 -85.00 -122.74 REMARK 500 ASP D 88 105.31 -161.69 REMARK 500 TYR D 115 40.46 -87.93 REMARK 500 LEU D 117 -86.77 -120.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 ND1 REMARK 620 2 CYS A 113 SG 119.2 REMARK 620 3 HIS A 116 NE2 140.3 100.5 REMARK 620 4 HOH A 340 O 75.7 112.2 91.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 ND1 REMARK 620 2 CYS B 113 SG 117.5 REMARK 620 3 HIS B 116 NE2 143.3 99.1 REMARK 620 4 HOH B 311 O 78.1 106.4 93.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 78 ND1 REMARK 620 2 CYS C 113 SG 120.2 REMARK 620 3 HIS C 116 NE2 133.6 106.2 REMARK 620 4 HOH C 342 O 80.3 107.4 85.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD D 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 78 ND1 REMARK 620 2 CYS D 113 SG 121.8 REMARK 620 3 HIS D 116 NE2 133.6 104.5 REMARK 620 4 HOH D 326 O 81.3 106.5 82.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HCG RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE SAME PROTEIN IN THE PRESENCE OF ZN REMARK 900 RELATED ID: 4HCF RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE SAME PROTEIN IN THE PRESENCE OF CU REMARK 900 RELATED ID: 4HCI RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE SAME PROTEIN WITHOUT ANY METAL REMARK 900 RELATED ID: 5TK4 RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP05418 RELATED DB: TARGETTRACK DBREF 5TK2 A 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 DBREF 5TK2 B 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 DBREF 5TK2 C 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 DBREF 5TK2 D 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 SEQADV 5TK2 SER A 29 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ASN A 30 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ALA A 31 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 SER B 29 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ASN B 30 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ALA B 31 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 SER C 29 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ASN C 30 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ALA C 31 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 SER D 29 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ASN D 30 UNP Q81ST4 EXPRESSION TAG SEQADV 5TK2 ALA D 31 UNP Q81ST4 EXPRESSION TAG SEQRES 1 A 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 A 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 A 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 A 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 A 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 A 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 A 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 A 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS SEQRES 1 B 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 B 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 B 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 B 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 B 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 B 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 B 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 B 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS SEQRES 1 C 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 C 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 C 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 C 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 C 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 C 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 C 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 C 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS SEQRES 1 D 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 D 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 D 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 D 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 D 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 D 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 D 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 D 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS MODRES 5TK2 MSE A 121 MET MODIFIED RESIDUE MODRES 5TK2 MSE B 121 MET MODIFIED RESIDUE MODRES 5TK2 MSE C 121 MET MODIFIED RESIDUE MODRES 5TK2 MSE D 121 MET MODIFIED RESIDUE HET MSE A 121 8 HET MSE B 121 8 HET MSE C 121 8 HET MSE D 121 8 HET CD A 201 1 HET MLT A 202 9 HET CD B 201 1 HET EDO B 202 4 HET MLT B 203 9 HET CD C 201 1 HET CD D 201 1 HET FMT D 202 3 HET MLT D 203 9 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION HETNAM MLT D-MALATE HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 CD 4(CD 2+) FORMUL 6 MLT 3(C4 H6 O5) FORMUL 8 EDO C2 H6 O2 FORMUL 12 FMT C H2 O2 FORMUL 14 HOH *412(H2 O) HELIX 1 AA1 LYS A 83 GLY A 86 5 4 HELIX 2 AA2 LYS B 83 GLY B 86 5 4 HELIX 3 AA3 LYS C 83 GLY C 86 5 4 HELIX 4 AA4 LYS D 83 GLY D 86 5 4 SHEET 1 AA1 4 TYR A 52 ASN A 54 0 SHEET 2 AA1 4 VAL A 43 ASN A 49 -1 N GLU A 47 O ASN A 54 SHEET 3 AA1 4 THR A 66 ASN A 72 1 O LYS A 71 N LEU A 48 SHEET 4 AA1 4 GLU A 96 VAL A 101 -1 O LYS A 97 N LEU A 70 SHEET 1 AA2 3 VAL A 57 ILE A 60 0 SHEET 2 AA2 3 GLU A 122 VAL A 127 1 O ILE A 126 N ILE A 58 SHEET 3 AA2 3 GLY A 107 ILE A 112 -1 N GLY A 107 O VAL A 127 SHEET 1 AA3 2 HIS A 78 ILE A 82 0 SHEET 2 AA3 2 ILE A 87 VAL A 91 -1 O VAL A 89 N PHE A 80 SHEET 1 AA4 4 TYR B 52 ASN B 54 0 SHEET 2 AA4 4 VAL B 43 ASN B 49 -1 N GLU B 47 O ASN B 54 SHEET 3 AA4 4 THR B 66 ASN B 72 1 O LEU B 69 N ILE B 44 SHEET 4 AA4 4 GLU B 96 VAL B 101 -1 O LYS B 97 N LEU B 70 SHEET 1 AA5 3 VAL B 57 PRO B 61 0 SHEET 2 AA5 3 GLU B 122 LYS B 128 1 O ILE B 126 N ILE B 60 SHEET 3 AA5 3 GLY B 107 ILE B 112 -1 N GLY B 107 O VAL B 127 SHEET 1 AA6 2 HIS B 78 ILE B 82 0 SHEET 2 AA6 2 ILE B 87 VAL B 91 -1 O VAL B 91 N HIS B 78 SHEET 1 AA7 4 TYR C 52 ASN C 54 0 SHEET 2 AA7 4 LYS C 42 ASN C 49 -1 N GLU C 47 O ASN C 54 SHEET 3 AA7 4 THR C 66 ASN C 72 1 O LEU C 69 N ILE C 44 SHEET 4 AA7 4 GLU C 96 VAL C 101 -1 O LYS C 97 N LEU C 70 SHEET 1 AA8 3 VAL C 57 ILE C 60 0 SHEET 2 AA8 3 GLU C 122 VAL C 127 1 O ILE C 126 N ILE C 58 SHEET 3 AA8 3 GLY C 107 ILE C 112 -1 N TYR C 109 O VAL C 125 SHEET 1 AA9 2 HIS C 78 ILE C 82 0 SHEET 2 AA9 2 ILE C 87 VAL C 91 -1 O VAL C 89 N PHE C 80 SHEET 1 AB1 4 TYR D 52 ASN D 54 0 SHEET 2 AB1 4 VAL D 43 ASN D 49 -1 N GLU D 47 O ASN D 54 SHEET 3 AB1 4 THR D 66 ASN D 72 1 O LEU D 69 N VAL D 46 SHEET 4 AB1 4 GLU D 96 VAL D 101 -1 O ILE D 99 N LEU D 68 SHEET 1 AB2 3 VAL D 57 ILE D 60 0 SHEET 2 AB2 3 GLU D 122 VAL D 127 1 O ILE D 126 N ILE D 58 SHEET 3 AB2 3 GLY D 107 ILE D 112 -1 N TYR D 109 O VAL D 125 SHEET 1 AB3 2 HIS D 78 ILE D 82 0 SHEET 2 AB3 2 ILE D 87 VAL D 91 -1 O VAL D 91 N HIS D 78 LINK C GLY A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N GLU A 122 1555 1555 1.33 LINK C GLY B 120 N MSE B 121 1555 1555 1.32 LINK C MSE B 121 N GLU B 122 1555 1555 1.33 LINK C GLY C 120 N MSE C 121 1555 1555 1.33 LINK C MSE C 121 N GLU C 122 1555 1555 1.33 LINK C GLY D 120 N MSE D 121 1555 1555 1.32 LINK C MSE D 121 N GLU D 122 1555 1555 1.33 LINK ND1 HIS A 78 CD CD A 201 1555 1555 2.39 LINK SG CYS A 113 CD CD A 201 1555 1555 2.48 LINK NE2 HIS A 116 CD CD A 201 1555 1555 2.37 LINK CD CD A 201 O HOH A 340 1555 1555 2.35 LINK ND1 HIS B 78 CD CD B 201 1555 1555 2.38 LINK SG CYS B 113 CD CD B 201 1555 1555 2.51 LINK NE2 HIS B 116 CD CD B 201 1555 1555 2.35 LINK CD CD B 201 O HOH B 311 1555 1555 2.37 LINK ND1 HIS C 78 CD CD C 201 1555 1555 2.30 LINK SG CYS C 113 CD CD C 201 1555 1555 2.48 LINK NE2 HIS C 116 CD CD C 201 1555 1555 2.33 LINK CD CD C 201 O HOH C 342 1555 1555 2.29 LINK ND1 HIS D 78 CD CD D 201 1555 1555 2.34 LINK SG CYS D 113 CD CD D 201 1555 1555 2.47 LINK NE2 HIS D 116 CD CD D 201 1555 1555 2.35 LINK CD CD D 201 O HOH D 326 1555 1555 2.48 CISPEP 1 ASP A 50 ASP A 51 0 -3.71 CISPEP 2 ASN A 54 PRO A 55 0 1.43 CISPEP 3 ASP B 50 ASP B 51 0 -3.85 CISPEP 4 ASN B 54 PRO B 55 0 4.94 CISPEP 5 ASP C 50 ASP C 51 0 -10.78 CISPEP 6 ASN C 54 PRO C 55 0 2.62 CISPEP 7 ASP D 50 ASP D 51 0 -7.89 CISPEP 8 ASN D 54 PRO D 55 0 -1.34 SITE 1 AC1 5 HIS A 78 CYS A 113 HIS A 116 MSE A 121 SITE 2 AC1 5 HOH A 340 SITE 1 AC2 6 GLY A 94 LYS A 95 GLU A 96 HOH A 302 SITE 2 AC2 6 HOH A 321 HOH A 374 SITE 1 AC3 5 HIS B 78 CYS B 113 HIS B 116 MSE B 121 SITE 2 AC3 5 HOH B 311 SITE 1 AC4 5 LYS B 83 ARG B 114 HOH B 313 HOH B 327 SITE 2 AC4 5 LYS D 83 SITE 1 AC5 3 LYS A 42 THR B 100 HOH B 315 SITE 1 AC6 5 HIS C 78 CYS C 113 HIS C 116 MSE C 121 SITE 2 AC6 5 HOH C 342 SITE 1 AC7 5 HIS D 78 CYS D 113 HIS D 116 MSE D 121 SITE 2 AC7 5 HOH D 326 SITE 1 AC8 2 THR D 100 MLT D 203 SITE 1 AC9 9 LYS C 97 ILE D 99 THR D 100 FMT D 202 SITE 2 AC9 9 HOH D 311 HOH D 342 HOH D 362 HOH D 363 SITE 3 AC9 9 HOH D 379 CRYST1 65.226 58.023 108.796 90.00 90.00 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015331 0.000000 -0.000001 0.00000 SCALE2 0.000000 0.017235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009192 0.00000